Wall clock time and date at job start Tue Mar 31 2020 05:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08995 * 109.47085 * 2 1 4 4 C 1.53004 * 109.47046 * 239.99917 * 2 1 3 5 5 C 1.53003 * 109.47076 * 300.00142 * 4 2 1 6 6 C 1.52995 * 109.47129 * 300.00078 * 5 4 2 7 7 C 1.53004 * 109.47412 * 60.00332 * 6 5 4 8 8 H 1.09001 * 109.47264 * 59.99715 * 7 6 5 9 9 N 1.46496 * 109.47350 * 180.02562 * 7 6 5 10 10 C 1.34779 * 120.00056 * 274.99834 * 9 7 6 11 11 O 1.21580 * 119.99681 * 359.97438 * 10 9 7 12 12 C 1.47590 * 120.00037 * 180.02562 * 10 9 7 13 13 C 1.39783 * 120.06031 * 179.97438 * 12 10 9 14 14 C 1.37630 * 119.93654 * 180.02562 * 13 12 10 15 15 C 1.39260 * 120.06139 * 0.27455 * 14 13 12 16 16 N 1.39107 * 119.93497 * 179.69870 * 15 14 13 17 17 C 1.34770 * 120.00033 * 33.64420 * 16 15 14 18 18 O 1.21729 * 120.00058 * 5.27453 * 17 16 15 19 19 C 1.46195 * 120.00396 * 185.27520 * 17 16 15 20 20 H 1.08000 * 119.99603 * 0.02562 * 19 17 16 21 21 C 1.40122 * 120.00303 * 179.97438 * 19 17 16 22 22 N 1.30636 * 120.00383 * 359.97438 * 21 19 17 23 23 Si 1.86799 * 120.00004 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.46983 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47399 * 119.99849 * 23 21 19 26 26 H 1.48498 * 109.47098 * 239.99820 * 23 21 19 27 27 C 1.39252 * 120.12621 * 359.45226 * 15 14 13 28 28 C 1.37633 * 120.05995 * 0.54635 * 27 15 14 29 29 C 1.53000 * 109.46746 * 120.00188 * 2 1 3 30 30 H 1.09001 * 109.46907 * 179.97438 * 29 2 1 31 31 C 1.52995 * 109.47251 * 299.99581 * 29 2 1 32 32 H 1.08994 * 109.47017 * 300.00086 * 1 2 3 33 33 H 1.08996 * 109.46632 * 59.99701 * 1 2 3 34 34 H 1.08995 * 109.47085 * 180.02562 * 1 2 3 35 35 H 1.08991 * 109.47203 * 60.00200 * 4 2 1 36 36 H 1.09001 * 109.47097 * 180.02562 * 4 2 1 37 37 H 1.09001 * 109.47087 * 60.00081 * 5 4 2 38 38 H 1.08994 * 109.47093 * 179.97438 * 5 4 2 39 39 H 1.09001 * 109.47139 * 299.99971 * 6 5 4 40 40 H 1.09005 * 109.47282 * 180.02562 * 6 5 4 41 41 H 0.97006 * 120.00438 * 94.99379 * 9 7 6 42 42 H 1.07993 * 120.03466 * 0.04666 * 13 12 10 43 43 H 1.07997 * 119.97112 * 180.02562 * 14 13 12 44 44 H 0.96997 * 120.00135 * 213.63505 * 16 15 14 45 45 H 0.96993 * 120.00475 * 180.02562 * 22 21 19 46 46 H 1.08003 * 119.97163 * 180.27751 * 27 15 14 47 47 H 1.07999 * 120.03260 * 179.74840 * 28 27 15 48 48 H 1.09005 * 109.47289 * 180.02562 * 31 29 2 49 49 H 1.08997 * 109.47461 * 300.00100 * 31 29 2 50 50 H 1.09001 * 109.46955 * 60.00286 * 31 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2493 5 6 1.5300 -2.1638 -1.2493 6 6 2.0399 -2.8850 0.0000 7 6 1.5299 -2.1638 1.2493 8 1 0.4399 -2.1638 1.2492 9 7 2.0187 -2.8541 2.4454 10 6 1.3424 -3.9111 2.9372 11 8 0.3264 -4.2914 2.3884 12 6 1.8345 -4.6061 4.1426 13 6 1.1338 -5.7021 4.6540 14 6 1.5947 -6.3481 5.7786 15 6 2.7549 -5.9071 6.4101 16 7 3.2150 -6.5580 7.5501 17 6 3.0408 -7.8877 7.6834 18 8 2.5681 -8.5346 6.7669 19 6 3.4193 -8.5534 8.9287 20 1 3.8382 -7.9795 9.7421 21 6 3.2377 -9.9359 9.0675 22 7 2.7296 -10.6299 8.0843 23 14 3.7208 -10.7863 10.6590 24 1 4.2679 -9.7847 11.6091 25 1 2.5257 -11.4346 11.2564 26 1 4.7531 -11.8156 10.3766 27 6 3.4582 -4.8190 5.8995 28 6 3.0019 -4.1693 4.7753 29 6 2.0400 -0.7213 1.2492 30 1 3.1300 -0.7217 1.2490 31 6 1.5300 -0.0001 2.4985 32 1 -0.3633 0.5138 0.8899 33 1 -0.3632 0.5139 -0.8899 34 1 -0.3633 -1.0276 0.0005 35 1 1.6768 -0.2075 -2.1392 36 1 3.1301 -0.7217 -1.2490 37 1 0.4400 -2.1638 -1.2493 38 1 1.8929 -2.6775 -2.1394 39 1 3.1300 -2.8851 0.0000 40 1 1.6770 -3.9129 -0.0002 41 1 2.8292 -2.5504 2.8835 42 1 0.2317 -6.0420 4.1671 43 1 1.0540 -7.1952 6.1739 44 1 3.6613 -6.0549 8.2491 45 1 2.6035 -11.5868 8.1805 46 1 4.3601 -4.4819 6.3887 47 1 3.5454 -3.3229 4.3821 48 1 1.8937 -0.5137 3.3885 49 1 1.8934 1.0276 2.4985 50 1 0.4400 0.0000 2.4984 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012975437.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:33 Heat of formation + Delta-G solvation = -75.304588 kcal Electronic energy + Delta-G solvation = -29664.762851 eV Core-core repulsion = 25655.388008 eV Total energy + Delta-G solvation = -4009.374843 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 2.23 seconds Orbital eigenvalues (eV) -40.58647 -39.45333 -38.45012 -36.73311 -34.52973 -33.58680 -33.06352 -32.55556 -30.97552 -30.28851 -29.11626 -27.60383 -26.47376 -25.89004 -23.51797 -22.56276 -21.91232 -21.47946 -20.63649 -19.75306 -18.95406 -17.73873 -17.44384 -16.55975 -16.27334 -15.57049 -15.43160 -15.16518 -14.82870 -14.46345 -14.44712 -14.23836 -14.01290 -13.74703 -13.57344 -13.39973 -13.14368 -12.78823 -12.75115 -12.70078 -12.55484 -12.26842 -11.98527 -11.87823 -11.79015 -11.63698 -11.44275 -11.33600 -11.17022 -11.00289 -10.78678 -10.71917 -10.66306 -10.57164 -10.37040 -10.22429 -9.65624 -9.44197 -9.02468 -8.95543 -8.58299 -7.86389 -7.23779 -6.42997 -4.90980 1.34609 1.88171 3.01027 3.10087 3.14443 3.20609 3.23255 3.92255 4.20693 4.26981 4.38985 4.45508 4.48467 4.50788 4.76180 4.88128 5.02636 5.04203 5.06740 5.12780 5.15642 5.17864 5.30002 5.32736 5.40555 5.51724 5.52368 5.54262 5.62391 5.68553 5.75043 5.78506 5.82369 5.89434 5.91018 5.96530 5.97973 6.06711 6.10519 6.14514 6.27250 6.42588 6.53527 6.59867 6.88735 6.94711 7.19880 7.25913 7.60957 7.62747 7.92085 8.05357 8.41673 8.76717 9.07753 10.27529 10.47459 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.032371 B = 0.001873 C = 0.001831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.766208 B =14948.034150 C =15288.868447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.081 4.081 3 H 0.072 0.928 4 C -0.116 4.116 5 C -0.119 4.119 6 C -0.131 4.131 7 C 0.151 3.849 8 H 0.091 0.909 9 N -0.729 5.729 10 C 0.569 3.431 11 O -0.548 6.548 12 C -0.195 4.195 13 C -0.034 4.034 14 C -0.142 4.142 15 C 0.226 3.774 16 N -0.696 5.696 17 C 0.539 3.461 18 O -0.555 6.555 19 C -0.536 4.536 20 H 0.074 0.926 21 C 0.085 3.915 22 N -0.756 5.756 23 Si 0.914 3.086 24 H -0.262 1.262 25 H -0.274 1.274 26 H -0.274 1.274 27 C -0.189 4.189 28 C -0.061 4.061 29 C -0.093 4.093 30 H 0.074 0.926 31 C -0.150 4.150 32 H 0.058 0.942 33 H 0.053 0.947 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.069 0.931 41 H 0.397 0.603 42 H 0.129 0.871 43 H 0.144 0.856 44 H 0.396 0.604 45 H 0.273 0.727 46 H 0.123 0.877 47 H 0.116 0.884 48 H 0.057 0.943 49 H 0.055 0.945 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.737 21.583 -12.491 24.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.100 4.100 3 H 0.091 0.909 4 C -0.154 4.154 5 C -0.157 4.157 6 C -0.170 4.170 7 C 0.046 3.954 8 H 0.109 0.891 9 N -0.381 5.381 10 C 0.359 3.641 11 O -0.426 6.426 12 C -0.200 4.200 13 C -0.054 4.054 14 C -0.163 4.163 15 C 0.124 3.876 16 N -0.338 5.338 17 C 0.346 3.654 18 O -0.437 6.437 19 C -0.572 4.572 20 H 0.092 0.908 21 C -0.137 4.137 22 N -0.384 5.384 23 Si 0.738 3.262 24 H -0.186 1.186 25 H -0.199 1.199 26 H -0.200 1.200 27 C -0.210 4.210 28 C -0.081 4.081 29 C -0.112 4.112 30 H 0.092 0.908 31 C -0.208 4.208 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.088 0.912 41 H 0.232 0.768 42 H 0.147 0.853 43 H 0.162 0.838 44 H 0.229 0.771 45 H 0.084 0.916 46 H 0.141 0.859 47 H 0.133 0.867 48 H 0.076 0.924 49 H 0.074 0.926 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.385 20.550 -13.511 24.597 hybrid contribution 1.077 -0.075 1.332 1.714 sum 0.692 20.475 -12.179 23.834 Atomic orbital electron populations 1.22036 0.95152 1.02530 1.01679 1.21074 0.96176 0.98950 0.93839 0.90947 1.21606 1.00571 0.95778 0.97410 1.21534 1.01305 0.95283 0.97532 1.21942 1.00847 1.00136 0.94047 1.21001 1.00178 0.90155 0.84061 0.89109 1.45976 1.29478 1.32671 1.29934 1.18323 0.82940 0.79239 0.83558 1.90728 1.25089 1.65627 1.61176 1.19553 0.99897 1.01502 0.99037 1.21058 0.98239 0.92133 0.93987 1.21336 0.95768 1.01755 0.97424 1.18211 0.90592 0.90580 0.88198 1.44255 1.60612 1.10477 1.18449 1.18462 0.79517 0.78122 0.89330 1.90660 1.48047 1.62979 1.41971 1.20901 1.44369 0.93092 0.98826 0.90812 1.25765 0.92980 0.97401 0.97507 1.69981 1.30265 1.07654 1.30510 0.86202 0.78859 0.79535 0.81588 1.18599 1.19912 1.19951 1.20785 1.01054 1.00341 0.98867 1.20801 0.94572 0.98045 0.94660 1.21401 1.00480 0.93872 0.95488 0.90797 1.21895 1.01824 0.99899 0.97137 0.92339 0.92783 0.91807 0.91906 0.91957 0.91442 0.91884 0.91920 0.91220 0.76809 0.85343 0.83800 0.77066 0.91615 0.85944 0.86652 0.92368 0.92604 0.92141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.10 8.15 37.16 0.30 -0.79 16 2 C -0.08 -0.54 2.72 -90.61 -0.25 -0.78 16 3 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 4 C -0.12 -0.76 5.45 -26.73 -0.15 -0.91 16 5 C -0.12 -0.95 5.65 -26.73 -0.15 -1.10 16 6 C -0.13 -1.30 5.49 -26.73 -0.15 -1.44 16 7 C 0.15 1.51 1.63 -67.93 -0.11 1.40 16 8 H 0.09 1.09 5.86 -51.93 -0.30 0.79 16 9 N -0.73 -8.24 4.33 -54.83 -0.24 -8.47 16 10 C 0.57 8.82 7.73 -12.44 -0.10 8.72 16 11 O -0.55 -10.25 16.00 5.30 0.08 -10.16 16 12 C -0.20 -3.19 5.88 -104.93 -0.62 -3.81 16 13 C -0.03 -0.64 9.58 -39.23 -0.38 -1.02 16 14 C -0.14 -2.98 8.62 -39.42 -0.34 -3.32 16 15 C 0.23 4.49 6.27 -83.80 -0.53 3.96 16 16 N -0.70 -14.86 5.30 -11.19 -0.06 -14.92 16 17 C 0.54 14.43 7.46 -13.07 -0.10 14.33 16 18 O -0.56 -16.90 12.69 5.16 0.07 -16.84 16 19 C -0.54 -14.17 9.54 -35.68 -0.34 -14.51 16 20 H 0.07 1.76 7.85 -52.49 -0.41 1.35 16 21 C 0.09 2.24 5.50 -17.35 -0.10 2.15 16 22 N -0.76 -21.54 11.82 55.55 0.66 -20.88 16 23 Si 0.91 19.03 29.56 -169.99 -5.02 14.01 16 24 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 25 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 26 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 27 C -0.19 -3.00 9.94 -39.43 -0.39 -3.39 16 28 C -0.06 -0.87 9.53 -39.23 -0.37 -1.24 16 29 C -0.09 -0.69 2.07 -90.62 -0.19 -0.88 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 31 C -0.15 -1.11 8.68 37.16 0.32 -0.78 16 32 H 0.06 0.40 6.43 -51.93 -0.33 0.07 16 33 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.06 0.52 4.81 -51.93 -0.25 0.27 16 35 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.07 0.56 6.43 -51.93 -0.33 0.23 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.40 3.58 6.40 -40.82 -0.26 3.32 16 42 H 0.13 2.37 7.64 -52.49 -0.40 1.97 16 43 H 0.14 3.45 6.41 -52.49 -0.34 3.11 16 44 H 0.40 7.07 8.79 -40.82 -0.36 6.71 16 45 H 0.27 7.02 8.29 -40.82 -0.34 6.68 16 46 H 0.12 1.62 8.06 -52.48 -0.42 1.20 16 47 H 0.12 1.17 6.39 -52.49 -0.34 0.83 16 48 H 0.06 0.45 7.44 -51.93 -0.39 0.07 16 49 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 50 H 0.06 0.49 6.43 -51.93 -0.33 0.15 16 LS Contribution 391.44 15.07 5.90 5.90 Total: -1.00 -33.18 391.44 -9.64 -42.82 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: -7.41 Total: 11.96 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: -3.62 Total: -3.42 kcal Atomic # 7 Polarization: -44.63 SS G_CDS: 0.36 Total: -44.27 kcal Atomic # 8 Polarization: -27.15 SS G_CDS: 0.15 Total: -27.00 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.02 Total: 14.01 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.18 -9.64 -42.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012975437.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.484 kcal (2) G-P(sol) polarization free energy of solvation -33.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.23 seconds