Wall clock time and date at job start Tue Mar 31 2020 07:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42895 * 114.00480 * 2 1 4 4 C 1.53002 * 109.47572 * 184.83327 * 3 2 1 5 5 N 1.46903 * 109.46737 * 63.82549 * 4 3 2 6 6 C 1.46895 * 111.00048 * 68.72383 * 5 4 3 7 7 C 1.53004 * 109.47403 * 58.30466 * 6 5 4 8 8 O 1.42901 * 109.46778 * 65.42315 * 7 6 5 9 9 C 1.42896 * 114.00299 * 183.92255 * 8 7 6 10 10 C 1.38070 * 110.99478 * 192.67501 * 5 4 3 11 11 N 1.32396 * 119.47056 * 343.79815 * 10 5 4 12 12 C 1.32379 * 122.53782 * 179.97438 * 11 10 5 13 13 N 1.38071 * 119.46604 * 180.02562 * 12 11 10 14 14 C 1.40563 * 121.06606 * 359.71622 * 12 11 10 15 15 C 1.43201 * 120.60863 * 180.31272 * 14 12 11 16 16 N 9.10513 * 168.52969 * 230.21289 * 2 1 3 17 17 C 1.42277 * 118.77518 * 0.57628 * 14 12 11 18 18 C 1.40447 * 121.11111 * 179.71578 * 17 14 12 19 19 H 1.08004 * 120.00313 * 45.11979 * 18 17 14 20 20 C 1.40525 * 119.99772 * 225.39274 * 18 17 14 21 21 N 1.30486 * 119.99717 * 15.66840 * 20 18 17 22 22 Si 1.86802 * 120.00297 * 195.65762 * 20 18 17 23 23 H 1.48499 * 109.46633 * 60.00338 * 22 20 18 24 24 H 1.48492 * 109.46981 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47271 * 300.00968 * 22 20 18 26 26 C 1.40527 * 119.45920 * 163.81740 * 10 5 4 27 27 C 1.43199 * 120.61166 * 0.02562 * 26 10 5 28 28 N 5.17222 * 119.76526 * 248.99574 * 2 1 3 29 29 H 1.09003 * 109.47227 * 304.85930 * 1 2 3 30 30 H 1.08999 * 109.47260 * 64.85521 * 1 2 3 31 31 H 1.08997 * 109.47626 * 184.85394 * 1 2 3 32 32 H 1.09006 * 109.47310 * 64.83482 * 3 2 1 33 33 H 1.09002 * 109.47049 * 304.83904 * 3 2 1 34 34 H 1.09007 * 109.46869 * 303.82824 * 4 3 2 35 35 H 1.08999 * 109.47135 * 183.82781 * 4 3 2 36 36 H 1.09000 * 109.47263 * 178.30849 * 6 5 4 37 37 H 1.09001 * 109.47085 * 298.30893 * 6 5 4 38 38 H 1.08997 * 109.47368 * 185.42355 * 7 6 5 39 39 H 1.08998 * 109.47188 * 305.42928 * 7 6 5 40 40 H 1.09009 * 109.46865 * 304.84518 * 9 8 7 41 41 H 1.08998 * 109.47226 * 64.83894 * 9 8 7 42 42 H 1.09002 * 109.47497 * 184.84243 * 9 8 7 43 43 H 0.96997 * 119.99917 * 0.02562 * 13 12 11 44 44 H 0.96995 * 119.99871 * 180.02562 * 13 12 11 45 45 H 0.97008 * 120.00221 * 174.93857 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5308 1.1866 -0.1215 5 7 3.8728 0.5825 -1.4162 6 6 3.5602 1.4967 -2.5227 7 6 4.3291 2.8061 -2.3352 8 8 5.7314 2.5554 -2.4480 9 6 6.5485 3.7012 -2.2004 10 6 5.1994 0.2012 -1.4491 11 7 6.0378 0.6813 -0.5439 12 6 7.3209 0.3564 -0.5186 13 7 8.1387 0.8946 0.4549 14 6 7.8627 -0.5327 -1.4629 15 6 9.2507 -0.8826 -1.4223 16 7 10.3522 -1.1587 -1.3914 17 6 7.0079 -1.0741 -2.4631 18 6 7.4988 -1.9621 -3.4342 19 1 8.1495 -2.7739 -3.1441 20 6 7.1479 -1.7911 -4.7842 21 7 6.6328 -0.6616 -5.1862 22 14 7.4192 -3.1803 -6.0031 23 1 6.6401 -4.3709 -5.5780 24 1 6.9706 -2.7502 -7.3517 25 1 8.8631 -3.5242 -6.0485 26 6 5.6378 -0.6900 -2.4433 27 6 4.7227 -1.2026 -3.4181 28 7 3.9967 -1.6093 -4.1915 29 1 -0.3634 0.5874 0.8433 30 1 -0.3634 0.4367 -0.9303 31 1 -0.3634 -1.0239 0.0870 32 1 1.7589 1.8151 0.9302 33 1 1.6218 1.8761 -0.8435 34 1 3.9118 0.5591 0.6842 35 1 3.9793 2.1777 -0.0532 36 1 3.8508 1.0367 -3.4672 37 1 2.4898 1.7022 -2.5328 38 1 4.0247 3.5191 -3.1014 39 1 4.1117 3.2172 -1.3494 40 1 6.2447 4.5137 -2.8606 41 1 6.4317 4.0134 -1.1626 42 1 7.5924 3.4507 -2.3892 43 1 7.7719 1.5052 1.1133 44 1 9.0800 0.6622 0.4805 45 1 6.4586 -0.5164 -6.1294 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012538071.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:11 Heat of formation + Delta-G solvation = 21.363486 kcal Electronic energy + Delta-G solvation = -31919.509762 eV Core-core repulsion = 27745.360507 eV Total energy + Delta-G solvation = -4174.149255 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -39.98380 -38.19181 -37.42448 -36.34034 -35.53273 -35.05347 -33.91990 -33.01086 -31.13918 -30.27658 -29.16050 -27.55472 -26.53250 -26.00256 -25.87122 -23.45897 -22.46260 -21.78696 -20.18623 -18.89700 -17.78188 -17.10696 -16.71247 -16.42600 -16.11984 -15.88661 -15.70329 -15.38014 -15.10911 -14.71425 -14.47692 -14.41751 -14.10998 -13.77360 -13.37995 -12.92427 -12.69976 -12.37975 -12.24150 -12.13495 -11.99674 -11.83794 -11.73370 -11.70460 -11.60445 -11.58171 -11.45266 -11.24385 -11.07552 -11.01956 -10.84539 -10.72564 -10.46004 -10.27420 -9.85391 -9.51961 -9.37410 -9.17861 -8.67749 -8.32003 -7.92091 -7.03833 -6.71182 -4.90306 1.93787 2.57878 3.04900 3.07332 3.13548 3.77580 3.83932 3.86236 3.93126 4.01025 4.21778 4.34946 4.37321 4.55461 4.80391 5.13287 5.18341 5.27684 5.29675 5.34813 5.40422 5.40895 5.43120 5.52537 5.56309 5.62046 5.65593 5.69367 5.71857 5.74776 5.89787 5.96518 6.04580 6.20240 6.34528 6.47844 6.75700 6.85762 7.07649 7.16969 7.37806 7.37959 7.56069 7.74072 7.87760 8.07126 8.24280 8.36335 8.49854 8.77119 9.14090 9.29654 9.91802 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.009634 B = 0.005234 C = 0.004255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2905.549516 B = 5348.699846 C = 6578.822410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.371 6.371 3 C 0.062 3.938 4 C 0.065 3.935 5 N -0.469 5.469 6 C 0.060 3.940 7 C 0.025 3.975 8 O -0.352 6.352 9 C 0.043 3.957 10 C 0.435 3.565 11 N -0.622 5.622 12 C 0.499 3.501 13 N -0.854 5.854 14 C -0.266 4.266 15 C 0.309 3.691 16 N -0.507 5.507 17 C 0.250 3.750 18 C -0.459 4.459 19 H 0.094 0.906 20 C 0.087 3.913 21 N -0.752 5.752 22 Si 0.908 3.092 23 H -0.257 1.257 24 H -0.274 1.274 25 H -0.262 1.262 26 C -0.176 4.176 27 C 0.341 3.659 28 N -0.509 5.509 29 H 0.034 0.966 30 H 0.037 0.963 31 H 0.082 0.918 32 H 0.049 0.951 33 H 0.045 0.955 34 H 0.092 0.908 35 H 0.068 0.932 36 H 0.097 0.903 37 H 0.090 0.910 38 H 0.047 0.953 39 H 0.050 0.950 40 H 0.029 0.971 41 H 0.033 0.967 42 H 0.081 0.919 43 H 0.396 0.604 44 H 0.401 0.599 45 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.781 10.124 8.040 15.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.289 6.289 3 C -0.016 4.016 4 C -0.063 4.063 5 N -0.186 5.186 6 C -0.066 4.066 7 C -0.053 4.053 8 O -0.270 6.270 9 C -0.054 4.054 10 C 0.204 3.796 11 N -0.349 5.349 12 C 0.258 3.742 13 N -0.395 5.395 14 C -0.281 4.281 15 C -0.002 4.002 16 N -0.187 5.187 17 C 0.238 3.762 18 C -0.488 4.488 19 H 0.112 0.888 20 C -0.138 4.138 21 N -0.374 5.374 22 Si 0.731 3.269 23 H -0.181 1.181 24 H -0.199 1.199 25 H -0.187 1.187 26 C -0.189 4.189 27 C 0.029 3.971 28 N -0.188 5.188 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.101 0.899 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.110 0.890 35 H 0.086 0.914 36 H 0.115 0.885 37 H 0.108 0.892 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.047 0.953 41 H 0.051 0.949 42 H 0.099 0.901 43 H 0.224 0.776 44 H 0.230 0.770 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.853 8.983 7.172 13.921 hybrid contribution 0.654 0.681 -0.644 1.143 sum -7.199 9.664 6.528 13.705 Atomic orbital electron populations 1.22692 0.82138 1.02398 0.99297 1.88066 1.18509 1.27185 1.95137 1.22702 0.94357 0.85219 0.99291 1.22048 0.92101 1.00214 0.91907 1.59241 1.16087 1.39338 1.03961 1.22428 0.98908 0.89889 0.95421 1.23166 0.83944 0.98522 0.99686 1.88185 1.14845 1.32705 1.91256 1.22563 0.95977 0.88572 0.98319 1.18579 0.85885 0.87307 0.87807 1.66639 1.02137 1.33979 1.32101 1.17522 0.87040 0.85318 0.84293 1.42066 1.10969 1.53163 1.33341 1.16234 0.86577 1.15409 1.09838 1.25351 0.92135 0.91444 0.91233 1.81055 1.12787 1.12933 1.11931 1.16907 0.87380 0.85056 0.86814 1.19470 1.26377 1.11772 0.91200 0.88770 1.25910 0.91891 0.96322 0.99669 1.69518 1.26840 1.22359 1.18670 0.86311 0.79871 0.81867 0.78828 1.18125 1.19872 1.18671 1.16193 0.91247 1.11297 1.00119 1.24712 0.90375 0.91195 0.90838 1.80892 1.13365 1.12423 1.12146 0.94743 0.94465 0.89946 0.93244 0.93685 0.88969 0.91408 0.88454 0.89203 0.93473 0.93224 0.95284 0.94858 0.90079 0.77589 0.76990 0.89764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 101.05 1.11 1.45 16 2 O -0.37 -5.34 10.63 -35.23 -0.37 -5.72 16 3 C 0.06 0.74 6.02 37.16 0.22 0.96 16 4 C 0.06 0.91 4.29 -3.82 -0.02 0.89 16 5 N -0.47 -8.11 4.17 -173.03 -0.72 -8.83 16 6 C 0.06 0.95 5.40 -3.82 -0.02 0.93 16 7 C 0.03 0.36 5.75 37.16 0.21 0.57 16 8 O -0.35 -6.04 7.86 -35.23 -0.28 -6.31 16 9 C 0.04 0.59 11.01 101.05 1.11 1.70 16 10 C 0.43 8.61 4.09 -155.40 -0.64 7.97 16 11 N -0.62 -11.32 7.79 -11.33 -0.09 -11.41 16 12 C 0.50 9.23 7.74 -155.40 -1.20 8.02 16 13 N -0.85 -12.19 8.96 31.23 0.28 -11.91 16 14 C -0.27 -5.72 5.84 -105.54 -0.62 -6.33 16 15 C 0.31 6.70 13.22 -22.47 -0.30 6.40 16 16 N -0.51 -11.30 18.54 41.84 0.78 -10.52 16 17 C 0.25 5.93 5.31 -105.95 -0.56 5.37 16 18 C -0.46 -11.34 7.90 -37.89 -0.30 -11.64 16 19 H 0.09 2.31 7.84 -52.48 -0.41 1.90 16 20 C 0.09 2.11 4.30 -17.26 -0.07 2.03 16 21 N -0.75 -18.49 11.12 55.58 0.62 -17.87 16 22 Si 0.91 19.26 29.60 -169.99 -5.03 14.23 16 23 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 24 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 25 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 26 C -0.18 -4.02 5.35 -105.55 -0.56 -4.59 16 27 C 0.34 8.23 9.38 -22.47 -0.21 8.02 16 28 N -0.51 -12.66 18.51 41.84 0.77 -11.89 16 29 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.04 0.49 6.51 -51.93 -0.34 0.15 16 34 H 0.09 1.42 7.74 -51.93 -0.40 1.02 16 35 H 0.07 0.89 5.69 -51.93 -0.30 0.59 16 36 H 0.10 1.89 6.24 -51.93 -0.32 1.57 16 37 H 0.09 1.20 6.56 -51.93 -0.34 0.86 16 38 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.05 0.62 5.91 -51.93 -0.31 0.31 16 40 H 0.03 0.35 8.14 -51.92 -0.42 -0.07 16 41 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 43 H 0.40 4.65 8.94 -40.82 -0.37 4.28 16 44 H 0.40 5.55 7.62 -40.82 -0.31 5.24 16 45 H 0.29 6.79 8.30 -40.82 -0.34 6.45 16 LS Contribution 381.60 15.07 5.75 5.75 Total: -1.00 -28.99 381.60 -5.74 -34.74 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -5.61 Total: 7.99 kcal Atomic # 6 Polarization: 23.59 SS G_CDS: -1.84 Total: 21.76 kcal Atomic # 7 Polarization: -74.07 SS G_CDS: 1.64 Total: -72.43 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: -0.65 Total: -12.03 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.03 Total: 14.23 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -28.99 -5.74 -34.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012538071.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.099 kcal (2) G-P(sol) polarization free energy of solvation -28.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds