Wall clock time and date at job start Tue Mar 31 2020 07:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86801 * 120.00237 * 2 1 4 4 H 1.48499 * 109.46792 * 240.00058 * 3 2 1 5 5 H 1.48494 * 109.46916 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46914 * 120.00020 * 3 2 1 7 7 C 1.38815 * 119.99925 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00534 * 163.18143 * 7 2 1 9 9 N 1.36948 * 119.99596 * 343.17939 * 7 2 1 10 10 C 1.46934 * 120.65942 * 331.63049 * 9 7 2 11 11 C 1.53168 * 108.70362 * 233.77989 * 10 9 7 12 12 C 1.53094 * 109.37270 * 305.23677 * 11 10 9 13 13 O 1.42906 * 109.49797 * 301.15560 * 12 11 10 14 14 C 1.53029 * 109.20324 * 181.27615 * 12 11 10 15 15 C 1.52967 * 109.57251 * 180.20163 * 14 12 11 16 16 C 1.53017 * 109.38533 * 60.10583 * 15 14 12 17 17 C 1.52963 * 109.39714 * 299.82739 * 16 15 14 18 18 C 1.53031 * 109.57445 * 60.09291 * 17 16 15 19 19 H 1.08999 * 109.76877 * 60.48961 * 18 17 16 20 20 C 1.46889 * 120.65652 * 151.65663 * 9 7 2 21 21 H 1.09009 * 109.57048 * 6.36676 * 20 9 7 22 22 C 1.50697 * 109.57406 * 246.11833 * 20 9 7 23 23 C 1.38255 * 119.92641 * 356.83632 * 22 20 9 24 24 C 1.38238 * 120.14455 * 180.31449 * 23 22 20 25 25 C 1.38550 * 120.02458 * 359.68715 * 24 23 22 26 26 C 1.39267 * 119.82984 * 359.97438 * 25 24 23 27 27 C 1.38236 * 119.92991 * 176.52344 * 22 20 9 28 28 O 1.36508 * 108.63756 * 180.02562 * 26 25 24 29 29 C 1.43981 * 105.48288 * 342.72145 * 28 26 25 30 30 O 1.36503 * 131.52764 * 180.02562 * 25 24 23 31 31 H 0.96999 * 119.99953 * 359.97438 * 1 2 3 32 32 H 1.08996 * 109.59818 * 353.54962 * 10 9 7 33 33 H 1.09004 * 109.59377 * 113.86148 * 10 9 7 34 34 H 1.09003 * 109.48628 * 65.20684 * 11 10 9 35 35 H 1.08997 * 109.48654 * 185.24740 * 11 10 9 36 36 H 0.96696 * 113.99844 * 299.99923 * 13 12 11 37 37 H 1.08997 * 109.45690 * 300.23290 * 14 12 11 38 38 H 1.09005 * 109.45312 * 60.19174 * 14 12 11 39 39 H 1.08999 * 109.48573 * 180.08334 * 15 14 12 40 40 H 1.09007 * 109.48569 * 300.11818 * 15 14 12 41 41 H 1.08996 * 109.48519 * 59.80325 * 16 15 14 42 42 H 1.09005 * 109.48388 * 179.83386 * 16 15 14 43 43 H 1.09000 * 109.45422 * 180.13012 * 17 16 15 44 44 H 1.09006 * 109.45283 * 300.08534 * 17 16 15 45 45 H 1.08001 * 119.93041 * 359.97438 * 23 22 20 46 46 H 1.07993 * 119.98944 * 179.66466 * 24 23 22 47 47 H 1.07995 * 119.98713 * 359.97438 * 27 22 20 48 48 H 1.08997 * 110.57583 * 268.55097 * 29 28 26 49 49 H 1.09003 * 110.69567 * 145.74800 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0556 -1.2222 -0.2712 9 7 1.3693 -2.3629 0.3422 10 6 0.2267 -2.3433 1.2657 11 6 0.5029 -3.3237 2.4097 12 6 0.8161 -4.7055 1.8298 13 8 -0.2894 -5.1546 1.0435 14 6 1.0601 -5.6891 2.9765 15 6 1.3790 -7.0722 2.4062 16 6 2.6345 -6.9856 1.5358 17 6 2.3895 -6.0061 0.3868 18 6 2.0678 -4.6213 0.9533 19 1 2.9070 -4.2628 1.5493 20 6 1.8109 -3.6522 -0.2058 21 1 2.7289 -3.5112 -0.7766 22 6 0.7389 -4.2127 -1.1044 23 6 -0.4632 -3.5442 -1.2439 24 6 -1.4523 -4.0576 -2.0620 25 6 -1.2381 -5.2413 -2.7495 26 6 -0.0246 -5.9111 -2.6144 27 6 0.9619 -5.3908 -1.7924 28 8 -0.0600 -7.0377 -3.3843 29 6 -1.4528 -7.2640 -3.6705 30 8 -2.0338 -5.9481 -3.6043 31 1 -0.4850 0.8400 0.0004 32 1 0.0990 -1.3385 1.6681 33 1 -0.6773 -2.6424 0.7351 34 1 1.3546 -2.9722 2.9921 35 1 -0.3749 -3.3892 3.0524 36 1 -1.1170 -5.2335 1.5374 37 1 1.8995 -5.3427 3.5795 38 1 0.1671 -5.7502 3.5985 39 1 1.5510 -7.7719 3.2241 40 1 0.5404 -7.4184 1.8018 41 1 3.4719 -6.6357 2.1394 42 1 2.8649 -7.9711 1.1309 43 1 3.2825 -5.9454 -0.2352 44 1 1.5507 -6.3554 -0.2155 45 1 -0.6321 -2.6216 -0.7084 46 1 -2.3923 -3.5361 -2.1649 47 1 1.9039 -5.9081 -1.6857 48 1 -1.8970 -7.9172 -2.9196 49 1 -1.5774 -7.6878 -4.6670 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000013142489.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:23 Heat of formation + Delta-G solvation = -40.273537 kcal Electronic energy + Delta-G solvation = -33634.220103 eV Core-core repulsion = 29528.645659 eV Total energy + Delta-G solvation = -4105.574444 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.63787 -40.22322 -37.22680 -35.80132 -35.52631 -34.75127 -32.49694 -31.66690 -29.98968 -29.28310 -29.05450 -28.21797 -25.75709 -24.79897 -23.26004 -22.60505 -22.03355 -21.81851 -20.98586 -19.45761 -19.02884 -17.36623 -16.97023 -16.91804 -16.54347 -15.80530 -15.53335 -15.05627 -14.86185 -14.52845 -14.37369 -13.96494 -13.72485 -13.55410 -13.36070 -13.23469 -13.08568 -12.65739 -12.51411 -12.35148 -12.32671 -12.21481 -11.65533 -11.54306 -11.25216 -11.20572 -11.04329 -10.98828 -10.77708 -10.68090 -10.45912 -10.39112 -10.22384 -10.14085 -9.97175 -9.76011 -9.52322 -9.29657 -8.92228 -8.48333 -7.97370 -7.20160 -6.74947 -5.86020 -3.28451 1.95771 2.01176 3.26661 3.36718 3.42566 3.43761 3.88477 4.41517 4.43727 4.72112 4.92444 4.98502 5.02692 5.11174 5.15406 5.16729 5.26711 5.32882 5.47632 5.56238 5.64699 5.71487 5.74167 5.80930 5.84267 5.88095 5.90921 6.03296 6.11616 6.15610 6.22148 6.27700 6.34897 6.38200 6.42162 6.48043 6.49666 6.52607 6.70914 6.73709 6.82101 6.85581 6.88031 7.07793 7.28822 7.37430 7.55691 7.63850 7.76568 7.86110 8.22416 8.39609 9.15615 9.76998 10.34253 11.22535 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009949 B = 0.005535 C = 0.004111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2813.637994 B = 5057.125128 C = 6809.225051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.009 3.991 3 Si 0.902 3.098 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.255 4.255 8 H 0.066 0.934 9 N -0.579 5.579 10 C 0.160 3.840 11 C -0.167 4.167 12 C 0.148 3.852 13 O -0.537 6.537 14 C -0.144 4.144 15 C -0.111 4.111 16 C -0.116 4.116 17 C -0.135 4.135 18 C -0.070 4.070 19 H 0.078 0.922 20 C 0.213 3.787 21 H 0.073 0.927 22 C -0.037 4.037 23 C -0.071 4.071 24 C -0.109 4.109 25 C 0.006 3.994 26 C 0.009 3.991 27 C -0.107 4.107 28 O -0.319 6.319 29 C 0.216 3.784 30 O -0.320 6.320 31 H 0.256 0.744 32 H 0.085 0.915 33 H 0.042 0.958 34 H 0.060 0.940 35 H 0.049 0.951 36 H 0.359 0.641 37 H 0.063 0.937 38 H 0.056 0.944 39 H 0.049 0.951 40 H 0.065 0.935 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.056 0.944 44 H 0.095 0.905 45 H 0.176 0.824 46 H 0.119 0.881 47 H 0.131 0.869 48 H 0.072 0.928 49 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.971 -13.779 2.502 14.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.190 4.190 3 Si 0.732 3.268 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.211 1.211 7 C -0.384 4.384 8 H 0.084 0.916 9 N -0.298 5.298 10 C 0.035 3.965 11 C -0.207 4.207 12 C 0.108 3.892 13 O -0.341 6.341 14 C -0.181 4.181 15 C -0.149 4.149 16 C -0.153 4.153 17 C -0.173 4.173 18 C -0.090 4.090 19 H 0.096 0.904 20 C 0.105 3.895 21 H 0.091 0.909 22 C -0.040 4.040 23 C -0.088 4.088 24 C -0.128 4.128 25 C -0.037 4.037 26 C -0.035 4.035 27 C -0.126 4.126 28 O -0.236 6.236 29 C 0.103 3.897 30 O -0.237 6.237 31 H 0.066 0.934 32 H 0.103 0.897 33 H 0.060 0.940 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.204 0.796 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.084 0.916 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.074 0.926 44 H 0.113 0.887 45 H 0.193 0.807 46 H 0.137 0.863 47 H 0.148 0.852 48 H 0.089 0.911 49 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -0.640 -13.661 1.826 13.797 hybrid contribution -0.168 0.572 0.423 0.731 sum -0.808 -13.089 2.250 13.305 Atomic orbital electron populations 1.69936 1.05179 1.25851 1.53513 1.24988 0.95265 0.98283 1.00457 0.86377 0.78949 0.83366 0.78098 1.20903 1.21697 1.21114 1.19123 0.92557 0.84464 1.42267 0.91649 1.44054 1.36049 1.00921 1.48823 1.21101 0.89631 0.97835 0.87965 1.22855 1.00542 0.96966 1.00313 1.20985 0.87310 0.91482 0.89461 1.86740 1.19112 1.89301 1.38977 1.22257 1.01345 0.96169 0.98375 1.21405 0.98458 0.96404 0.98615 1.21506 0.97439 0.98991 0.97395 1.22248 1.02011 0.95068 0.97936 1.21483 0.95466 0.94900 0.97198 0.90409 1.19460 0.93686 0.86062 0.90323 0.90878 1.20396 0.96789 0.91762 0.95062 1.21744 0.90948 1.00750 0.95388 1.20132 1.01059 0.93758 0.97874 1.19743 0.90143 0.97436 0.96394 1.19622 0.96735 0.89347 0.97771 1.20172 0.98570 0.97413 0.96446 1.87259 1.26334 1.43180 1.66871 1.25354 0.76514 0.85528 1.02277 1.87275 1.50908 1.23375 1.62143 0.93433 0.89656 0.94004 0.92125 0.93271 0.79581 0.91809 0.92536 0.93207 0.91591 0.92756 0.92760 0.92565 0.88669 0.80696 0.86304 0.85157 0.91068 0.86397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.92 11.20 55.49 0.62 -23.30 16 2 C 0.01 0.24 4.92 -17.43 -0.09 0.15 16 3 Si 0.90 20.75 29.59 -169.99 -5.03 15.72 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.25 -6.43 9.58 -15.05 -0.14 -6.57 16 8 H 0.07 1.65 7.88 -52.49 -0.41 1.23 16 9 N -0.58 -12.85 2.06 -166.08 -0.34 -13.19 16 10 C 0.16 3.36 4.15 -3.72 -0.02 3.34 16 11 C -0.17 -2.84 5.06 -26.60 -0.13 -2.97 16 12 C 0.15 2.22 0.55 -90.54 -0.05 2.17 16 13 O -0.54 -8.15 7.71 -35.23 -0.27 -8.42 16 14 C -0.14 -1.82 4.89 -26.73 -0.13 -1.95 16 15 C -0.11 -1.33 5.79 -26.74 -0.15 -1.49 16 16 C -0.12 -1.42 5.93 -26.74 -0.16 -1.58 16 17 C -0.14 -1.92 3.49 -26.73 -0.09 -2.01 16 18 C -0.07 -1.14 1.93 -90.45 -0.17 -1.31 16 19 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 20 C 0.21 4.12 2.70 -68.74 -0.19 3.94 16 21 H 0.07 1.47 7.93 -51.92 -0.41 1.06 16 22 C -0.04 -0.71 3.18 -104.62 -0.33 -1.05 16 23 C -0.07 -1.44 7.21 -39.58 -0.29 -1.73 16 24 C -0.11 -2.10 10.06 -39.47 -0.40 -2.49 16 25 C 0.01 0.11 7.15 -39.08 -0.28 -0.17 16 26 C 0.01 0.16 7.15 -39.09 -0.28 -0.12 16 27 C -0.11 -1.92 7.25 -39.47 -0.29 -2.20 16 28 O -0.32 -5.34 11.40 -45.72 -0.52 -5.86 16 29 C 0.22 2.90 8.89 101.05 0.90 3.80 16 30 O -0.32 -5.49 11.40 -45.70 -0.52 -6.01 16 31 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 32 H 0.09 2.07 6.07 -51.93 -0.32 1.76 16 33 H 0.04 0.91 4.63 -51.93 -0.24 0.67 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 35 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.36 4.52 9.04 45.56 0.41 4.93 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.84 7.70 -51.92 -0.40 0.44 16 41 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.06 0.76 7.79 -51.93 -0.40 0.36 16 44 H 0.10 1.47 4.13 -51.93 -0.21 1.26 16 45 H 0.18 4.03 4.52 -52.49 -0.24 3.79 16 46 H 0.12 2.12 8.06 -52.49 -0.42 1.70 16 47 H 0.13 2.12 5.42 -52.49 -0.28 1.84 16 48 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 49 H 0.12 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 357.47 15.07 5.39 5.39 Total: -1.00 -27.76 357.47 -9.26 -37.03 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: -6.30 Total: 10.89 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: -2.29 Total: -12.25 kcal Atomic # 7 Polarization: -36.76 SS G_CDS: 0.28 Total: -36.48 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: -1.31 Total: -20.29 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.03 Total: 15.72 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -27.76 -9.26 -37.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000013142489.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.248 kcal (2) G-P(sol) polarization free energy of solvation -27.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds