Wall clock time and date at job start Tue Mar 31 2020 06:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47434 * 2 1 4 4 O 1.42905 * 109.47246 * 240.00006 * 2 1 3 5 5 C 1.35926 * 116.99818 * 82.92649 * 4 2 1 6 6 C 1.38706 * 120.05818 * 354.52105 * 5 4 2 7 7 C 1.38153 * 119.95343 * 179.74753 * 6 5 4 8 8 C 1.38279 * 120.07886 * 0.52473 * 7 6 5 9 9 C 1.38252 * 120.11694 * 359.73032 * 8 7 6 10 10 C 1.38258 * 120.04350 * 0.02562 * 9 8 7 11 11 Cl 1.73600 * 120.03995 * 180.02562 * 10 9 8 12 12 C 1.50696 * 109.47159 * 120.00039 * 2 1 3 13 13 O 1.21287 * 120.00348 * 115.00115 * 12 2 1 14 14 N 1.34774 * 120.00299 * 294.99769 * 12 2 1 15 15 C 1.39242 * 120.00641 * 186.15544 * 14 12 2 16 16 C 1.39476 * 119.83630 * 215.95344 * 15 14 12 17 17 C 1.36374 * 120.17153 * 179.75438 * 16 15 14 18 18 C 1.40873 * 119.82375 * 0.51913 * 17 16 15 19 19 C 1.41147 * 120.16229 * 179.71499 * 18 17 16 20 20 H 1.08008 * 120.00013 * 160.76620 * 19 18 17 21 21 C 1.39905 * 120.00306 * 340.76776 * 19 18 17 22 22 N 1.30874 * 119.99524 * 328.72172 * 21 19 18 23 23 Si 1.86794 * 120.00402 * 148.72553 * 21 19 18 24 24 H 1.48502 * 109.47130 * 94.98647 * 23 21 19 25 25 H 1.48501 * 109.47318 * 214.98782 * 23 21 19 26 26 H 1.48496 * 109.47100 * 334.98870 * 23 21 19 27 27 C 1.40871 * 119.67213 * 359.73598 * 18 17 16 28 28 C 1.36372 * 119.82963 * 0.02562 * 27 18 17 29 29 H 1.08991 * 109.46994 * 60.00386 * 1 2 3 30 30 H 1.09002 * 109.46768 * 299.99862 * 1 2 3 31 31 H 1.09000 * 109.46541 * 180.02562 * 1 2 3 32 32 H 1.08001 * 120.02320 * 359.97438 * 6 5 4 33 33 H 1.08002 * 119.96248 * 180.25410 * 7 6 5 34 34 H 1.07999 * 119.94598 * 179.75058 * 8 7 6 35 35 H 1.07999 * 119.97912 * 179.97438 * 9 8 7 36 36 H 0.96999 * 119.99859 * 6.15329 * 14 12 2 37 37 H 1.08000 * 119.90986 * 0.02562 * 16 15 14 38 38 H 1.07994 * 120.08871 * 180.25073 * 17 16 15 39 39 H 0.97004 * 119.99713 * 179.97438 * 22 21 19 40 40 H 1.08001 * 120.08195 * 179.97438 * 27 18 17 41 41 H 1.08007 * 119.91623 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6737 -1.1668 5 6 2.0715 0.0515 -2.3146 6 6 1.5796 1.3480 -2.3462 7 6 1.6515 2.0849 -3.5125 8 6 2.2035 1.5277 -4.6514 9 6 2.6900 0.2339 -4.6249 10 6 2.6250 -0.5063 -3.4589 11 17 3.2365 -2.1307 -3.4256 12 6 2.0323 -0.7104 1.2304 13 8 2.6530 -1.7467 1.1215 14 7 1.7920 -0.1942 2.4520 15 6 2.3632 -0.7784 3.5795 16 6 1.6478 -0.8225 4.7760 17 6 2.1987 -1.3975 5.8831 18 6 3.4980 -1.9379 5.8190 19 6 4.0774 -2.5293 6.9621 20 1 4.9131 -3.2053 6.8557 21 6 3.5693 -2.2399 8.2331 22 7 3.0419 -1.0669 8.4754 23 14 3.6438 -3.5276 9.5843 24 1 4.8594 -3.3099 10.4091 25 1 2.4369 -3.4154 10.4421 26 1 3.6945 -4.8812 8.9757 27 6 4.2164 -1.8848 4.6083 28 6 3.6504 -1.3110 3.5083 29 1 -0.3633 0.5137 -0.8899 30 1 -0.3633 0.5138 0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 1.1439 1.7824 -1.4585 33 1 1.2723 3.0959 -3.5361 34 1 2.2551 2.1044 -5.5631 35 1 3.1203 -0.1992 -5.5158 36 1 1.2211 0.5843 2.5457 37 1 0.6533 -0.4042 4.8246 38 1 1.6420 -1.4345 6.8078 39 1 2.6893 -0.8664 9.3566 40 1 5.2132 -2.2967 4.5518 41 1 4.2000 -1.2691 2.5795 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012380803.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:30 Heat of formation + Delta-G solvation = -28.896590 kcal Electronic energy + Delta-G solvation = -26213.533987 eV Core-core repulsion = 22277.495859 eV Total energy + Delta-G solvation = -3936.038127 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.092 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.81897 -39.52356 -37.89658 -37.00294 -36.44862 -34.52935 -33.29604 -32.15563 -31.02892 -29.94717 -29.58149 -28.91124 -25.55566 -24.46476 -23.17461 -22.58896 -21.51636 -20.75555 -19.63095 -18.71785 -17.57762 -17.35145 -16.60502 -16.15242 -15.94876 -15.78526 -15.24063 -14.87023 -14.56176 -14.35983 -14.14558 -13.98029 -13.48228 -13.21496 -12.99908 -12.77868 -12.57879 -12.26973 -12.14544 -12.08409 -11.95300 -11.66384 -11.50944 -11.39599 -11.22938 -11.14727 -10.98208 -10.88496 -10.57259 -10.16409 -9.76902 -9.48930 -9.22576 -9.13348 -8.73751 -8.44149 -7.58941 -7.18423 -6.93552 -4.30680 0.82063 1.00355 2.05861 2.45541 2.62270 2.90180 3.02754 3.06417 3.09650 3.29169 3.32634 3.75328 3.86103 4.38879 4.45259 4.46567 4.57478 4.73050 4.78658 4.86933 4.92402 5.10658 5.31486 5.35439 5.39742 5.65460 5.75661 5.83416 5.86171 6.06572 6.14954 6.29418 6.35987 6.71735 6.86802 6.95838 7.03124 7.10416 7.24569 7.52319 7.63943 7.84988 7.98182 8.20492 8.21984 8.50980 8.67534 8.80545 8.95043 9.97696 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.025251 B = 0.002086 C = 0.001984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.606075 B =13420.340230 C =14110.610227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.067 3.933 3 H 0.096 0.904 4 O -0.270 6.270 5 C 0.144 3.856 6 C -0.204 4.204 7 C -0.075 4.075 8 C -0.151 4.151 9 C -0.073 4.073 10 C -0.070 4.070 11 Cl -0.051 7.051 12 C 0.501 3.499 13 O -0.505 6.505 14 N -0.643 5.643 15 C -0.022 4.022 16 C -0.100 4.100 17 C -0.172 4.172 18 C 0.111 3.889 19 C -0.459 4.459 20 H 0.082 0.918 21 C 0.086 3.914 22 N -0.769 5.769 23 Si 0.899 3.101 24 H -0.269 1.269 25 H -0.274 1.274 26 H -0.257 1.257 27 C -0.223 4.223 28 C -0.065 4.065 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.139 0.861 33 H 0.131 0.869 34 H 0.132 0.868 35 H 0.138 0.862 36 H 0.394 0.606 37 H 0.090 0.910 38 H 0.112 0.888 39 H 0.284 0.716 40 H 0.095 0.905 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.388 8.673 -19.663 22.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.007 3.993 3 H 0.114 0.886 4 O -0.181 6.181 5 C 0.097 3.903 6 C -0.223 4.223 7 C -0.093 4.093 8 C -0.170 4.170 9 C -0.092 4.092 10 C -0.098 4.098 11 Cl -0.022 7.022 12 C 0.285 3.715 13 O -0.378 6.378 14 N -0.288 5.288 15 C -0.114 4.114 16 C -0.120 4.120 17 C -0.191 4.191 18 C 0.108 3.892 19 C -0.487 4.487 20 H 0.100 0.900 21 C -0.136 4.136 22 N -0.392 5.392 23 Si 0.722 3.278 24 H -0.194 1.194 25 H -0.198 1.198 26 H -0.181 1.181 27 C -0.243 4.243 28 C -0.085 4.085 29 H 0.092 0.908 30 H 0.100 0.900 31 H 0.096 0.904 32 H 0.157 0.843 33 H 0.149 0.851 34 H 0.150 0.850 35 H 0.156 0.844 36 H 0.227 0.773 37 H 0.108 0.892 38 H 0.130 0.870 39 H 0.094 0.906 40 H 0.113 0.887 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -5.908 7.728 -19.530 21.818 hybrid contribution -0.367 0.069 0.794 0.878 sum -6.275 7.796 -18.736 21.241 Atomic orbital electron populations 1.22365 0.92717 1.04736 1.03655 1.22301 0.95724 0.96931 0.84372 0.88603 1.86337 1.80097 1.37075 1.14626 1.18804 0.94643 0.90562 0.86292 1.21338 1.06503 0.93808 1.00637 1.21047 0.96712 0.99586 0.91986 1.21019 1.01740 0.95085 0.99106 1.20944 0.98294 0.93979 0.95987 1.20267 1.06279 0.89383 0.93837 1.98396 1.85955 1.19132 1.98699 1.19839 0.82003 0.85749 0.83861 1.90762 1.39294 1.21999 1.85794 1.42777 1.49891 1.31309 1.04797 1.16974 0.94894 1.13655 0.85862 1.20143 0.97271 1.01721 0.92905 1.20695 0.96203 1.05127 0.97099 1.17612 0.90974 0.88560 0.92037 1.19555 1.14967 1.23979 0.90190 0.89972 1.25977 0.92524 0.94859 1.00248 1.69939 1.26728 1.19003 1.23515 0.86459 0.78742 0.82641 0.79968 1.19416 1.19845 1.18057 1.20560 0.99678 1.09892 0.94202 1.20185 0.92744 0.98232 0.97310 0.90809 0.90047 0.90383 0.84304 0.85128 0.85029 0.84375 0.77280 0.89218 0.86975 0.90557 0.88677 0.88463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.69 9.06 37.16 0.34 -1.36 16 2 C 0.07 0.85 2.65 -27.88 -0.07 0.77 16 3 H 0.10 0.95 6.45 -51.93 -0.33 0.62 16 4 O -0.27 -4.01 8.81 -39.37 -0.35 -4.35 16 5 C 0.14 1.78 6.57 -39.19 -0.26 1.52 16 6 C -0.20 -1.88 8.16 -39.44 -0.32 -2.20 16 7 C -0.08 -0.56 10.04 -39.60 -0.40 -0.96 16 8 C -0.15 -1.11 10.04 -39.56 -0.40 -1.51 16 9 C -0.07 -0.66 9.83 -39.57 -0.39 -1.05 16 10 C -0.07 -0.84 6.33 -39.36 -0.25 -1.09 16 11 Cl -0.05 -0.68 28.50 -51.86 -1.48 -2.15 16 12 C 0.50 8.82 6.87 -10.99 -0.08 8.75 16 13 O -0.50 -11.44 14.41 -14.31 -0.21 -11.65 16 14 N -0.64 -11.02 5.26 -9.74 -0.05 -11.07 16 15 C -0.02 -0.49 6.23 -83.57 -0.52 -1.01 16 16 C -0.10 -2.26 9.90 -39.79 -0.39 -2.65 16 17 C -0.17 -4.34 8.74 -39.26 -0.34 -4.68 16 18 C 0.11 2.96 5.60 -106.80 -0.60 2.36 16 19 C -0.46 -12.06 8.96 -37.85 -0.34 -12.40 16 20 H 0.08 2.09 8.01 -52.48 -0.42 1.67 16 21 C 0.09 2.09 4.84 -17.34 -0.08 2.01 16 22 N -0.77 -19.09 11.50 55.55 0.64 -18.45 16 23 Si 0.90 18.06 29.66 -169.99 -5.04 13.02 16 24 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 25 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 26 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 27 C -0.22 -5.71 9.74 -39.26 -0.38 -6.09 16 28 C -0.06 -1.57 8.57 -39.79 -0.34 -1.91 16 29 H 0.07 0.57 6.67 -51.93 -0.35 0.22 16 30 H 0.08 0.61 7.74 -51.93 -0.40 0.21 16 31 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.14 1.01 5.34 -52.49 -0.28 0.73 16 33 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 34 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 35 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 36 H 0.39 5.07 8.40 -40.82 -0.34 4.73 16 37 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 38 H 0.11 2.87 6.29 -52.49 -0.33 2.54 16 39 H 0.28 6.31 8.30 -40.82 -0.34 5.97 16 40 H 0.10 2.32 8.06 -52.49 -0.42 1.90 16 41 H 0.10 2.34 6.64 -52.48 -0.35 1.99 16 LS Contribution 363.85 15.07 5.48 5.48 Total: -1.00 -31.75 363.85 -10.30 -42.05 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -4.48 Total: 8.61 kcal Atomic # 6 Polarization: -16.68 SS G_CDS: -4.83 Total: -21.51 kcal Atomic # 7 Polarization: -30.10 SS G_CDS: 0.59 Total: -29.51 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: -0.55 Total: -16.00 kcal Atomic # 14 Polarization: 18.06 SS G_CDS: -5.04 Total: 13.02 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -1.48 Total: -2.15 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.75 -10.30 -42.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012380803.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.156 kcal (2) G-P(sol) polarization free energy of solvation -31.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds