Wall clock time and date at job start Tue Mar 31 2020 05:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86793 * 120.00337 * 2 1 4 4 H 1.48497 * 109.47182 * 269.99656 * 3 2 1 5 5 H 1.48503 * 109.47476 * 29.99987 * 3 2 1 6 6 H 1.48508 * 109.47248 * 149.99836 * 3 2 1 7 7 C 1.38948 * 119.99507 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00434 * 359.97438 * 7 2 1 9 9 N 1.37095 * 120.00202 * 180.02562 * 7 2 1 10 10 C 1.34777 * 120.00361 * 179.97438 * 9 7 2 11 11 O 1.21288 * 119.99942 * 359.97438 * 10 9 7 12 12 C 1.50699 * 119.99869 * 179.97438 * 10 9 7 13 13 C 1.53007 * 109.46984 * 180.02562 * 12 10 9 14 14 N 1.46498 * 109.47312 * 180.02562 * 13 12 10 15 15 C 1.34777 * 120.00197 * 180.02562 * 14 13 12 16 16 O 1.21277 * 119.99572 * 359.97438 * 15 14 13 17 17 C 1.50699 * 119.99869 * 179.97438 * 15 14 13 18 18 C 1.50697 * 109.46664 * 179.97438 * 17 15 14 19 19 N 1.29974 * 120.00008 * 0.02562 * 18 17 15 20 20 N 1.39508 * 122.69779 * 179.72159 * 19 18 17 21 21 H 0.96996 * 119.12217 * 179.97438 * 20 19 18 22 22 C 1.34937 * 121.75018 * 0.02562 * 20 19 18 23 23 O 1.21808 * 120.63127 * 180.02562 * 22 20 19 24 24 C 1.46812 * 118.74114 * 359.97438 * 22 20 19 25 25 C 1.39425 * 122.01197 * 180.02562 * 24 22 20 26 26 C 1.37772 * 119.38757 * 179.97438 * 25 24 22 27 27 C 1.38893 * 120.69818 * 0.09684 * 26 25 24 28 28 C 1.36686 * 120.91546 * 359.91856 * 27 26 25 29 29 C 1.39616 * 119.67330 * 0.02562 * 28 27 26 30 30 H 0.97006 * 119.99591 * 0.02562 * 1 2 3 31 31 H 0.97007 * 119.99534 * 359.97438 * 9 7 2 32 32 H 1.08998 * 109.47212 * 60.00720 * 12 10 9 33 33 H 1.08994 * 109.47392 * 299.99997 * 12 10 9 34 34 H 1.08996 * 109.46932 * 59.99582 * 13 12 10 35 35 H 1.09003 * 109.46839 * 299.99888 * 13 12 10 36 36 H 0.97007 * 119.99700 * 359.97438 * 14 13 12 37 37 H 1.09004 * 109.47045 * 60.00036 * 17 15 14 38 38 H 1.08994 * 109.47392 * 299.99997 * 17 15 14 39 39 H 1.07997 * 120.30696 * 359.95458 * 25 24 22 40 40 H 1.08004 * 119.64574 * 180.02562 * 26 25 24 41 41 H 1.07996 * 119.54337 * 179.97438 * 27 26 25 42 42 H 1.07996 * 120.16637 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.4958 2.0462 -1.4000 5 1 1.4457 2.6527 0.7000 6 1 3.5458 1.4400 0.7001 7 6 2.0088 -1.2034 0.0005 8 1 1.4687 -2.1387 0.0014 9 7 3.3797 -1.2036 0.0011 10 6 4.0535 -2.3708 0.0021 11 8 3.4470 -3.4211 0.0031 12 6 5.5605 -2.3708 0.0021 13 6 6.0705 -3.8134 0.0028 14 7 7.5354 -3.8136 0.0034 15 6 8.2092 -4.9808 0.0035 16 8 7.6027 -6.0310 0.0035 17 6 9.7162 -4.9809 0.0035 18 6 10.2184 -6.4017 0.0043 19 7 9.3737 -7.3895 0.0043 20 7 9.7761 -8.7253 -0.0007 21 1 9.1010 -9.4217 -0.0001 22 6 11.0796 -9.0741 -0.0054 23 8 11.4081 -10.2471 -0.0102 24 6 12.0943 -8.0132 -0.0058 25 6 13.4596 -8.2962 -0.0110 26 6 14.3652 -7.2580 -0.0116 27 6 13.9314 -5.9386 -0.0050 28 6 12.5981 -5.6378 0.0005 29 6 11.6569 -6.6690 0.0001 30 1 -0.4850 0.8401 -0.0004 31 1 3.8648 -0.3635 0.0007 32 1 5.9239 -1.8564 0.8917 33 1 5.9239 -1.8579 -0.8883 34 1 5.7070 -4.3276 -0.8869 35 1 5.7071 -4.3268 0.8930 36 1 8.0205 -2.9735 0.0030 37 1 10.0796 -4.4670 0.8935 38 1 10.0797 -4.4672 -0.8864 39 1 13.8039 -9.3198 -0.0142 40 1 15.4238 -7.4725 -0.0160 41 1 14.6576 -5.1392 -0.0051 42 1 12.2742 -4.6075 0.0052 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000013728856.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:17 Heat of formation + Delta-G solvation = -27.077009 kcal Electronic energy + Delta-G solvation = -27828.124556 eV Core-core repulsion = 23581.467581 eV Total energy + Delta-G solvation = -4246.656976 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.132 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.35776 -39.77682 -38.74046 -38.48203 -37.34911 -35.09010 -34.01964 -33.79192 -31.84476 -31.77157 -31.19680 -30.73612 -28.84034 -25.46146 -24.90255 -24.32703 -22.91568 -21.79060 -20.67680 -19.56279 -19.44570 -18.92368 -18.21094 -17.66922 -16.73753 -16.42572 -16.24235 -15.92441 -15.67266 -15.60534 -15.14709 -14.99011 -14.93232 -14.76718 -14.45407 -13.67124 -13.65523 -13.43493 -13.29750 -13.17761 -12.72840 -12.68927 -12.62602 -12.19851 -12.12019 -12.05206 -11.53734 -11.39796 -11.34540 -11.08123 -10.64809 -10.33983 -10.12873 -10.02737 -9.71392 -9.64376 -9.45416 -9.01014 -8.81187 -8.63634 -8.24613 -6.36154 -3.88153 0.03800 0.35981 1.61333 2.11898 2.33668 2.62085 2.93064 2.97119 3.01967 3.11053 3.35594 3.46454 3.65381 3.83232 4.04240 4.04999 4.26070 4.46333 4.52451 4.65712 4.67739 4.78305 4.86627 4.95329 5.00364 5.13570 5.16716 5.29647 5.34243 5.44700 5.58573 5.63255 5.77532 5.81445 5.94711 6.12606 6.17839 6.22814 6.25592 6.49288 7.34701 7.43874 7.51291 7.69024 8.08713 8.22849 8.52044 8.88865 9.36128 9.74377 10.76760 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.026247 B = 0.001722 C = 0.001618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.547781 B =16255.965982 C =17296.747093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.042 3.958 3 Si 0.881 3.119 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.269 1.269 7 C -0.308 4.308 8 H 0.120 0.880 9 N -0.586 5.586 10 C 0.450 3.550 11 O -0.574 6.574 12 C -0.145 4.145 13 C 0.140 3.860 14 N -0.733 5.733 15 C 0.502 3.498 16 O -0.495 6.495 17 C -0.078 4.078 18 C 0.115 3.885 19 N -0.156 5.156 20 N -0.535 5.535 21 H 0.438 0.562 22 C 0.525 3.475 23 O -0.529 6.529 24 C -0.128 4.128 25 C -0.054 4.054 26 C -0.117 4.117 27 C -0.088 4.088 28 C -0.102 4.102 29 C -0.049 4.049 30 H 0.274 0.726 31 H 0.371 0.629 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.397 0.603 37 H 0.122 0.878 38 H 0.122 0.878 39 H 0.142 0.858 40 H 0.135 0.865 41 H 0.135 0.865 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.117 -4.794 -0.017 33.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.162 4.162 3 Si 0.708 3.292 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.195 1.195 7 C -0.437 4.437 8 H 0.138 0.862 9 N -0.225 5.225 10 C 0.236 3.764 11 O -0.458 6.458 12 C -0.186 4.186 13 C 0.017 3.983 14 N -0.386 5.386 15 C 0.285 3.715 16 O -0.366 6.366 17 C -0.120 4.120 18 C -0.072 4.072 19 N 0.033 4.967 20 N -0.280 5.280 21 H 0.282 0.718 22 C 0.314 3.686 23 O -0.405 6.405 24 C -0.134 4.134 25 C -0.072 4.072 26 C -0.137 4.137 27 C -0.106 4.106 28 C -0.122 4.122 29 C -0.052 4.052 30 H 0.085 0.915 31 H 0.204 0.796 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.230 0.770 37 H 0.140 0.860 38 H 0.140 0.860 39 H 0.160 0.840 40 H 0.153 0.847 41 H 0.153 0.847 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 31.329 -7.076 -0.016 32.118 hybrid contribution 1.336 1.716 0.016 2.175 sum 32.665 -5.360 0.000 33.102 Atomic orbital electron populations 1.69627 1.05684 1.27586 1.48915 1.25065 0.95519 0.98055 0.97530 0.86651 0.79749 0.83960 0.78884 1.19590 1.20148 1.19476 1.19465 0.79263 0.96717 1.48254 0.86210 1.42216 1.07583 1.06163 1.66500 1.19532 0.87975 0.84573 0.84319 1.90605 1.69780 1.30925 1.54443 1.21682 0.96037 0.97516 1.03395 1.21029 0.77122 0.96094 1.04096 1.46050 1.08114 1.08159 1.76319 1.20163 0.89000 0.84339 0.77962 1.90863 1.69158 1.30201 1.46398 1.20519 0.94363 0.90899 1.06204 1.22829 0.88574 0.94943 1.00817 1.75545 1.24840 0.87556 1.08776 1.47437 1.07233 1.05493 1.67836 0.71762 1.18765 0.83556 0.89101 0.77149 1.90919 1.80628 1.18659 1.50295 1.20009 0.94880 0.92083 1.06437 1.21150 0.90619 1.00698 0.94781 1.21344 1.00254 0.92391 0.99673 1.21138 0.95970 0.96999 0.96510 1.20987 0.92571 0.98916 0.99722 1.19529 0.93029 0.93150 0.99540 0.91536 0.79589 0.89735 0.89729 0.90505 0.90520 0.76992 0.86047 0.86039 0.84025 0.84719 0.84740 0.84090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.24 13.96 55.50 0.77 -24.47 16 2 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 3 Si 0.88 18.64 27.74 -169.99 -4.71 13.92 16 4 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 5 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 6 H -0.27 -5.10 6.52 56.52 0.37 -4.73 16 7 C -0.31 -8.53 10.16 -14.93 -0.15 -8.68 16 8 H 0.12 3.82 7.39 -52.49 -0.39 3.43 16 9 N -0.59 -13.34 5.09 -10.96 -0.06 -13.40 16 10 C 0.45 9.66 7.78 -10.99 -0.09 9.57 16 11 O -0.57 -15.06 15.56 5.55 0.09 -14.97 16 12 C -0.15 -2.02 5.81 -27.88 -0.16 -2.19 16 13 C 0.14 1.99 4.96 -4.04 -0.02 1.97 16 14 N -0.73 -7.01 5.56 -60.29 -0.33 -7.35 16 15 C 0.50 5.38 7.82 -10.99 -0.09 5.30 16 16 O -0.49 -7.81 13.92 5.56 0.08 -7.73 16 17 C -0.08 -0.46 4.91 -29.04 -0.14 -0.60 16 18 C 0.12 1.06 6.99 -80.14 -0.56 0.50 16 19 N -0.16 -1.94 8.57 34.88 0.30 -1.64 16 20 N -0.54 -6.40 6.59 30.34 0.20 -6.20 16 21 H 0.44 4.68 8.92 -183.05 -1.63 3.05 16 22 C 0.52 6.47 8.01 -12.72 -0.10 6.37 16 23 O -0.53 -7.78 17.42 5.09 0.09 -7.69 16 24 C -0.13 -1.26 5.90 -104.80 -0.62 -1.88 16 25 C -0.05 -0.41 9.67 -39.31 -0.38 -0.79 16 26 C -0.12 -0.57 10.01 -39.51 -0.40 -0.97 16 27 C -0.09 -0.34 9.96 -39.90 -0.40 -0.74 16 28 C -0.10 -0.47 9.46 -39.63 -0.38 -0.84 16 29 C -0.05 -0.39 5.89 -104.95 -0.62 -1.01 16 30 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 31 H 0.37 7.26 5.76 -40.82 -0.24 7.02 16 32 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.08 1.28 8.10 -51.93 -0.42 0.86 16 35 H 0.08 1.28 8.10 -51.93 -0.42 0.86 16 36 H 0.40 2.17 8.47 -40.82 -0.35 1.83 16 37 H 0.12 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.12 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.14 1.04 7.81 -52.49 -0.41 0.63 16 40 H 0.13 0.32 8.06 -52.48 -0.42 -0.10 16 41 H 0.13 0.15 8.06 -52.49 -0.42 -0.27 16 42 H 0.14 0.19 7.27 -52.49 -0.38 -0.19 16 LS Contribution 366.77 15.07 5.53 5.53 Total: -1.00 -39.30 366.77 -8.18 -47.48 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -5.94 Total: 9.46 kcal Atomic # 6 Polarization: 11.23 SS G_CDS: -4.19 Total: 7.04 kcal Atomic # 7 Polarization: -53.93 SS G_CDS: 0.88 Total: -53.05 kcal Atomic # 8 Polarization: -30.64 SS G_CDS: 0.25 Total: -30.39 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -4.71 Total: 13.92 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -39.30 -8.18 -47.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000013728856.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.399 kcal (2) G-P(sol) polarization free energy of solvation -39.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds