Wall clock time and date at job start Tue Mar 31 2020 05:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30868 * 1 3 3 Si 1.86797 * 119.99953 * 2 1 4 4 H 1.48498 * 109.47377 * 240.00214 * 3 2 1 5 5 H 1.48498 * 109.47192 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47356 * 120.00441 * 3 2 1 7 7 C 1.39905 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99923 * 175.56350 * 7 2 1 9 9 C 1.41150 * 120.00031 * 355.55302 * 7 2 1 10 10 C 1.40876 * 120.16525 * 214.78159 * 9 7 2 11 11 C 1.36371 * 119.82717 * 180.02562 * 10 9 7 12 12 C 1.39478 * 120.17326 * 0.02562 * 11 10 9 13 13 N 1.39230 * 119.83470 * 179.97438 * 12 11 10 14 14 C 1.34776 * 120.00040 * 35.28811 * 13 12 11 15 15 O 1.21277 * 120.00072 * 355.70162 * 14 13 12 16 16 C 1.50707 * 119.99930 * 175.70977 * 14 13 12 17 17 C 1.52998 * 109.47264 * 179.97438 * 16 14 13 18 18 N 1.46493 * 109.47431 * 180.02562 * 17 16 14 19 19 C 1.34777 * 120.00220 * 180.27820 * 18 17 16 20 20 O 1.21698 * 119.99921 * 359.71894 * 19 18 17 21 21 C 1.46582 * 119.99976 * 179.72383 * 19 18 17 22 22 C 1.36653 * 125.45724 * 179.97438 * 21 19 18 23 23 C 1.37473 * 113.29612 * 179.97438 * 22 21 19 24 24 C 1.33816 * 115.10336 * 359.97438 * 23 22 21 25 25 S 1.70617 * 110.95173 * 359.76320 * 24 23 22 26 26 C 1.39489 * 120.33018 * 0.24723 * 12 11 10 27 27 C 1.36377 * 120.16637 * 359.48818 * 26 12 11 28 28 H 0.97002 * 120.00166 * 359.97438 * 1 2 3 29 29 H 1.08006 * 120.08180 * 0.02562 * 10 9 7 30 30 H 1.08005 * 119.91253 * 179.97438 * 11 10 9 31 31 H 0.97000 * 120.00194 * 215.27934 * 13 12 11 32 32 H 1.08999 * 109.47430 * 59.99431 * 16 14 13 33 33 H 1.09002 * 109.46727 * 299.99830 * 16 14 13 34 34 H 1.08999 * 109.47111 * 59.99543 * 17 16 14 35 35 H 1.09002 * 109.46919 * 300.00050 * 17 16 14 36 36 H 0.97000 * 120.00154 * 359.97438 * 18 17 16 37 37 H 1.07997 * 123.34899 * 359.94175 * 22 21 19 38 38 H 1.08001 * 122.44941 * 180.02562 * 23 22 21 39 39 H 1.07994 * 124.52585 * 179.97438 * 24 23 22 40 40 H 1.07994 * 119.91285 * 179.75009 * 26 12 11 41 41 H 1.08003 * 120.08530 * 180.25511 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 3.0964 1.6965 -1.2125 5 1 1.2777 2.7464 0.0006 6 1 3.0965 1.6964 1.2124 7 6 2.0082 -1.2116 -0.0005 8 1 3.0858 -1.2130 -0.0729 9 6 1.3056 -2.4322 0.0937 10 6 1.8650 -3.5187 0.7947 11 6 1.1804 -4.6949 0.8809 12 6 -0.0701 -4.8242 0.2770 13 7 -0.7627 -6.0285 0.3690 14 6 -0.6808 -6.7688 1.4923 15 8 0.0565 -6.4260 2.3921 16 6 -1.5054 -8.0228 1.6301 17 6 -1.2271 -8.6694 2.9885 18 7 -2.0282 -9.8886 3.1223 19 6 -1.9501 -10.6262 4.2476 20 8 -1.2102 -10.2822 5.1505 21 6 -2.7562 -11.8429 4.3838 22 6 -2.7638 -12.6711 5.4707 23 6 -3.6147 -13.7420 5.3322 24 6 -4.2820 -13.7907 4.1734 25 16 -3.8744 -12.4660 3.1784 26 6 -0.6280 -3.7547 -0.4236 27 6 0.0423 -2.5705 -0.5139 28 1 -0.4850 0.8400 0.0004 29 1 2.8335 -3.4202 1.2625 30 1 1.6082 -5.5289 1.4177 31 1 -1.3042 -6.3348 -0.3752 32 1 -1.2416 -8.7203 0.8352 33 1 -2.5635 -7.7716 1.5568 34 1 -1.4906 -7.9720 3.7837 35 1 -0.1689 -8.9206 3.0614 36 1 -2.6181 -10.1627 2.4028 37 1 -2.1610 -12.5016 6.3506 38 1 -3.7364 -14.4889 6.1028 39 1 -4.9873 -14.5634 3.9052 40 1 -1.5949 -3.8635 -0.8921 41 1 -0.3927 -1.7420 -1.0532 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012800006.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:05 Heat of formation + Delta-G solvation = -18.368313 kcal Electronic energy + Delta-G solvation = -25026.186190 eV Core-core repulsion = 21190.366972 eV Total energy + Delta-G solvation = -3835.819218 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 344.098 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.15390 -39.62873 -37.91564 -37.33399 -35.36822 -34.45143 -32.96796 -31.59565 -29.99938 -29.57941 -28.74123 -25.95404 -24.97183 -23.59928 -21.68487 -21.47900 -20.79024 -19.87946 -19.55480 -18.86071 -17.38744 -16.96075 -16.61117 -16.21186 -16.10944 -15.87185 -15.23693 -15.06997 -14.99995 -14.00197 -13.91385 -13.75785 -13.60199 -13.23865 -13.17845 -12.85035 -12.72262 -12.61599 -12.15554 -12.08286 -11.73766 -11.62699 -11.46203 -11.36568 -11.13534 -11.00687 -10.73825 -10.39031 -10.05671 -9.51145 -9.50011 -9.45231 -9.22901 -9.15515 -9.05534 -8.89723 -7.56185 -6.88393 -6.62713 -4.35364 0.07903 1.00888 1.40827 1.98998 2.51160 2.71464 2.91523 3.00983 3.07924 3.09399 3.12019 3.31750 3.74268 3.97773 4.37917 4.52236 4.65850 4.69032 4.85929 4.90816 5.01219 5.03859 5.30628 5.50747 5.64258 5.70235 5.72930 5.85452 5.89105 6.08442 6.17112 6.43432 6.72905 6.89409 7.05517 7.10948 7.19157 7.28381 7.62519 7.71957 7.84086 7.86313 8.04853 8.22864 8.30320 8.60305 8.70262 8.91800 8.98501 10.28382 Molecular weight = 344.10amu Principal moments of inertia in cm(-1) A = 0.036657 B = 0.001562 C = 0.001532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.651564 B =17918.849147 C =18277.320102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.070 3.930 3 Si 0.916 3.084 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.461 4.461 8 H 0.076 0.924 9 C 0.100 3.900 10 C -0.206 4.206 11 C -0.085 4.085 12 C 0.000 4.000 13 N -0.650 5.650 14 C 0.502 3.498 15 O -0.526 6.526 16 C -0.152 4.152 17 C 0.135 3.865 18 N -0.727 5.727 19 C 0.589 3.411 20 O -0.522 6.522 21 C -0.264 4.264 22 C -0.056 4.056 23 C -0.149 4.149 24 C -0.230 4.230 25 S 0.198 5.802 26 C -0.120 4.120 27 C -0.142 4.142 28 H 0.278 0.722 29 H 0.096 0.904 30 H 0.108 0.892 31 H 0.396 0.604 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.396 0.604 37 H 0.155 0.845 38 H 0.146 0.854 39 H 0.169 0.831 40 H 0.091 0.909 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.016 -24.328 1.862 27.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.145 4.145 3 Si 0.741 3.259 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.492 4.492 8 H 0.094 0.906 9 C 0.098 3.902 10 C -0.226 4.226 11 C -0.105 4.105 12 C -0.092 4.092 13 N -0.293 5.293 14 C 0.287 3.713 15 O -0.403 6.403 16 C -0.193 4.193 17 C 0.012 3.988 18 N -0.379 5.379 19 C 0.374 3.626 20 O -0.399 6.399 21 C -0.385 4.385 22 C -0.089 4.089 23 C -0.180 4.180 24 C -0.367 4.367 25 S 0.464 5.536 26 C -0.140 4.140 27 C -0.162 4.162 28 H 0.089 0.911 29 H 0.114 0.886 30 H 0.126 0.874 31 H 0.229 0.771 32 H 0.115 0.885 33 H 0.116 0.884 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.230 0.770 37 H 0.173 0.827 38 H 0.164 0.836 39 H 0.187 0.813 40 H 0.109 0.891 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -11.615 -23.176 1.717 25.981 hybrid contribution -0.066 -0.137 0.771 0.786 sum -11.682 -23.314 2.488 26.195 Atomic orbital electron populations 1.69748 1.07293 1.28835 1.38030 1.25879 0.94950 1.01175 0.92527 0.86240 0.79796 0.80071 0.79787 1.19043 1.20430 1.19084 1.19477 0.94738 0.90238 1.44734 0.90618 1.17732 0.92294 0.92006 0.88199 1.20817 1.01266 0.94961 1.05509 1.20405 0.92767 0.97899 0.99405 1.17261 0.94281 0.85849 1.11797 1.42964 1.48809 1.21360 1.16133 1.20185 0.83555 0.85051 0.82481 1.90736 1.38912 1.70772 1.39866 1.21793 1.01868 0.96711 0.98936 1.21109 0.96300 0.84737 0.96639 1.45861 1.46568 1.26854 1.18626 1.16911 0.81515 0.81772 0.82383 1.90880 1.38970 1.70391 1.39634 1.24686 1.08736 1.03567 1.01473 1.20858 0.97608 0.92296 0.98173 1.20085 0.98902 1.00365 0.98670 1.25334 1.07054 1.04673 0.99683 1.82971 1.35339 1.16786 1.18465 1.20310 0.98328 0.93160 1.02237 1.21188 0.97304 0.95553 1.02124 0.91075 0.88565 0.87433 0.77066 0.88456 0.88354 0.89943 0.89987 0.76997 0.82743 0.83589 0.81308 0.89095 0.85040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.08 10.60 55.55 0.59 -20.49 16 2 C 0.07 1.77 5.42 -17.34 -0.09 1.67 16 3 Si 0.92 19.03 29.56 -169.99 -5.03 14.00 16 4 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 5 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 6 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 7 C -0.46 -12.31 9.02 -37.85 -0.34 -12.65 16 8 H 0.08 1.94 7.85 -52.48 -0.41 1.52 16 9 C 0.10 2.68 5.55 -106.80 -0.59 2.09 16 10 C -0.21 -5.21 9.74 -39.26 -0.38 -5.59 16 11 C -0.08 -2.02 8.61 -39.79 -0.34 -2.36 16 12 C 0.00 0.01 6.31 -83.57 -0.53 -0.52 16 13 N -0.65 -10.60 5.30 -9.74 -0.05 -10.66 16 14 C 0.50 8.00 7.66 -10.98 -0.08 7.92 16 15 O -0.53 -10.93 13.40 5.56 0.07 -10.85 16 16 C -0.15 -1.51 5.82 -27.88 -0.16 -1.67 16 17 C 0.14 1.61 4.96 -4.05 -0.02 1.59 16 18 N -0.73 -7.05 5.55 -61.66 -0.34 -7.39 16 19 C 0.59 7.08 7.78 -12.90 -0.10 6.97 16 20 O -0.52 -8.46 16.84 5.19 0.09 -8.37 16 21 C -0.26 -2.45 6.45 -36.79 -0.24 -2.69 16 22 C -0.06 -0.48 10.01 -40.43 -0.40 -0.88 16 23 C -0.15 -0.93 10.15 -41.41 -0.42 -1.35 16 24 C -0.23 -1.23 10.92 29.18 0.32 -0.91 16 25 S 0.20 1.16 22.16 -107.50 -2.38 -1.22 16 26 C -0.12 -2.68 9.90 -39.79 -0.39 -3.08 16 27 C -0.14 -3.61 8.62 -39.26 -0.34 -3.95 16 28 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 29 H 0.10 2.33 8.06 -52.48 -0.42 1.90 16 30 H 0.11 2.53 6.22 -52.48 -0.33 2.20 16 31 H 0.40 4.80 8.82 -40.82 -0.36 4.44 16 32 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.08 1.16 8.10 -51.93 -0.42 0.74 16 35 H 0.08 1.13 8.10 -51.93 -0.42 0.71 16 36 H 0.40 2.57 7.59 -40.82 -0.31 2.26 16 37 H 0.16 1.30 8.06 -52.49 -0.42 0.88 16 38 H 0.15 0.60 8.06 -52.49 -0.42 0.18 16 39 H 0.17 0.49 8.06 -52.49 -0.42 0.06 16 40 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 41 H 0.13 3.46 6.13 -52.48 -0.32 3.14 16 LS Contribution 369.33 15.07 5.57 5.57 Total: -1.00 -33.69 369.33 -10.27 -43.97 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -4.67 Total: 10.87 kcal Atomic # 6 Polarization: -11.30 SS G_CDS: -4.12 Total: -15.42 kcal Atomic # 7 Polarization: -38.73 SS G_CDS: 0.19 Total: -38.54 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: 0.16 Total: -19.22 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.03 Total: 14.00 kcal Atomic # 16 Polarization: 1.16 SS G_CDS: -2.38 Total: -1.22 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.69 -10.27 -43.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012800006.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.597 kcal (2) G-P(sol) polarization free energy of solvation -33.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds