Wall clock time and date at job start Tue Mar 31 2020 06:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.47728 * 2 1 4 4 O 1.42901 * 109.47482 * 120.00234 * 2 1 3 5 5 C 1.35923 * 116.99870 * 275.02987 * 4 2 1 6 6 C 1.38708 * 120.06027 * 5.26917 * 5 4 2 7 7 C 1.38152 * 119.95384 * 179.74739 * 6 5 4 8 8 C 1.38275 * 120.07769 * 0.53028 * 7 6 5 9 9 C 1.38240 * 120.12295 * 359.72608 * 8 7 6 10 10 C 1.38266 * 120.03956 * 0.02562 * 9 8 7 11 11 Cl 1.73602 * 120.03726 * 179.97438 * 10 9 8 12 12 C 1.50698 * 109.46882 * 240.00225 * 2 1 3 13 13 O 1.21281 * 119.99978 * 245.00093 * 12 2 1 14 14 N 1.34780 * 120.00543 * 65.00104 * 12 2 1 15 15 C 1.39232 * 120.00767 * 174.40926 * 14 12 2 16 16 C 1.39489 * 119.82853 * 325.29948 * 15 14 12 17 17 C 1.36379 * 120.16553 * 180.23237 * 16 15 14 18 18 C 1.40874 * 119.82669 * 359.49670 * 17 16 15 19 19 C 1.41145 * 120.16243 * 180.25269 * 18 17 16 20 20 H 1.08002 * 120.00254 * 34.62065 * 19 18 17 21 21 C 1.39906 * 120.00393 * 214.62694 * 19 18 17 22 22 N 1.30875 * 119.99541 * 5.45747 * 21 19 18 23 23 Si 1.86799 * 120.00379 * 185.45830 * 21 19 18 24 24 H 1.48498 * 109.47120 * 90.00122 * 23 21 19 25 25 H 1.48504 * 109.46742 * 209.99752 * 23 21 19 26 26 H 1.48500 * 109.46979 * 329.99632 * 23 21 19 27 27 C 1.40874 * 119.67104 * 0.50127 * 18 17 16 28 28 C 1.36363 * 119.82875 * 359.75243 * 27 18 17 29 29 H 1.09001 * 109.46849 * 300.00044 * 1 2 3 30 30 H 1.08995 * 109.47384 * 59.99516 * 1 2 3 31 31 H 1.08995 * 109.47472 * 180.02562 * 1 2 3 32 32 H 1.07997 * 120.02189 * 0.02562 * 6 5 4 33 33 H 1.08006 * 119.96153 * 180.25998 * 7 6 5 34 34 H 1.08005 * 119.94144 * 179.74826 * 8 7 6 35 35 H 1.07999 * 119.98522 * 180.02562 * 9 8 7 36 36 H 0.97002 * 119.99146 * 354.40398 * 14 12 2 37 37 H 1.07995 * 119.91717 * 359.95577 * 16 15 14 38 38 H 1.08001 * 120.08413 * 179.74556 * 17 16 15 39 39 H 0.97003 * 119.99800 * 180.02562 * 22 21 19 40 40 H 1.08001 * 120.07793 * 179.72983 * 27 18 17 41 41 H 1.08007 * 119.91560 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.1120 0.0625 2.3044 6 6 1.6625 1.3745 2.3273 7 6 1.7661 2.1191 3.4864 8 6 2.3274 1.5615 4.6204 9 6 2.7813 0.2559 4.5997 10 6 2.6754 -0.4955 3.4438 11 17 3.2460 -2.1348 3.4177 12 6 2.0322 -0.7104 -1.2305 13 8 2.6528 -1.7466 -1.1216 14 7 1.7918 -0.1941 -2.4521 15 6 2.3534 -0.7853 -3.5807 16 6 3.6231 -1.3580 -3.5049 17 6 4.1817 -1.9347 -4.6073 18 6 3.4686 -1.9604 -5.8219 19 6 4.0378 -2.5601 -6.9659 20 1 4.6705 -3.4292 -6.8618 21 6 3.7826 -2.0287 -8.2347 22 7 3.1052 -0.9152 -8.3535 23 14 4.4085 -2.9085 -9.7590 24 1 3.3827 -3.8735 -10.2298 25 1 4.6801 -1.9140 -10.8280 26 1 5.6602 -3.6370 -9.4311 27 6 2.1869 -1.3799 -5.8906 28 6 1.6436 -0.8023 -4.7812 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.2276 1.8122 1.4409 33 1 1.4123 3.1394 3.5055 34 1 2.4110 2.1469 5.5241 35 1 3.2189 -0.1775 5.4868 36 1 1.2274 0.5893 -2.5449 37 1 4.1669 -1.3407 -2.5720 38 1 5.1665 -2.3741 -4.5481 39 1 2.9279 -0.5469 -9.2332 40 1 1.6362 -1.3920 -6.8196 41 1 0.6611 -0.3565 -4.8323 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012380804.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:36 Heat of formation + Delta-G solvation = -27.916424 kcal Electronic energy + Delta-G solvation = -26218.524519 eV Core-core repulsion = 22282.528895 eV Total energy + Delta-G solvation = -3935.995624 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.092 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.84666 -39.58551 -37.92820 -37.03113 -36.46200 -34.51778 -33.20631 -32.14458 -31.04908 -29.95090 -29.61967 -28.82766 -25.55953 -24.48229 -23.18354 -22.60808 -21.52272 -20.79795 -19.64026 -18.75230 -17.59631 -17.29228 -16.61685 -16.17996 -15.96066 -15.82015 -15.19397 -14.88407 -14.59895 -14.37485 -14.16565 -13.93516 -13.47473 -13.24037 -12.98193 -12.76778 -12.59166 -12.26891 -12.18359 -12.08709 -11.80445 -11.66253 -11.53694 -11.43334 -11.26444 -11.15234 -10.95459 -10.89861 -10.57955 -10.07301 -9.81885 -9.40196 -9.24615 -9.18489 -8.83288 -8.45680 -7.60771 -6.94698 -6.70433 -4.35646 0.80783 0.98881 2.04450 2.41224 2.58564 2.94827 3.03633 3.08523 3.12203 3.26933 3.30629 3.70218 3.95617 4.36556 4.43824 4.55376 4.62084 4.72414 4.77097 4.82719 4.91178 5.09171 5.29736 5.33770 5.37998 5.62168 5.74088 5.81805 5.84791 6.05364 6.12716 6.27912 6.34044 6.66250 6.82426 6.99828 7.02277 7.14111 7.24014 7.55718 7.63959 7.79969 8.01406 8.15947 8.24744 8.54978 8.64460 8.87808 8.94439 10.25275 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.024921 B = 0.002080 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.268791 B =13459.040711 C =14136.836769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.066 3.934 3 H 0.097 0.903 4 O -0.270 6.270 5 C 0.144 3.856 6 C -0.204 4.204 7 C -0.075 4.075 8 C -0.151 4.151 9 C -0.073 4.073 10 C -0.070 4.070 11 Cl -0.051 7.051 12 C 0.502 3.498 13 O -0.503 6.503 14 N -0.646 5.646 15 C 0.003 3.997 16 C -0.081 4.081 17 C -0.205 4.205 18 C 0.107 3.893 19 C -0.463 4.463 20 H 0.077 0.923 21 C 0.072 3.928 22 N -0.810 5.810 23 Si 0.913 3.087 24 H -0.269 1.269 25 H -0.278 1.278 26 H -0.263 1.263 27 C -0.139 4.139 28 C -0.116 4.116 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.139 0.861 33 H 0.131 0.869 34 H 0.132 0.868 35 H 0.139 0.861 36 H 0.395 0.605 37 H 0.101 0.899 38 H 0.097 0.903 39 H 0.279 0.721 40 H 0.122 0.878 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.117 8.882 20.411 23.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.006 3.994 3 H 0.115 0.885 4 O -0.181 6.181 5 C 0.097 3.903 6 C -0.223 4.223 7 C -0.093 4.093 8 C -0.169 4.169 9 C -0.092 4.092 10 C -0.097 4.097 11 Cl -0.022 7.022 12 C 0.286 3.714 13 O -0.376 6.376 14 N -0.291 5.291 15 C -0.089 4.089 16 C -0.101 4.101 17 C -0.225 4.225 18 C 0.105 3.895 19 C -0.493 4.493 20 H 0.095 0.905 21 C -0.144 4.144 22 N -0.436 5.436 23 Si 0.738 3.262 24 H -0.194 1.194 25 H -0.203 1.203 26 H -0.187 1.187 27 C -0.159 4.159 28 C -0.136 4.136 29 H 0.092 0.908 30 H 0.100 0.900 31 H 0.096 0.904 32 H 0.157 0.843 33 H 0.149 0.851 34 H 0.150 0.850 35 H 0.156 0.844 36 H 0.229 0.771 37 H 0.119 0.881 38 H 0.115 0.885 39 H 0.089 0.911 40 H 0.140 0.860 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.631 7.929 20.283 22.494 hybrid contribution -0.077 0.274 -0.855 0.901 sum -5.707 8.203 19.428 21.847 Atomic orbital electron populations 1.22340 0.92584 1.04750 1.03665 1.22305 0.95795 0.96964 0.84311 0.88495 1.86334 1.80290 1.36206 1.15308 1.18801 0.94671 0.90408 0.86452 1.21320 1.06847 0.93430 1.00673 1.21047 0.96568 0.99683 0.92010 1.21020 1.01764 0.94949 0.99185 1.20946 0.98334 0.93863 0.96051 1.20268 1.06376 0.88993 0.94104 1.98396 1.87384 1.17708 1.98685 1.19879 0.81843 0.85756 0.83877 1.90763 1.39071 1.22001 1.85796 1.42838 1.50504 1.30948 1.04779 1.17144 0.95165 1.10886 0.85680 1.20262 0.93078 0.99064 0.97661 1.20796 0.99611 1.07874 0.94188 1.17699 0.90467 0.89554 0.91811 1.19515 1.26840 1.12528 0.90441 0.90460 1.25871 0.93615 0.94203 1.00691 1.69783 1.31771 1.16331 1.25757 0.86229 0.80048 0.79698 0.80212 1.19431 1.20347 1.18701 1.20939 0.95824 1.02335 0.96834 1.20247 0.97757 1.02673 0.92896 0.90821 0.90023 0.90363 0.84324 0.85113 0.85014 0.84361 0.77076 0.88102 0.88457 0.91059 0.86037 0.88993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.64 9.11 37.16 0.34 -1.30 16 2 C 0.07 0.82 2.64 -27.89 -0.07 0.75 16 3 H 0.10 0.93 6.30 -51.93 -0.33 0.61 16 4 O -0.27 -3.93 8.80 -39.36 -0.35 -4.28 16 5 C 0.14 1.74 6.59 -39.20 -0.26 1.49 16 6 C -0.20 -1.84 8.25 -39.44 -0.33 -2.17 16 7 C -0.07 -0.55 10.04 -39.60 -0.40 -0.95 16 8 C -0.15 -1.09 10.04 -39.57 -0.40 -1.49 16 9 C -0.07 -0.65 9.83 -39.57 -0.39 -1.04 16 10 C -0.07 -0.83 6.33 -39.36 -0.25 -1.08 16 11 Cl -0.05 -0.67 28.50 -51.86 -1.48 -2.14 16 12 C 0.50 8.65 6.89 -10.98 -0.08 8.57 16 13 O -0.50 -11.17 14.27 -14.30 -0.20 -11.38 16 14 N -0.65 -10.81 5.27 -9.74 -0.05 -10.86 16 15 C 0.00 0.07 6.26 -83.57 -0.52 -0.46 16 16 C -0.08 -1.93 8.57 -39.79 -0.34 -2.27 16 17 C -0.20 -5.19 9.74 -39.25 -0.38 -5.57 16 18 C 0.11 2.86 5.50 -106.80 -0.59 2.27 16 19 C -0.46 -12.29 9.03 -37.86 -0.34 -12.63 16 20 H 0.08 1.99 7.85 -52.49 -0.41 1.58 16 21 C 0.07 1.80 5.31 -17.34 -0.09 1.70 16 22 N -0.81 -20.70 10.96 55.55 0.61 -20.09 16 23 Si 0.91 18.81 29.56 -169.99 -5.03 13.79 16 24 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 25 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 26 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 27 C -0.14 -3.52 8.57 -39.26 -0.34 -3.86 16 28 C -0.12 -2.56 9.90 -39.80 -0.39 -2.96 16 29 H 0.07 0.55 6.93 -51.93 -0.36 0.19 16 30 H 0.08 0.59 7.75 -51.93 -0.40 0.19 16 31 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.14 0.98 5.44 -52.49 -0.29 0.69 16 33 H 0.13 0.61 8.06 -52.48 -0.42 0.18 16 34 H 0.13 0.61 8.06 -52.48 -0.42 0.19 16 35 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 36 H 0.40 4.94 8.41 -40.82 -0.34 4.60 16 37 H 0.10 2.39 6.50 -52.49 -0.34 2.05 16 38 H 0.10 2.35 8.06 -52.49 -0.42 1.93 16 39 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 40 H 0.12 3.15 6.46 -52.49 -0.34 2.81 16 41 H 0.09 1.75 8.06 -52.48 -0.42 1.32 16 LS Contribution 363.66 15.07 5.48 5.48 Total: -1.00 -31.93 363.66 -10.32 -42.26 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -4.48 Total: 8.22 kcal Atomic # 6 Polarization: -16.16 SS G_CDS: -4.83 Total: -20.98 kcal Atomic # 7 Polarization: -31.51 SS G_CDS: 0.56 Total: -30.96 kcal Atomic # 8 Polarization: -15.11 SS G_CDS: -0.55 Total: -15.66 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.03 Total: 13.79 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -1.48 Total: -2.14 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.93 -10.32 -42.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012380804.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.342 kcal (2) G-P(sol) polarization free energy of solvation -31.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds