Wall clock time and date at job start Tue Mar 31 2020 05:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35999 * 117.00140 * 2 1 4 4 C 1.38637 * 119.97907 * 359.97438 * 3 2 1 5 5 C 1.38670 * 119.94296 * 179.74343 * 4 3 2 6 6 N 1.40155 * 120.05393 * 180.27413 * 5 4 3 7 7 C 1.34774 * 119.99886 * 312.70176 * 6 5 4 8 8 S 1.71203 * 120.00101 * 4.27134 * 7 6 5 9 9 N 1.34781 * 119.99888 * 184.26865 * 7 6 5 10 10 C 1.46501 * 119.99921 * 0.02562 * 9 7 6 11 11 C 1.46503 * 119.99690 * 179.97438 * 9 7 6 12 12 C 1.50696 * 109.47025 * 90.00445 * 11 9 7 13 13 H 1.08007 * 120.00069 * 0.02562 * 12 11 9 14 14 C 1.37874 * 120.00343 * 179.97438 * 12 11 9 15 15 N 1.31518 * 119.99985 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 120.00477 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46906 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.46953 * 119.99840 * 16 14 12 19 19 H 1.48495 * 109.47100 * 240.00098 * 16 14 12 20 20 C 1.39297 * 119.90037 * 0.55433 * 5 4 3 21 21 O 1.36060 * 120.02507 * 179.72360 * 20 5 4 22 22 C 1.42901 * 116.99904 * 179.72432 * 21 20 5 23 23 C 1.38481 * 119.95280 * 359.44400 * 20 5 4 24 24 C 1.38351 * 120.05756 * 0.27934 * 23 20 5 25 25 Cl 1.73599 * 119.95374 * 180.02562 * 24 23 20 26 26 H 1.09003 * 109.46748 * 59.99700 * 1 2 3 27 27 H 1.08992 * 109.47426 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47090 * 300.00424 * 1 2 3 29 29 H 1.07998 * 120.03074 * 0.02562 * 4 3 2 30 30 H 0.96998 * 119.99717 * 132.69488 * 6 5 4 31 31 H 1.09002 * 109.46609 * 89.99741 * 10 9 7 32 32 H 1.09002 * 109.46610 * 209.99654 * 10 9 7 33 33 H 1.08993 * 109.46899 * 330.00055 * 10 9 7 34 34 H 1.08997 * 109.46984 * 210.00100 * 11 9 7 35 35 H 1.08995 * 109.47180 * 330.00382 * 11 9 7 36 36 H 0.96999 * 120.00354 * 179.97438 * 15 14 12 37 37 H 1.09001 * 109.47181 * 59.99954 * 22 21 20 38 38 H 1.09002 * 109.47339 * 299.99514 * 22 21 20 39 39 H 1.09003 * 109.46653 * 179.97438 * 22 21 20 40 40 H 1.08009 * 119.97209 * 180.25464 * 23 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2910 2.3742 -0.0005 5 6 1.9214 3.6093 0.0048 6 7 1.1599 4.7860 0.0101 7 6 0.1291 4.9254 -0.8469 8 16 -0.3189 3.6246 -1.8658 9 7 -0.5489 6.0889 -0.9018 10 6 -0.1652 7.2022 -0.0303 11 6 -1.6690 6.2406 -1.8339 12 6 -2.9471 5.8188 -1.1561 13 1 -2.9272 5.4727 -0.1332 14 6 -4.1422 5.8756 -1.8414 15 7 -4.1668 6.2984 -3.0865 16 14 -5.7264 5.3520 -1.0015 17 1 -5.4305 4.9194 0.3880 18 1 -6.6732 6.4957 -0.9733 19 1 -6.3349 4.2240 -1.7515 20 6 3.3126 3.6790 -0.0009 21 8 3.9337 4.8895 -0.0013 22 6 5.3627 4.8855 -0.0012 23 6 4.0631 2.5152 -0.0003 24 6 3.4323 1.2838 0.0001 25 17 4.3758 -0.1734 0.0015 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 0.2125 2.3179 -0.0005 30 1 1.3747 5.4999 0.6307 31 1 0.5762 7.8207 -0.5362 32 1 -1.0447 7.8037 0.1992 33 1 0.2585 6.8104 0.8943 34 1 -1.7476 7.2836 -2.1407 35 1 -1.4993 5.6157 -2.7106 36 1 -5.0074 6.3381 -3.5688 37 1 5.7246 4.3703 -0.8910 38 1 5.7246 4.3711 0.8890 39 1 5.7288 5.9122 -0.0021 40 1 5.1419 2.5688 -0.0006 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000013658397.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:21 Heat of formation + Delta-G solvation = -14.633092 kcal Electronic energy + Delta-G solvation = -25719.606281 eV Core-core repulsion = 21881.516184 eV Total energy + Delta-G solvation = -3838.090097 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 344.075 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.82173 -39.05197 -38.79132 -36.81754 -36.40722 -34.74525 -32.66879 -30.04303 -29.66166 -28.33524 -27.94603 -27.10291 -26.19862 -23.81339 -22.30853 -22.17804 -20.95814 -18.98662 -17.93151 -17.72529 -16.91035 -16.70265 -16.45013 -15.95150 -15.50818 -15.33375 -15.13215 -14.64643 -14.42647 -14.18429 -13.71572 -13.57477 -13.41192 -13.14565 -12.60940 -12.41721 -12.22258 -12.11413 -11.80967 -11.68089 -11.45847 -11.32657 -11.23905 -10.97726 -10.90792 -10.76869 -10.51147 -10.30223 -10.20986 -9.83822 -9.08284 -8.51064 -8.39562 -7.63060 -7.01988 -6.33157 -6.11638 -4.16131 0.93052 1.33629 2.05412 2.12531 2.53622 3.02421 3.14029 3.26545 3.35213 3.36866 3.39376 3.58614 3.72665 4.39132 4.66726 4.78914 4.94792 4.98171 5.07098 5.16190 5.24504 5.26517 5.35950 5.39931 5.44948 5.47498 5.61627 5.74105 5.76413 5.85963 6.03442 6.31459 6.41261 6.65018 7.05897 7.10894 7.34416 7.38220 7.47647 7.81627 7.84617 8.06020 8.82380 9.47082 10.96920 Molecular weight = 344.07amu Principal moments of inertia in cm(-1) A = 0.014032 B = 0.003567 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.904230 B = 7846.919246 C = 9370.496159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.306 6.306 3 C 0.111 3.889 4 C -0.108 4.108 5 C 0.160 3.840 6 N -0.644 5.644 7 C 0.553 3.447 8 S -0.635 6.635 9 N -0.534 5.534 10 C 0.061 3.939 11 C 0.235 3.765 12 C -0.521 4.521 13 H 0.057 0.943 14 C 0.068 3.932 15 N -0.889 5.889 16 Si 0.900 3.100 17 H -0.274 1.274 18 H -0.284 1.284 19 H -0.281 1.281 20 C 0.094 3.906 21 O -0.313 6.313 22 C 0.027 3.973 23 C -0.165 4.165 24 C -0.033 4.033 25 Cl -0.061 7.061 26 H 0.071 0.929 27 H 0.098 0.902 28 H 0.054 0.946 29 H 0.172 0.828 30 H 0.404 0.596 31 H 0.064 0.936 32 H 0.094 0.906 33 H 0.059 0.941 34 H 0.040 0.960 35 H 0.080 0.920 36 H 0.264 0.736 37 H 0.057 0.943 38 H 0.055 0.945 39 H 0.099 0.901 40 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.953 -3.727 10.173 20.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.219 6.219 3 C 0.062 3.938 4 C -0.132 4.132 5 C 0.064 3.936 6 N -0.276 5.276 7 C 0.195 3.805 8 S -0.501 6.501 9 N -0.237 5.237 10 C -0.085 4.085 11 C 0.117 3.883 12 C -0.560 4.560 13 H 0.075 0.925 14 C -0.135 4.135 15 N -0.527 5.527 16 Si 0.728 3.272 17 H -0.199 1.199 18 H -0.211 1.211 19 H -0.207 1.207 20 C 0.046 3.954 21 O -0.227 6.227 22 C -0.068 4.068 23 C -0.185 4.185 24 C -0.061 4.061 25 Cl -0.032 7.032 26 H 0.090 0.910 27 H 0.117 0.883 28 H 0.073 0.927 29 H 0.189 0.811 30 H 0.244 0.756 31 H 0.083 0.917 32 H 0.113 0.887 33 H 0.077 0.923 34 H 0.058 0.942 35 H 0.098 0.902 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.118 0.882 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 17.459 -4.463 9.271 20.266 hybrid contribution -0.483 0.792 1.161 1.486 sum 16.976 -3.671 10.432 20.260 Atomic orbital electron populations 1.23169 0.77530 1.03801 1.02666 1.86100 1.21896 1.25091 1.88821 1.18260 0.89833 0.85311 1.00362 1.21542 1.02722 0.88981 0.99924 1.16345 0.85916 0.85827 1.05535 1.42095 1.30158 1.18261 1.37043 1.22282 0.81949 0.90454 0.85795 1.93056 1.79019 1.29455 1.48578 1.47806 1.30566 1.08406 1.36929 1.22019 1.02552 0.90455 0.93522 1.20060 0.80461 0.98754 0.89053 1.21133 0.90814 1.44929 0.99132 0.92476 1.24831 0.99008 0.94893 0.94757 1.69927 1.26941 1.46271 1.09563 0.86409 0.82936 0.78315 0.79543 1.19892 1.21069 1.20676 1.18489 0.90083 0.84634 1.02165 1.86081 1.21332 1.25883 1.89420 1.23066 0.78286 1.03955 1.01465 1.20524 1.00146 0.89182 1.08682 1.19781 0.88568 0.87908 1.09817 1.98346 1.71872 1.35946 1.97024 0.91011 0.88333 0.92732 0.81067 0.75570 0.91749 0.88704 0.92254 0.94204 0.90204 0.92605 0.92463 0.92601 0.88246 0.83724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.81 101.05 0.99 1.29 16 2 O -0.31 -4.47 9.95 -19.74 -0.20 -4.67 16 3 C 0.11 1.67 6.68 -39.24 -0.26 1.40 16 4 C -0.11 -1.73 6.86 -39.27 -0.27 -2.00 16 5 C 0.16 2.46 5.89 -83.50 -0.49 1.97 16 6 N -0.64 -10.06 4.94 -11.29 -0.06 -10.11 16 7 C 0.55 10.87 7.56 -86.92 -0.66 10.21 16 8 S -0.64 -14.89 24.40 -107.50 -2.62 -17.51 16 9 N -0.53 -10.41 2.86 -185.00 -0.53 -10.94 16 10 C 0.06 0.84 10.24 59.85 0.61 1.45 16 11 C 0.23 5.71 4.92 -5.19 -0.03 5.69 16 12 C -0.52 -13.85 9.39 -34.44 -0.32 -14.17 16 13 H 0.06 1.53 7.81 -52.48 -0.41 1.12 16 14 C 0.07 1.86 5.46 -17.82 -0.10 1.77 16 15 N -0.89 -25.45 13.29 55.43 0.74 -24.71 16 16 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 17 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 C 0.09 1.25 6.70 -39.10 -0.26 0.99 16 21 O -0.31 -3.67 10.24 -19.93 -0.20 -3.87 16 22 C 0.03 0.20 9.81 101.05 0.99 1.19 16 23 C -0.16 -1.98 8.81 -39.45 -0.35 -2.33 16 24 C -0.03 -0.44 6.33 -39.34 -0.25 -0.69 16 25 Cl -0.06 -0.75 28.49 -51.86 -1.48 -2.22 16 26 H 0.07 1.05 7.66 -51.93 -0.40 0.66 16 27 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.05 0.65 7.66 -51.93 -0.40 0.25 16 29 H 0.17 3.02 4.54 -49.69 -0.23 2.80 16 30 H 0.40 5.13 6.52 -40.82 -0.27 4.87 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.09 1.32 8.07 -51.93 -0.42 0.90 16 33 H 0.06 0.65 6.30 -51.93 -0.33 0.32 16 34 H 0.04 0.98 8.07 -51.93 -0.42 0.56 16 35 H 0.08 2.22 6.58 -51.93 -0.34 1.88 16 36 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 37 H 0.06 0.40 7.66 -51.93 -0.40 0.00 16 38 H 0.06 0.33 7.66 -51.93 -0.40 -0.07 16 39 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.15 1.34 6.29 -52.48 -0.33 1.01 16 LS Contribution 361.06 15.07 5.44 5.44 Total: -1.00 -32.85 361.06 -9.05 -41.90 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -4.73 Total: 3.71 kcal Atomic # 6 Polarization: 7.16 SS G_CDS: -0.39 Total: 6.77 kcal Atomic # 7 Polarization: -45.92 SS G_CDS: 0.15 Total: -45.77 kcal Atomic # 8 Polarization: -8.14 SS G_CDS: -0.40 Total: -8.54 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: -14.89 SS G_CDS: -2.62 Total: -17.51 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -1.48 Total: -2.22 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.85 -9.05 -41.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000013658397.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.265 kcal (2) G-P(sol) polarization free energy of solvation -32.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds