Wall clock time and date at job start Tue Mar 31 2020 05:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.46669 * 2 1 4 4 C 1.52996 * 109.46925 * 240.00209 * 2 1 3 5 5 C 1.53007 * 109.47105 * 179.97438 * 4 2 1 6 6 C 1.52998 * 109.47104 * 59.99638 * 5 4 2 7 7 C 1.53008 * 109.47146 * 300.00115 * 6 5 4 8 8 H 1.08997 * 109.46958 * 299.99978 * 7 6 5 9 9 N 1.46499 * 109.46808 * 180.02562 * 7 6 5 10 10 C 1.34775 * 119.99649 * 85.00486 * 9 7 6 11 11 O 1.21582 * 120.00300 * 359.97438 * 10 9 7 12 12 C 1.47603 * 119.99787 * 179.97438 * 10 9 7 13 13 C 1.39779 * 120.06201 * 359.72804 * 12 10 9 14 14 C 1.37633 * 119.93906 * 179.67179 * 13 12 10 15 15 C 1.39255 * 120.05558 * 0.61981 * 14 13 12 16 16 N 1.39102 * 119.93313 * 179.69507 * 15 14 13 17 17 C 1.34780 * 119.99991 * 213.61101 * 16 15 14 18 18 O 1.21724 * 120.00017 * 5.28563 * 17 16 15 19 19 C 1.46192 * 119.99928 * 185.28137 * 17 16 15 20 20 H 1.08008 * 120.00133 * 0.02562 * 19 17 16 21 21 C 1.40126 * 120.00280 * 180.02562 * 19 17 16 22 22 N 1.30643 * 119.99388 * 0.02562 * 21 19 17 23 23 Si 1.86797 * 120.00384 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47153 * 59.99970 * 23 21 19 25 25 H 1.48496 * 109.47166 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47094 * 299.99923 * 23 21 19 27 27 C 1.39254 * 120.12813 * 359.67754 * 15 14 13 28 28 C 1.37631 * 120.06420 * 359.97438 * 27 15 14 29 29 C 1.52998 * 109.47224 * 119.99885 * 2 1 3 30 30 H 1.09001 * 109.46857 * 300.00233 * 29 2 1 31 31 C 1.53002 * 109.47195 * 59.99921 * 29 2 1 32 32 H 1.09001 * 109.47393 * 300.00212 * 1 2 3 33 33 H 1.09006 * 109.47568 * 60.00212 * 1 2 3 34 34 H 1.09007 * 109.47129 * 180.02562 * 1 2 3 35 35 H 1.09006 * 109.47276 * 299.99419 * 4 2 1 36 36 H 1.08997 * 109.47646 * 59.99940 * 4 2 1 37 37 H 1.09006 * 109.46609 * 299.99864 * 5 4 2 38 38 H 1.08994 * 109.47225 * 179.97438 * 5 4 2 39 39 H 1.08996 * 109.47056 * 180.02562 * 6 5 4 40 40 H 1.08997 * 109.47175 * 59.99960 * 6 5 4 41 41 H 0.96996 * 119.99811 * 264.99676 * 9 7 6 42 42 H 1.08009 * 120.02887 * 359.97197 * 13 12 10 43 43 H 1.08002 * 119.97110 * 180.31859 * 14 13 12 44 44 H 0.96999 * 120.00278 * 33.61665 * 16 15 14 45 45 H 0.96998 * 119.99575 * 180.02562 * 22 21 19 46 46 H 1.08006 * 119.96743 * 180.02562 * 27 15 14 47 47 H 1.07997 * 120.03026 * 179.97438 * 28 27 15 48 48 H 1.09002 * 109.46405 * 59.99859 * 31 29 2 49 49 H 1.08996 * 109.47125 * 179.97438 * 31 29 2 50 50 H 1.08994 * 109.47127 * 300.00250 * 31 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5700 -0.7207 -1.2496 6 6 4.0805 -1.4415 -0.0004 7 6 3.5705 -0.7202 1.2489 8 1 3.9335 0.3076 1.2486 9 7 4.0599 -1.4101 2.4450 10 6 5.2819 -1.1231 2.9359 11 8 5.9782 -0.2921 2.3857 12 6 5.7748 -1.8178 4.1413 13 6 4.9730 -2.7694 4.7781 14 6 5.4378 -3.4206 5.8981 15 6 6.7004 -3.1227 6.4043 16 7 7.1651 -3.7778 7.5400 17 6 7.9625 -3.1303 8.4127 18 8 8.1980 -1.9460 8.2587 19 6 8.5444 -3.8502 9.5442 20 1 8.3357 -4.9012 9.6806 21 6 9.3729 -3.1770 10.4518 22 7 9.6250 -1.9057 10.2870 23 14 10.1171 -4.0970 11.8971 24 1 10.9645 -5.2077 11.3935 25 1 10.9487 -3.1660 12.7014 26 1 9.0302 -4.6490 12.7451 27 6 7.4989 -2.1707 5.7756 28 6 7.0420 -1.5216 4.6512 29 6 2.0400 -0.7212 1.2492 30 1 1.6766 -0.2073 2.1392 31 6 1.5300 -2.1637 1.2493 32 1 -0.3634 0.5139 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 -0.3634 -1.0277 0.0005 35 1 1.6766 -1.7489 -1.2493 36 1 1.6766 -0.2074 -2.1392 37 1 3.9329 0.3072 -1.2498 38 1 3.9333 -1.2348 -2.1393 39 1 5.1705 -1.4407 -0.0004 40 1 3.7176 -2.4693 -0.0001 41 1 3.5045 -2.0733 2.8837 42 1 3.9916 -2.9970 4.3888 43 1 4.8208 -4.1596 6.3875 44 1 6.9154 -4.7007 7.7040 45 1 10.1988 -1.4397 10.9150 46 1 8.4779 -1.9420 6.1702 47 1 7.6615 -0.7831 4.1643 48 1 1.8934 -2.6775 0.3593 49 1 1.8937 -2.6776 2.1390 50 1 0.4401 -2.1637 1.2493 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012975440.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:39 Heat of formation + Delta-G solvation = -74.681714 kcal Electronic energy + Delta-G solvation = -29532.113133 eV Core-core repulsion = 25522.765300 eV Total energy + Delta-G solvation = -4009.347833 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.59653 -39.46259 -38.46836 -36.73816 -34.59333 -33.59924 -32.88401 -32.55042 -31.09289 -30.32972 -29.21385 -27.52260 -26.42862 -26.01329 -23.51217 -22.54321 -22.12973 -21.44597 -20.48229 -19.67685 -18.88575 -17.83084 -17.55005 -16.34385 -16.25234 -15.70236 -15.52923 -15.15317 -14.93450 -14.67927 -14.41511 -14.30501 -13.94929 -13.78914 -13.56297 -13.25675 -13.09701 -12.90211 -12.75399 -12.68246 -12.57375 -12.29472 -12.01877 -11.88104 -11.84922 -11.65777 -11.42685 -11.34774 -11.12709 -11.01753 -10.78234 -10.72788 -10.65569 -10.43057 -10.42136 -10.39200 -9.66268 -9.44243 -9.03069 -8.95105 -8.58435 -7.86738 -7.23509 -6.42466 -4.90853 1.34654 1.88103 3.03842 3.09896 3.11852 3.21457 3.21688 3.92452 4.20351 4.29505 4.36019 4.45351 4.46245 4.50804 4.77711 4.83690 4.95280 4.99499 5.01001 5.12058 5.16216 5.22942 5.30152 5.34083 5.35522 5.40910 5.49776 5.54519 5.57889 5.63752 5.69184 5.77777 5.79551 5.82258 5.90485 5.97856 5.98588 6.04108 6.09283 6.14399 6.25800 6.42431 6.52697 6.59843 6.88748 6.94646 7.19800 7.25897 7.60874 7.62594 7.91971 8.04929 8.41429 8.76635 9.07858 10.27767 10.47779 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.032334 B = 0.001830 C = 0.001791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.746205 B =15294.268336 C =15628.156099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.084 4.084 3 H 0.072 0.928 4 C -0.117 4.117 5 C -0.117 4.117 6 C -0.131 4.131 7 C 0.152 3.848 8 H 0.086 0.914 9 N -0.730 5.730 10 C 0.569 3.431 11 O -0.547 6.547 12 C -0.196 4.196 13 C -0.061 4.061 14 C -0.189 4.189 15 C 0.226 3.774 16 N -0.696 5.696 17 C 0.539 3.461 18 O -0.555 6.555 19 C -0.537 4.537 20 H 0.073 0.927 21 C 0.085 3.915 22 N -0.756 5.756 23 Si 0.915 3.085 24 H -0.266 1.266 25 H -0.278 1.278 26 H -0.266 1.266 27 C -0.142 4.142 28 C -0.034 4.034 29 C -0.094 4.094 30 H 0.076 0.924 31 C -0.155 4.155 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.058 0.942 35 H 0.066 0.934 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.397 0.603 42 H 0.115 0.885 43 H 0.123 0.877 44 H 0.396 0.604 45 H 0.274 0.726 46 H 0.144 0.856 47 H 0.129 0.871 48 H 0.065 0.935 49 H 0.052 0.948 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.961 -2.119 -18.919 25.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.103 4.103 3 H 0.090 0.910 4 C -0.154 4.154 5 C -0.155 4.155 6 C -0.170 4.170 7 C 0.047 3.953 8 H 0.104 0.896 9 N -0.383 5.383 10 C 0.359 3.641 11 O -0.426 6.426 12 C -0.200 4.200 13 C -0.081 4.081 14 C -0.211 4.211 15 C 0.125 3.875 16 N -0.338 5.338 17 C 0.346 3.654 18 O -0.437 6.437 19 C -0.572 4.572 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.384 5.384 23 Si 0.739 3.261 24 H -0.191 1.191 25 H -0.203 1.203 26 H -0.191 1.191 27 C -0.163 4.163 28 C -0.054 4.054 29 C -0.113 4.113 30 H 0.094 0.906 31 C -0.212 4.212 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.233 0.767 42 H 0.133 0.867 43 H 0.141 0.859 44 H 0.229 0.771 45 H 0.085 0.915 46 H 0.162 0.838 47 H 0.147 0.853 48 H 0.084 0.916 49 H 0.071 0.929 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -16.109 -0.513 -19.224 25.087 hybrid contribution -0.115 -1.262 1.146 1.709 sum -16.224 -1.775 -18.079 24.356 Atomic orbital electron populations 1.21881 0.95017 1.02003 1.01672 1.21088 0.95569 0.99512 0.94134 0.90968 1.21667 0.95604 1.00900 0.97264 1.21487 0.95384 1.01064 0.97538 1.21962 1.01407 0.99646 0.93967 1.20910 0.92782 0.97362 0.84201 0.89553 1.46040 1.18145 1.44184 1.29890 1.18349 0.80738 0.81511 0.83542 1.90730 1.56482 1.34255 1.61123 1.19552 0.97760 1.03637 0.99075 1.20796 0.97815 0.94665 0.94787 1.20777 0.94967 1.05272 1.00051 1.18207 0.90905 0.92249 0.86180 1.44257 1.52496 1.15586 1.21437 1.18443 0.77957 0.86935 0.82065 1.90659 1.61890 1.15619 1.75485 1.20832 1.30296 0.96865 1.09256 0.90905 1.25763 0.94934 0.94646 0.98295 1.69969 1.26896 1.08793 1.32753 0.86307 0.79406 0.79814 0.80597 1.19065 1.20328 1.19097 1.21338 1.01692 0.98689 0.94605 1.21057 0.93787 0.96588 0.93935 1.21395 0.93981 0.97139 0.98754 0.90574 1.22021 1.01312 0.95854 1.02035 0.92659 0.92718 0.92290 0.91571 0.92033 0.91786 0.91826 0.91348 0.91562 0.76669 0.86712 0.85931 0.77073 0.91507 0.83785 0.85324 0.91648 0.92912 0.92020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 8.84 37.16 0.33 -0.51 16 2 C -0.08 -0.56 2.49 -90.62 -0.23 -0.79 16 3 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 4 C -0.12 -0.74 4.93 -26.73 -0.13 -0.88 16 5 C -0.12 -0.90 5.92 -26.73 -0.16 -1.06 16 6 C -0.13 -1.24 5.22 -26.73 -0.14 -1.38 16 7 C 0.15 1.54 2.15 -67.90 -0.15 1.39 16 8 H 0.09 1.06 7.57 -51.93 -0.39 0.67 16 9 N -0.73 -8.40 4.95 -54.80 -0.27 -8.67 16 10 C 0.57 8.92 7.73 -12.44 -0.10 8.83 16 11 O -0.55 -10.34 16.00 5.29 0.08 -10.25 16 12 C -0.20 -3.23 5.88 -104.93 -0.62 -3.84 16 13 C -0.06 -0.87 9.53 -39.23 -0.37 -1.25 16 14 C -0.19 -3.01 9.94 -39.42 -0.39 -3.40 16 15 C 0.23 4.51 6.27 -83.81 -0.53 3.98 16 16 N -0.70 -14.87 5.30 -11.19 -0.06 -14.93 16 17 C 0.54 14.44 7.46 -13.07 -0.10 14.35 16 18 O -0.56 -16.91 12.69 5.17 0.07 -16.84 16 19 C -0.54 -14.19 9.54 -35.68 -0.34 -14.53 16 20 H 0.07 1.73 7.85 -52.48 -0.41 1.32 16 21 C 0.09 2.25 5.50 -17.35 -0.10 2.15 16 22 N -0.76 -21.54 11.83 55.55 0.66 -20.88 16 23 Si 0.91 19.04 29.56 -169.99 -5.02 14.01 16 24 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 25 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 26 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 27 C -0.14 -3.00 8.62 -39.43 -0.34 -3.34 16 28 C -0.03 -0.64 9.58 -39.23 -0.38 -1.01 16 29 C -0.09 -0.71 2.41 -90.59 -0.22 -0.92 16 30 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 31 C -0.16 -0.98 7.98 37.16 0.30 -0.69 16 32 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.06 0.31 6.43 -51.92 -0.33 -0.02 16 35 H 0.07 0.40 6.43 -51.93 -0.33 0.07 16 36 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.07 0.57 6.43 -51.93 -0.33 0.24 16 41 H 0.40 3.69 4.89 -40.82 -0.20 3.49 16 42 H 0.12 1.18 6.39 -52.48 -0.34 0.85 16 43 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 44 H 0.40 7.07 8.79 -40.82 -0.36 6.71 16 45 H 0.27 7.09 8.29 -40.82 -0.34 6.75 16 46 H 0.14 3.46 6.41 -52.48 -0.34 3.12 16 47 H 0.13 2.38 7.64 -52.49 -0.40 1.98 16 48 H 0.06 0.41 4.81 -51.93 -0.25 0.16 16 49 H 0.05 0.32 6.51 -51.93 -0.34 -0.01 16 50 H 0.06 0.34 6.43 -51.93 -0.33 0.01 16 LS Contribution 389.71 15.07 5.87 5.87 Total: -1.00 -33.18 389.71 -9.62 -42.80 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: -7.30 Total: 11.77 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: -3.65 Total: -2.88 kcal Atomic # 7 Polarization: -44.81 SS G_CDS: 0.33 Total: -44.48 kcal Atomic # 8 Polarization: -27.24 SS G_CDS: 0.15 Total: -27.09 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.02 Total: 14.01 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.18 -9.62 -42.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012975440.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.877 kcal (2) G-P(sol) polarization free energy of solvation -33.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds