Wall clock time and date at job start Tue Mar 31 2020 06:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.46736 * 2 1 4 4 O 1.42903 * 109.46734 * 240.00406 * 2 1 3 5 5 C 1.35927 * 116.99760 * 84.15208 * 4 2 1 6 6 C 1.38719 * 120.03760 * 174.13912 * 5 4 2 7 7 C 1.38146 * 119.95424 * 179.79078 * 6 5 4 8 8 C 1.38367 * 120.04068 * 0.46198 * 7 6 5 9 9 Cl 1.73601 * 119.95780 * 179.77028 * 8 7 6 10 10 C 1.38369 * 120.08706 * 359.79155 * 8 7 6 11 11 C 1.38146 * 120.04065 * 359.97438 * 10 8 7 12 12 C 1.50697 * 109.47386 * 120.00140 * 2 1 3 13 13 O 1.21280 * 119.99597 * 114.99918 * 12 2 1 14 14 N 1.34773 * 120.00213 * 295.00297 * 12 2 1 15 15 C 1.39240 * 120.00040 * 185.23842 * 14 12 2 16 16 C 1.39478 * 119.83690 * 212.51245 * 15 14 12 17 17 C 1.36374 * 120.17014 * 179.76048 * 16 15 14 18 18 C 1.40869 * 119.82775 * 0.51793 * 17 16 15 19 19 C 1.41152 * 120.16512 * 179.71970 * 18 17 16 20 20 H 1.07991 * 120.00153 * 205.48219 * 19 18 17 21 21 C 1.39911 * 119.99996 * 25.47994 * 19 18 17 22 22 N 1.30877 * 119.99735 * 15.65176 * 21 19 18 23 23 Si 1.86795 * 120.00120 * 195.65449 * 21 19 18 24 24 H 1.48504 * 109.47229 * 59.99905 * 23 21 19 25 25 H 1.48503 * 109.47131 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47176 * 299.99788 * 23 21 19 27 27 C 1.40863 * 119.67096 * 359.73544 * 18 17 16 28 28 C 1.36383 * 119.83312 * 0.02562 * 27 18 17 29 29 H 1.09006 * 109.46695 * 299.99115 * 1 2 3 30 30 H 1.09001 * 109.46736 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47786 * 59.99697 * 1 2 3 32 32 H 1.07997 * 120.02307 * 0.02562 * 6 5 4 33 33 H 1.07999 * 119.98239 * 180.22975 * 7 6 5 34 34 H 1.07994 * 119.97963 * 179.97438 * 10 8 7 35 35 H 1.07997 * 120.01871 * 179.97438 * 11 10 8 36 36 H 0.96996 * 119.99832 * 5.23777 * 14 12 2 37 37 H 1.08004 * 119.91273 * 0.02703 * 16 15 14 38 38 H 1.08001 * 120.08390 * 180.25824 * 17 16 15 39 39 H 0.97006 * 119.99562 * 179.97438 * 22 21 19 40 40 H 1.08003 * 120.08595 * 179.97438 * 27 18 17 41 41 H 1.07994 * 119.91895 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1669 5 6 2.0956 0.0585 -2.3087 6 6 2.6631 -0.4961 -3.4465 7 6 2.7490 0.2479 -4.6073 8 6 2.2782 1.5488 -4.6326 9 17 2.3927 2.4839 -6.0908 10 6 1.7166 2.1055 -3.4972 11 6 1.6245 1.3629 -2.3359 12 6 2.0324 -0.7104 1.2304 13 8 2.6531 -1.7467 1.1213 14 7 1.7920 -0.1943 2.4520 15 6 2.3478 -0.7899 3.5811 16 6 1.6552 -0.7640 4.7915 17 6 2.1910 -1.3495 5.9005 18 6 3.4523 -1.9721 5.8240 19 6 4.0162 -2.5751 6.9689 20 1 5.0879 -2.6797 7.0517 21 6 3.1868 -3.0374 7.9964 22 7 1.9056 -3.1967 7.7816 23 14 3.9079 -3.4270 9.6749 24 1 4.5331 -2.2047 10.2410 25 1 2.8284 -3.8951 10.5809 26 1 4.9353 -4.4903 9.5376 27 6 4.1481 -1.9896 4.5994 28 6 3.5973 -1.4042 3.4976 29 1 -0.3633 0.5137 0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 -0.8899 32 1 3.0340 -1.5102 -3.4260 33 1 3.1874 -0.1847 -5.4945 34 1 1.3501 3.1211 -3.5188 35 1 1.1865 1.7979 -1.4497 36 1 1.2318 0.5921 2.5445 37 1 0.6901 -0.2826 4.8495 38 1 1.6516 -1.3322 6.8360 39 1 1.3306 -3.5175 8.4939 40 1 5.1158 -2.4648 4.5332 41 1 4.1298 -1.4164 2.5581 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012380799.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:20 Heat of formation + Delta-G solvation = -30.526307 kcal Electronic energy + Delta-G solvation = -25894.368575 eV Core-core repulsion = 21958.259778 eV Total energy + Delta-G solvation = -3936.108797 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.092 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.86303 -39.59776 -38.05548 -37.14154 -36.42461 -34.55517 -33.27727 -32.25091 -31.25300 -29.80147 -29.59898 -28.86123 -25.58195 -24.46451 -23.35166 -22.54828 -21.54017 -20.79690 -19.66500 -18.72352 -17.62907 -17.34392 -16.80068 -16.18314 -15.95526 -15.80136 -15.24512 -14.88288 -14.52403 -14.37392 -13.97261 -13.93428 -13.56925 -13.40833 -13.06572 -12.81828 -12.70639 -12.46176 -12.30653 -12.11133 -11.93758 -11.84489 -11.50771 -11.39636 -11.14115 -11.10550 -11.04129 -10.94011 -10.78427 -10.05723 -9.65186 -9.49659 -9.44577 -9.17573 -8.97756 -8.42667 -7.60405 -7.04161 -6.78575 -4.35587 0.85029 0.89382 1.85079 2.41645 2.59096 2.93171 3.03270 3.05047 3.07117 3.25941 3.30028 3.71601 3.89443 4.32992 4.40083 4.51422 4.56502 4.70098 4.77153 4.80583 4.98137 5.11051 5.27252 5.34078 5.54148 5.63749 5.64810 5.80782 5.86997 5.91837 6.12820 6.20229 6.36348 6.67754 6.82496 6.98711 7.04584 7.11821 7.22600 7.53620 7.63898 7.81239 7.97678 8.17992 8.22571 8.52643 8.62948 8.83273 8.92963 10.13324 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.038662 B = 0.001722 C = 0.001694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.049960 B =16252.232862 C =16527.155648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.067 3.933 3 H 0.097 0.903 4 O -0.278 6.278 5 C 0.142 3.858 6 C -0.138 4.138 7 C -0.069 4.069 8 C -0.078 4.078 9 Cl -0.076 7.076 10 C -0.068 4.068 11 C -0.203 4.203 12 C 0.500 3.500 13 O -0.506 6.506 14 N -0.642 5.642 15 C -0.010 4.010 16 C -0.111 4.111 17 C -0.152 4.152 18 C 0.106 3.894 19 C -0.455 4.455 20 H 0.079 0.921 21 C 0.073 3.927 22 N -0.793 5.793 23 Si 0.911 3.089 24 H -0.263 1.263 25 H -0.278 1.278 26 H -0.265 1.265 27 C -0.215 4.215 28 C -0.076 4.076 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.143 0.857 33 H 0.140 0.860 34 H 0.135 0.865 35 H 0.140 0.860 36 H 0.395 0.605 37 H 0.091 0.909 38 H 0.124 0.876 39 H 0.282 0.718 40 H 0.096 0.904 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.432 11.240 -18.577 22.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.007 3.993 3 H 0.115 0.885 4 O -0.190 6.190 5 C 0.096 3.904 6 C -0.157 4.157 7 C -0.088 4.088 8 C -0.104 4.104 9 Cl -0.047 7.047 10 C -0.087 4.087 11 C -0.222 4.222 12 C 0.285 3.715 13 O -0.380 6.380 14 N -0.287 5.287 15 C -0.102 4.102 16 C -0.132 4.132 17 C -0.172 4.172 18 C 0.103 3.897 19 C -0.485 4.485 20 H 0.097 0.903 21 C -0.144 4.144 22 N -0.418 5.418 23 Si 0.736 3.264 24 H -0.188 1.188 25 H -0.203 1.203 26 H -0.190 1.190 27 C -0.235 4.235 28 C -0.096 4.096 29 H 0.100 0.900 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.161 0.839 33 H 0.158 0.842 34 H 0.153 0.847 35 H 0.158 0.842 36 H 0.229 0.771 37 H 0.109 0.891 38 H 0.141 0.859 39 H 0.093 0.907 40 H 0.114 0.886 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -4.134 10.270 -18.648 21.687 hybrid contribution -0.227 0.429 0.710 0.860 sum -4.360 10.699 -17.938 21.337 Atomic orbital electron populations 1.22359 0.92630 1.04774 1.03699 1.22294 0.95771 0.96918 0.84302 0.88539 1.86273 1.80354 1.37047 1.15312 1.19191 0.93946 0.90254 0.87016 1.20454 1.03009 1.01827 0.90393 1.20869 0.97820 0.91923 0.98146 1.20774 1.07169 0.93667 0.88812 1.98362 1.97182 1.73005 1.36181 1.20824 0.97084 1.00062 0.90710 1.21304 1.06781 0.94330 0.99745 1.19876 0.81982 0.85744 0.83918 1.90749 1.39319 1.22134 1.85833 1.42812 1.50648 1.30453 1.04773 1.17112 0.95682 1.11769 0.85654 1.20199 0.97649 1.02430 0.92877 1.20927 0.98288 1.00489 0.97529 1.17682 0.91634 0.88806 0.91591 1.19555 0.94747 1.33472 1.00700 0.90334 1.25944 0.94578 0.93323 1.00603 1.69828 1.05319 1.32751 1.33913 0.86318 0.79524 0.79756 0.80851 1.18801 1.20318 1.18954 1.20661 1.01777 1.08262 0.92772 1.20267 0.93203 0.98388 0.97764 0.90028 0.90360 0.90784 0.83907 0.84240 0.84669 0.84226 0.77136 0.89096 0.85876 0.90747 0.88605 0.87976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.62 9.09 37.16 0.34 -1.28 16 2 C 0.07 0.80 2.64 -27.88 -0.07 0.73 16 3 H 0.10 0.89 6.37 -51.93 -0.33 0.56 16 4 O -0.28 -3.83 9.34 -39.37 -0.37 -4.20 16 5 C 0.14 1.60 6.59 -39.23 -0.26 1.34 16 6 C -0.14 -1.40 9.99 -39.44 -0.39 -1.80 16 7 C -0.07 -0.60 9.82 -39.57 -0.39 -0.99 16 8 C -0.08 -0.69 6.32 -39.49 -0.25 -0.94 16 9 Cl -0.08 -0.63 28.95 -51.86 -1.50 -2.13 16 10 C -0.07 -0.57 9.82 -39.57 -0.39 -0.96 16 11 C -0.20 -1.82 8.20 -39.44 -0.32 -2.14 16 12 C 0.50 8.52 6.91 -10.99 -0.08 8.44 16 13 O -0.51 -11.17 14.12 -14.30 -0.20 -11.38 16 14 N -0.64 -10.65 5.28 -9.74 -0.05 -10.70 16 15 C -0.01 -0.22 6.30 -83.57 -0.53 -0.75 16 16 C -0.11 -2.46 9.89 -39.79 -0.39 -2.85 16 17 C -0.15 -3.82 8.63 -39.26 -0.34 -4.16 16 18 C 0.11 2.79 5.57 -106.80 -0.60 2.19 16 19 C -0.46 -11.91 9.04 -37.85 -0.34 -12.25 16 20 H 0.08 1.97 7.89 -52.49 -0.41 1.56 16 21 C 0.07 1.81 5.18 -17.33 -0.09 1.72 16 22 N -0.79 -20.09 10.88 55.55 0.60 -19.48 16 23 Si 0.91 18.31 29.59 -169.99 -5.03 13.28 16 24 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 25 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 26 H -0.26 -5.30 7.11 56.52 0.40 -4.89 16 27 C -0.21 -5.40 9.74 -39.26 -0.38 -5.78 16 28 C -0.08 -1.81 8.58 -39.79 -0.34 -2.15 16 29 H 0.08 0.59 7.76 -51.93 -0.40 0.19 16 30 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.07 0.54 6.81 -51.93 -0.35 0.19 16 32 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 33 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 34 H 0.14 0.86 8.06 -52.49 -0.42 0.43 16 35 H 0.14 0.97 5.39 -52.49 -0.28 0.69 16 36 H 0.39 4.83 8.41 -40.82 -0.34 4.48 16 37 H 0.09 1.72 8.06 -52.48 -0.42 1.30 16 38 H 0.12 3.16 6.14 -52.49 -0.32 2.83 16 39 H 0.28 6.49 8.30 -40.82 -0.34 6.15 16 40 H 0.10 2.30 8.06 -52.48 -0.42 1.87 16 41 H 0.10 2.41 6.35 -52.49 -0.33 2.07 16 LS Contribution 363.65 15.07 5.48 5.48 Total: -1.00 -30.98 363.65 -10.35 -41.33 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -4.45 Total: 9.45 kcal Atomic # 6 Polarization: -16.81 SS G_CDS: -4.82 Total: -21.64 kcal Atomic # 7 Polarization: -30.74 SS G_CDS: 0.55 Total: -30.18 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: -0.57 Total: -15.58 kcal Atomic # 14 Polarization: 18.31 SS G_CDS: -5.03 Total: 13.28 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -1.50 Total: -2.13 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.98 -10.35 -41.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012380799.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.799 kcal (2) G-P(sol) polarization free energy of solvation -30.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds