Wall clock time and date at job start Tue Mar 31 2020 05:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46509 * 119.99994 * 2 1 4 4 C 1.34771 * 120.00430 * 179.97438 * 2 1 3 5 5 O 1.21280 * 120.00014 * 0.02562 * 4 2 1 6 6 C 1.50701 * 120.00458 * 180.02562 * 4 2 1 7 7 N 1.46895 * 109.47513 * 180.02562 * 6 4 2 8 8 C 1.46897 * 111.00322 * 66.04099 * 7 6 4 9 9 C 1.46894 * 111.00365 * 190.00175 * 7 6 4 10 10 C 1.50700 * 109.47658 * 169.99661 * 9 7 6 11 11 N 1.29825 * 118.34554 * 359.97438 * 10 9 7 12 12 C 1.35634 * 121.62648 * 179.97438 * 11 10 9 13 13 C 1.39635 * 121.62692 * 180.02562 * 12 11 10 14 14 C 1.37705 * 119.69433 * 179.97438 * 13 12 11 15 15 C 1.38875 * 120.83010 * 0.02562 * 14 13 12 16 16 C 1.37799 * 120.56749 * 359.96866 * 15 14 13 17 17 C 1.39364 * 119.51736 * 0.03111 * 16 15 14 18 18 C 1.46959 * 121.90337 * 180.02562 * 17 16 15 19 19 O 1.21722 * 121.29118 * 359.97438 * 18 17 16 20 20 N 1.35346 * 117.42341 * 179.97438 * 18 17 16 21 21 C 1.37111 * 119.71782 * 180.02562 * 20 18 17 22 22 H 1.07994 * 120.00446 * 134.78686 * 21 20 18 23 23 C 1.39081 * 119.99397 * 314.78919 * 21 20 18 24 24 N 1.31258 * 119.99403 * 160.64138 * 23 21 20 25 25 Si 1.86798 * 120.00228 * 340.63854 * 23 21 20 26 26 H 1.48500 * 109.47053 * 95.24881 * 25 23 21 27 27 H 1.48502 * 109.46838 * 215.24309 * 25 23 21 28 28 H 1.48498 * 109.47402 * 335.24507 * 25 23 21 29 29 H 1.09003 * 109.46785 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47383 * 300.00266 * 1 2 3 31 31 H 1.08998 * 109.46663 * 60.00279 * 1 2 3 32 32 H 1.08996 * 109.47236 * 270.00208 * 3 2 1 33 33 H 1.08999 * 109.46629 * 29.99738 * 3 2 1 34 34 H 1.08997 * 109.46945 * 149.99613 * 3 2 1 35 35 H 1.08998 * 109.47158 * 59.99934 * 6 4 2 36 36 H 1.09004 * 109.46878 * 300.00444 * 6 4 2 37 37 H 1.08999 * 109.47169 * 183.95765 * 8 7 6 38 38 H 1.09002 * 109.47258 * 303.96118 * 8 7 6 39 39 H 1.09005 * 109.46699 * 63.95911 * 8 7 6 40 40 H 1.08997 * 109.47455 * 49.99356 * 9 7 6 41 41 H 1.09002 * 109.47222 * 289.99806 * 9 7 6 42 42 H 1.07997 * 120.15157 * 359.97438 * 13 12 11 43 43 H 1.08002 * 119.58931 * 180.27598 * 14 13 12 44 44 H 1.08002 * 119.71655 * 180.02562 * 15 14 13 45 45 H 1.07995 * 120.23964 * 180.02562 * 16 15 14 46 46 H 0.96997 * 119.99848 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1389 -1.1671 0.0005 5 8 1.5326 -2.2175 0.0005 6 6 3.6459 -1.1671 0.0011 7 7 4.1357 -2.5520 0.0010 8 6 3.7867 -3.2338 -1.2525 9 6 5.5844 -2.5982 0.2397 10 6 6.0093 -4.0245 0.4770 11 7 5.1017 -4.9521 0.4412 12 6 5.4101 -6.2571 0.6448 13 6 4.4341 -7.2549 0.6058 14 6 4.7918 -8.5677 0.8178 15 6 6.1127 -8.9135 1.0709 16 6 7.0941 -7.9471 1.1143 17 6 6.7534 -6.6125 0.9025 18 6 7.7573 -5.5398 0.9365 19 8 8.9311 -5.7790 1.1528 20 7 7.3264 -4.2755 0.7180 21 6 8.2232 -3.2386 0.7386 22 1 8.1929 -2.4830 -0.0324 23 6 9.1720 -3.1600 1.7524 24 7 10.2469 -2.4244 1.5896 25 14 8.9168 -4.1011 3.3457 26 1 9.6290 -5.4020 3.2717 27 1 9.4525 -3.3073 4.4806 28 1 7.4660 -4.3420 3.5513 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 2.3792 1.5835 -1.0276 33 1 1.6084 2.0284 0.5138 34 1 3.1499 1.1385 0.5139 35 1 4.0089 -0.6531 0.8911 36 1 4.0096 -0.6534 -0.8889 37 1 4.0989 -4.2767 -1.1980 38 1 2.7085 -3.1847 -1.4048 39 1 4.2938 -2.7457 -2.0849 40 1 5.8278 -1.9962 1.1151 41 1 6.1088 -2.2028 -0.6302 42 1 3.4035 -6.9982 0.4103 43 1 4.0362 -9.3386 0.7828 44 1 6.3733 -9.9488 1.2341 45 1 8.1198 -8.2220 1.3112 46 1 10.9085 -2.3692 2.2968 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012874073.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:32 Heat of formation + Delta-G solvation = 25.688815 kcal Electronic energy + Delta-G solvation = -30771.227354 eV Core-core repulsion = 26662.691571 eV Total energy + Delta-G solvation = -4108.535783 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.87021 -39.93438 -37.87155 -37.40326 -35.93605 -35.35555 -33.89421 -32.23593 -30.65891 -30.29257 -28.96378 -27.51634 -27.36126 -25.87948 -25.69433 -23.56051 -22.78468 -21.45520 -20.83539 -19.24967 -18.84861 -17.98906 -17.41670 -16.92384 -16.20925 -16.09612 -15.94278 -15.28316 -15.06663 -14.77964 -14.38605 -14.35341 -14.03553 -13.85785 -13.52714 -13.40852 -13.06136 -12.91125 -12.88062 -12.82435 -12.74483 -12.63256 -12.29893 -12.20093 -12.14645 -11.55855 -11.52550 -11.35244 -11.23672 -11.04722 -10.80499 -10.60650 -10.30475 -9.70869 -9.37648 -9.09083 -8.90263 -8.81111 -8.76556 -8.50912 -7.98769 -7.24138 -6.77231 -4.62092 1.29113 1.44535 2.66324 2.81660 2.95814 3.10586 3.21529 3.31680 3.59287 3.65970 4.10722 4.28455 4.54918 4.56144 4.68058 4.84654 4.90950 5.06539 5.14632 5.20542 5.21895 5.28789 5.32433 5.38997 5.42224 5.44524 5.57298 5.66487 5.71033 5.74049 5.90141 5.95718 6.00378 6.06449 6.28959 6.32711 6.50740 6.65307 6.70210 6.88820 6.92014 7.07665 7.20437 7.28609 7.36489 7.40581 7.44555 7.92091 8.22347 8.25581 8.64700 8.95035 9.09972 10.24076 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.010589 B = 0.004073 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2643.732915 B = 6873.718348 C = 8950.899808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.631 5.631 3 C 0.078 3.922 4 C 0.515 3.485 5 O -0.512 6.512 6 C 0.037 3.963 7 N -0.504 5.504 8 C 0.018 3.982 9 C 0.124 3.876 10 C 0.371 3.629 11 N -0.529 5.529 12 C 0.167 3.833 13 C -0.124 4.124 14 C -0.086 4.086 15 C -0.169 4.169 16 C -0.041 4.041 17 C -0.214 4.214 18 C 0.497 3.503 19 O -0.513 6.513 20 N -0.372 5.372 21 C -0.383 4.383 22 H 0.119 0.881 23 C 0.110 3.890 24 N -0.824 5.824 25 Si 0.889 3.111 26 H -0.249 1.249 27 H -0.287 1.287 28 H -0.270 1.270 29 H 0.086 0.914 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.104 0.896 36 H 0.062 0.938 37 H 0.098 0.902 38 H 0.077 0.923 39 H 0.007 0.993 40 H 0.109 0.891 41 H 0.065 0.935 42 H 0.130 0.870 43 H 0.121 0.879 44 H 0.119 0.881 45 H 0.126 0.874 46 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.650 4.934 -2.974 15.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.367 5.367 3 C -0.065 4.065 4 C 0.303 3.697 5 O -0.386 6.386 6 C -0.094 4.094 7 N -0.228 5.228 8 C -0.129 4.129 9 C -0.005 4.005 10 C 0.108 3.892 11 N -0.255 5.255 12 C 0.052 3.948 13 C -0.144 4.144 14 C -0.106 4.106 15 C -0.188 4.188 16 C -0.061 4.061 17 C -0.221 4.221 18 C 0.294 3.706 19 O -0.390 6.390 20 N -0.078 5.078 21 C -0.509 4.509 22 H 0.136 0.864 23 C -0.107 4.107 24 N -0.453 5.453 25 Si 0.716 3.284 26 H -0.173 1.173 27 H -0.214 1.214 28 H -0.194 1.194 29 H 0.105 0.895 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.122 0.878 36 H 0.079 0.921 37 H 0.116 0.884 38 H 0.095 0.905 39 H 0.025 0.975 40 H 0.127 0.873 41 H 0.082 0.918 42 H 0.148 0.852 43 H 0.139 0.861 44 H 0.137 0.863 45 H 0.144 0.856 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -15.006 4.137 -2.534 15.771 hybrid contribution 1.334 0.056 0.287 1.366 sum -13.672 4.193 -2.248 14.476 Atomic orbital electron populations 1.21617 0.79482 1.04169 1.00802 1.47772 1.07003 1.06476 1.75495 1.21794 0.97460 0.85354 1.01910 1.20673 0.90220 0.83080 0.75716 1.90685 1.69833 1.30545 1.47539 1.22000 0.92057 0.92351 1.02997 1.61334 1.12453 1.11795 1.37207 1.22726 1.01828 1.01513 0.86847 1.20810 0.86699 0.90308 1.02733 1.22764 0.79625 0.95908 0.90938 1.68577 1.30748 0.98628 1.27529 1.18908 0.90669 0.91297 0.93947 1.20690 0.98795 0.91185 1.03693 1.21050 0.96016 0.95786 0.97777 1.20899 0.93071 0.98819 1.06052 1.20922 0.99584 0.91077 0.94501 1.20777 0.94247 0.95217 1.11874 1.18617 0.88601 0.82507 0.80854 1.90705 1.17434 1.82013 1.48865 1.42459 1.06552 1.07981 1.50770 1.19222 1.12188 1.05292 1.14192 0.86393 1.25250 0.92888 0.93794 0.98729 1.69640 1.06121 1.35836 1.33694 0.86609 0.79905 0.81407 0.80488 1.17336 1.21431 1.19445 0.89507 0.92528 0.92623 0.92580 0.91096 0.90633 0.87763 0.92054 0.88419 0.90478 0.97457 0.87301 0.91762 0.85184 0.86145 0.86281 0.85607 0.90506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.69 10.69 59.85 0.64 1.33 16 2 N -0.63 -6.27 3.27 -189.51 -0.62 -6.90 16 3 C 0.08 0.49 10.29 59.85 0.62 1.11 16 4 C 0.52 6.87 7.37 -10.99 -0.08 6.79 16 5 O -0.51 -8.82 13.66 5.56 0.08 -8.74 16 6 C 0.04 0.46 4.00 -4.98 -0.02 0.44 16 7 N -0.50 -8.16 4.16 -245.83 -1.02 -9.18 16 8 C 0.02 0.30 8.80 60.06 0.53 0.83 16 9 C 0.12 2.16 4.12 -4.98 -0.02 2.14 16 10 C 0.37 7.97 7.22 -154.88 -1.12 6.85 16 11 N -0.53 -11.19 7.06 -8.10 -0.06 -11.24 16 12 C 0.17 3.51 6.63 -84.49 -0.56 2.95 16 13 C -0.12 -2.17 10.03 -39.26 -0.39 -2.56 16 14 C -0.09 -1.31 10.00 -39.54 -0.40 -1.71 16 15 C -0.17 -2.70 10.02 -39.51 -0.40 -3.10 16 16 C -0.04 -0.81 9.68 -39.32 -0.38 -1.19 16 17 C -0.21 -4.82 5.89 -104.78 -0.62 -5.44 16 18 C 0.50 12.76 5.85 -12.47 -0.07 12.69 16 19 O -0.51 -14.37 12.75 5.17 0.07 -14.31 16 20 N -0.37 -9.12 2.26 -59.56 -0.13 -9.26 16 21 C -0.38 -9.84 8.55 -14.88 -0.13 -9.96 16 22 H 0.12 2.98 7.37 -52.49 -0.39 2.59 16 23 C 0.11 2.94 4.86 -17.48 -0.08 2.86 16 24 N -0.82 -22.40 13.95 55.50 0.77 -21.63 16 25 Si 0.89 22.51 24.99 -169.99 -4.25 18.26 16 26 H -0.25 -6.66 6.46 56.52 0.36 -6.29 16 27 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 28 H -0.27 -6.94 7.11 56.52 0.40 -6.54 16 29 H 0.09 0.91 6.90 -51.93 -0.36 0.55 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.07 0.33 8.07 -51.93 -0.42 -0.09 16 34 H 0.07 0.43 6.44 -51.93 -0.33 0.10 16 35 H 0.10 1.10 7.19 -51.93 -0.37 0.73 16 36 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 37 H 0.10 1.77 5.64 -51.93 -0.29 1.48 16 38 H 0.08 1.27 5.83 -51.93 -0.30 0.97 16 39 H 0.01 0.10 8.14 -51.93 -0.42 -0.32 16 40 H 0.11 1.83 7.83 -51.93 -0.41 1.42 16 41 H 0.06 1.06 7.61 -51.93 -0.40 0.67 16 42 H 0.13 2.07 8.06 -52.49 -0.42 1.65 16 43 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 44 H 0.12 1.52 8.06 -52.49 -0.42 1.09 16 45 H 0.13 2.41 7.83 -52.49 -0.41 2.00 16 46 H 0.28 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 370.60 15.07 5.58 5.58 Total: -1.00 -33.65 370.60 -8.30 -41.95 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -6.23 Total: 1.44 kcal Atomic # 6 Polarization: 16.50 SS G_CDS: -2.48 Total: 14.02 kcal Atomic # 7 Polarization: -57.14 SS G_CDS: -1.06 Total: -58.20 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: 0.14 Total: -23.05 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -4.25 Total: 18.26 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.65 -8.30 -41.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012874073.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.639 kcal (2) G-P(sol) polarization free energy of solvation -33.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds