Wall clock time and date at job start Tue Mar 31 2020 06:21:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.47504 * 2 1 4 4 O 1.42902 * 109.46946 * 119.99529 * 2 1 3 5 5 C 1.35921 * 117.00020 * 275.85127 * 4 2 1 6 6 C 1.38718 * 120.04315 * 5.57590 * 5 4 2 7 7 C 1.38147 * 119.95672 * 179.97438 * 6 5 4 8 8 C 1.38365 * 120.04400 * 0.02562 * 7 6 5 9 9 Cl 1.73598 * 119.95534 * 179.97438 * 8 7 6 10 10 C 1.38361 * 120.08421 * 0.25341 * 8 7 6 11 11 C 1.38152 * 120.04369 * 359.48866 * 10 8 7 12 12 C 1.50693 * 109.47243 * 239.99044 * 2 1 3 13 13 O 1.21283 * 120.00531 * 245.00167 * 12 2 1 14 14 N 1.34786 * 119.99643 * 65.00431 * 12 2 1 15 15 C 1.39239 * 119.99702 * 185.23763 * 14 12 2 16 16 C 1.39481 * 119.83245 * 212.51310 * 15 14 12 17 17 C 1.36373 * 120.16827 * 179.72132 * 16 15 14 18 18 C 1.40870 * 119.82652 * 0.58150 * 17 16 15 19 19 C 1.41152 * 120.16446 * 179.67699 * 18 17 16 20 20 H 1.08006 * 120.00356 * 205.47397 * 19 18 17 21 21 C 1.39907 * 120.00112 * 25.47621 * 19 18 17 22 22 N 1.30875 * 120.00035 * 15.64595 * 21 19 18 23 23 Si 1.86800 * 119.99931 * 195.65349 * 21 19 18 24 24 H 1.48505 * 109.47294 * 89.99716 * 23 21 19 25 25 H 1.48501 * 109.47085 * 209.99445 * 23 21 19 26 26 H 1.48498 * 109.47081 * 329.99358 * 23 21 19 27 27 C 1.40875 * 119.67364 * 359.69375 * 18 17 16 28 28 C 1.36369 * 119.82380 * 0.02562 * 27 18 17 29 29 H 1.08996 * 109.46940 * 300.00876 * 1 2 3 30 30 H 1.09002 * 109.46407 * 60.00586 * 1 2 3 31 31 H 1.09001 * 109.46787 * 180.02562 * 1 2 3 32 32 H 1.08005 * 120.02001 * 0.02562 * 6 5 4 33 33 H 1.08002 * 119.97444 * 179.97438 * 7 6 5 34 34 H 1.08003 * 119.97971 * 179.72591 * 10 8 7 35 35 H 1.08001 * 120.02379 * 180.25936 * 11 10 8 36 36 H 0.96991 * 119.99864 * 5.24471 * 14 12 2 37 37 H 1.07997 * 119.91556 * 0.02562 * 16 15 14 38 38 H 1.07993 * 120.08772 * 180.25433 * 17 16 15 39 39 H 0.97000 * 119.99810 * 180.02562 * 22 21 19 40 40 H 1.07994 * 120.08417 * 179.97438 * 27 18 17 41 41 H 1.08007 * 119.90981 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.0956 0.0584 2.3087 6 6 1.6247 1.3629 2.3359 7 6 1.7159 2.1051 3.4975 8 6 2.2769 1.5482 4.6332 9 17 2.3909 2.4832 6.0914 10 6 2.7524 0.2492 4.6063 11 6 2.6582 -0.4980 3.4481 12 6 2.0324 -0.7106 -1.2303 13 8 2.6530 -1.7469 -1.1212 14 7 1.7920 -0.1944 -2.4520 15 6 2.1596 -0.9040 -3.5922 16 6 2.5595 -0.2169 -4.7382 17 6 2.9264 -0.9051 -5.8569 18 6 2.8891 -2.3133 -5.8569 19 6 3.2608 -3.0327 -7.0131 20 1 2.8669 -4.0240 -7.1824 21 6 4.1396 -2.4616 -7.9399 22 7 4.8517 -1.4150 -7.6077 23 14 4.2963 -3.1928 -9.6517 24 1 3.3138 -2.5459 -10.5582 25 1 5.6704 -2.9612 -10.1650 26 1 4.0293 -4.6523 -9.5929 27 6 2.4785 -3.0001 -4.6975 28 6 2.1200 -2.2982 -3.5846 29 1 -0.3633 0.5140 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.1864 1.7978 1.4498 33 1 1.3497 3.1209 3.5190 34 1 3.1940 -0.1823 5.4924 35 1 3.0256 -1.5134 3.4287 36 1 1.3630 0.6713 -2.5368 37 1 2.5834 0.8628 -4.7380 38 1 3.2398 -0.3719 -6.7422 39 1 5.4607 -1.0188 -8.2504 40 1 2.4470 -4.0796 -4.6903 41 1 1.8047 -2.8234 -2.6950 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012380800.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:25 Heat of formation + Delta-G solvation = -30.607614 kcal Electronic energy + Delta-G solvation = -25892.149349 eV Core-core repulsion = 21956.037026 eV Total energy + Delta-G solvation = -3936.112323 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.092 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.86144 -39.59711 -38.05424 -37.14124 -36.42232 -34.55440 -33.26930 -32.25125 -31.24863 -29.80251 -29.59074 -28.87863 -25.59468 -24.44349 -23.35140 -22.53911 -21.57742 -20.77549 -19.64646 -18.72449 -17.61857 -17.35013 -16.81193 -16.15469 -15.95996 -15.82668 -15.24838 -14.88426 -14.69565 -14.16414 -14.00061 -13.92578 -13.56293 -13.40017 -13.06728 -12.75124 -12.72996 -12.45745 -12.33062 -12.17811 -11.88170 -11.85985 -11.50537 -11.40551 -11.17163 -11.08062 -11.05264 -10.92503 -10.78208 -10.03790 -9.65133 -9.49416 -9.44484 -9.18226 -8.97950 -8.42425 -7.60518 -7.04275 -6.78574 -4.35709 0.85362 0.89665 1.85360 2.41022 2.58839 2.91839 3.03508 3.05645 3.08322 3.26640 3.30069 3.71457 3.89480 4.33092 4.40281 4.51507 4.56660 4.69511 4.77280 4.81042 4.98520 5.11775 5.28252 5.33827 5.54377 5.64083 5.64676 5.80576 5.87236 5.92007 6.12867 6.20479 6.36266 6.67673 6.82368 6.98737 7.04795 7.11828 7.22517 7.53635 7.63846 7.81161 7.97860 8.17962 8.22488 8.52743 8.62962 8.83305 8.92889 10.13296 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.033956 B = 0.001720 C = 0.001716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.407121 B =16272.080099 C =16310.285164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.067 3.933 3 H 0.096 0.904 4 O -0.278 6.278 5 C 0.143 3.857 6 C -0.203 4.203 7 C -0.068 4.068 8 C -0.078 4.078 9 Cl -0.076 7.076 10 C -0.069 4.069 11 C -0.138 4.138 12 C 0.500 3.500 13 O -0.506 6.506 14 N -0.642 5.642 15 C -0.010 4.010 16 C -0.112 4.112 17 C -0.152 4.152 18 C 0.105 3.895 19 C -0.455 4.455 20 H 0.079 0.921 21 C 0.073 3.927 22 N -0.793 5.793 23 Si 0.911 3.089 24 H -0.267 1.267 25 H -0.278 1.278 26 H -0.262 1.262 27 C -0.214 4.214 28 C -0.076 4.076 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.140 0.860 33 H 0.135 0.865 34 H 0.140 0.860 35 H 0.143 0.857 36 H 0.395 0.605 37 H 0.091 0.909 38 H 0.124 0.876 39 H 0.281 0.719 40 H 0.096 0.904 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.308 9.512 18.423 21.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.007 3.993 3 H 0.114 0.886 4 O -0.190 6.190 5 C 0.096 3.904 6 C -0.222 4.222 7 C -0.087 4.087 8 C -0.104 4.104 9 Cl -0.047 7.047 10 C -0.088 4.088 11 C -0.157 4.157 12 C 0.285 3.715 13 O -0.380 6.380 14 N -0.287 5.287 15 C -0.102 4.102 16 C -0.132 4.132 17 C -0.172 4.172 18 C 0.103 3.897 19 C -0.484 4.484 20 H 0.097 0.903 21 C -0.145 4.145 22 N -0.418 5.418 23 Si 0.736 3.264 24 H -0.193 1.193 25 H -0.203 1.203 26 H -0.186 1.186 27 C -0.235 4.235 28 C -0.096 4.096 29 H 0.092 0.908 30 H 0.101 0.899 31 H 0.096 0.904 32 H 0.158 0.842 33 H 0.153 0.847 34 H 0.158 0.842 35 H 0.161 0.839 36 H 0.229 0.771 37 H 0.109 0.891 38 H 0.141 0.859 39 H 0.092 0.908 40 H 0.114 0.886 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -6.619 8.772 18.519 21.534 hybrid contribution -0.027 0.564 -0.704 0.903 sum -6.646 9.337 17.814 21.183 Atomic orbital electron populations 1.22351 0.92551 1.04736 1.03728 1.22283 0.95735 0.96963 0.84303 0.88630 1.86269 1.80355 1.37054 1.15310 1.19189 0.93964 0.90248 0.86992 1.21304 1.06772 0.94357 0.99740 1.20824 0.97119 1.00047 0.90689 1.20770 1.07125 0.93712 0.88820 1.98362 1.97188 1.73019 1.36160 1.20869 0.97774 0.91928 0.98182 1.20455 1.03057 1.01764 0.90409 1.19883 0.81172 0.86664 0.83807 1.90750 1.38312 1.23177 1.85809 1.42806 1.59638 1.22049 1.04169 1.17110 1.15501 0.91043 0.86528 1.20202 1.01942 0.97252 0.93796 1.20927 1.04242 0.94436 0.97623 1.17693 0.88489 0.92041 0.91526 1.19597 1.23174 1.02407 1.03270 0.90280 1.25946 0.93798 0.94361 1.00373 1.69834 1.17570 1.18953 1.35453 0.86261 0.78163 0.80524 0.81488 1.19257 1.20290 1.18570 1.20661 1.11452 0.97898 0.93446 1.20263 0.99746 0.92033 0.97551 0.90812 0.89948 0.90417 0.84227 0.84668 0.84239 0.83906 0.77140 0.89105 0.85879 0.90801 0.88599 0.87945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.60 9.10 37.16 0.34 -1.26 16 2 C 0.07 0.80 2.64 -27.88 -0.07 0.73 16 3 H 0.10 0.88 6.37 -51.93 -0.33 0.55 16 4 O -0.28 -3.84 9.34 -39.35 -0.37 -4.21 16 5 C 0.14 1.61 6.59 -39.22 -0.26 1.35 16 6 C -0.20 -1.83 8.21 -39.44 -0.32 -2.15 16 7 C -0.07 -0.57 9.82 -39.57 -0.39 -0.96 16 8 C -0.08 -0.69 6.32 -39.49 -0.25 -0.94 16 9 Cl -0.08 -0.64 28.95 -51.86 -1.50 -2.14 16 10 C -0.07 -0.61 9.82 -39.57 -0.39 -1.00 16 11 C -0.14 -1.41 9.99 -39.43 -0.39 -1.81 16 12 C 0.50 8.51 6.91 -10.98 -0.08 8.43 16 13 O -0.51 -11.17 14.12 -14.31 -0.20 -11.37 16 14 N -0.64 -10.62 5.27 -9.74 -0.05 -10.67 16 15 C -0.01 -0.21 6.30 -83.57 -0.53 -0.74 16 16 C -0.11 -2.47 9.89 -39.79 -0.39 -2.86 16 17 C -0.15 -3.82 8.63 -39.26 -0.34 -4.16 16 18 C 0.11 2.78 5.57 -106.80 -0.60 2.18 16 19 C -0.46 -11.90 9.04 -37.85 -0.34 -12.24 16 20 H 0.08 1.99 7.89 -52.48 -0.41 1.57 16 21 C 0.07 1.80 5.18 -17.33 -0.09 1.71 16 22 N -0.79 -20.13 10.88 55.55 0.60 -19.52 16 23 Si 0.91 18.33 29.59 -169.99 -5.03 13.30 16 24 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 25 H -0.28 -5.49 7.11 56.52 0.40 -5.08 16 26 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 27 C -0.21 -5.38 9.74 -39.26 -0.38 -5.76 16 28 C -0.08 -1.80 8.58 -39.79 -0.34 -2.14 16 29 H 0.07 0.54 6.81 -51.93 -0.35 0.18 16 30 H 0.08 0.60 8.11 -51.93 -0.42 0.18 16 31 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.14 0.98 5.39 -52.48 -0.28 0.69 16 33 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 34 H 0.14 0.95 8.06 -52.48 -0.42 0.53 16 35 H 0.14 1.36 8.06 -52.49 -0.42 0.94 16 36 H 0.40 4.81 8.77 -40.82 -0.36 4.46 16 37 H 0.09 1.73 8.06 -52.49 -0.42 1.30 16 38 H 0.12 3.16 6.14 -52.49 -0.32 2.84 16 39 H 0.28 6.47 8.30 -40.82 -0.34 6.14 16 40 H 0.10 2.29 8.06 -52.49 -0.42 1.87 16 41 H 0.10 2.40 6.35 -52.48 -0.33 2.06 16 LS Contribution 364.37 15.07 5.49 5.49 Total: -1.00 -31.02 364.37 -10.37 -41.39 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -4.49 Total: 9.37 kcal Atomic # 6 Polarization: -16.81 SS G_CDS: -4.82 Total: -21.63 kcal Atomic # 7 Polarization: -30.75 SS G_CDS: 0.55 Total: -30.19 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: -0.57 Total: -15.58 kcal Atomic # 14 Polarization: 18.33 SS G_CDS: -5.03 Total: 13.30 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -1.50 Total: -2.14 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.02 -10.37 -41.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012380800.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.778 kcal (2) G-P(sol) polarization free energy of solvation -31.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds