Wall clock time and date at job start Tue Mar 31 2020 07:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47009 * 2 1 4 4 N 1.46508 * 109.46936 * 119.99592 * 2 1 3 5 5 C 1.38860 * 119.99925 * 274.99998 * 4 2 1 6 6 C 1.39564 * 119.84072 * 359.72550 * 5 4 2 7 7 C 1.36337 * 120.15645 * 179.71731 * 6 5 4 8 8 C 1.40890 * 119.83933 * 0.55760 * 7 6 5 9 9 C 1.41136 * 120.15705 * 179.70037 * 8 7 6 10 10 H 1.07997 * 120.00141 * 155.10944 * 9 8 7 11 11 C 1.39865 * 120.00015 * 335.10651 * 9 8 7 12 12 N 1.30906 * 119.99898 * 342.12977 * 11 9 8 13 13 Si 1.86794 * 120.00053 * 162.13266 * 11 9 8 14 14 H 1.48506 * 109.47373 * 94.65504 * 13 11 9 15 15 H 1.48500 * 109.47201 * 214.64973 * 13 11 9 16 16 H 1.48495 * 109.47399 * 334.65290 * 13 11 9 17 17 C 1.40889 * 119.68401 * 359.71620 * 8 7 6 18 18 C 1.36341 * 119.83853 * 0.02562 * 17 8 7 19 19 C 1.50699 * 109.47217 * 239.99232 * 2 1 3 20 20 O 1.21232 * 120.00103 * 240.00143 * 19 2 1 21 21 N 1.34779 * 119.99603 * 59.73167 * 19 2 1 22 22 C 1.34776 * 119.99963 * 180.02562 * 21 19 2 23 23 O 1.21539 * 119.99847 * 359.97438 * 22 21 19 24 24 N 1.34779 * 119.99963 * 179.97438 * 22 21 19 25 25 C 1.46502 * 119.99794 * 179.97438 * 24 22 21 26 26 C 1.54266 * 110.02718 * 272.90434 * 25 24 22 27 27 C 1.54974 * 104.15888 * 217.13835 * 26 25 24 28 28 C 1.54886 * 102.77506 * 37.88707 * 27 26 25 29 29 C 1.53869 * 110.03299 * 155.68670 * 25 24 22 30 30 H 1.08998 * 109.47091 * 300.00759 * 1 2 3 31 31 H 1.08997 * 109.46898 * 60.00085 * 1 2 3 32 32 H 1.08994 * 109.47218 * 180.02562 * 1 2 3 33 33 H 0.96997 * 119.99973 * 94.99908 * 4 2 1 34 34 H 1.08000 * 119.91912 * 359.97438 * 6 5 4 35 35 H 1.08006 * 120.08115 * 180.27380 * 7 6 5 36 36 H 0.96999 * 120.00033 * 179.97438 * 12 11 9 37 37 H 1.08002 * 120.07925 * 179.97438 * 17 8 7 38 38 H 1.07997 * 119.91922 * 179.97438 * 18 17 8 39 39 H 0.97001 * 120.00258 * 359.97438 * 21 19 2 40 40 H 0.96993 * 119.99928 * 359.97438 * 24 22 21 41 41 H 1.08996 * 110.01753 * 34.29290 * 25 24 22 42 42 H 1.09002 * 110.49144 * 335.77951 * 26 25 24 43 43 H 1.09002 * 110.49092 * 98.42839 * 26 25 24 44 44 H 1.09003 * 110.71810 * 279.57400 * 27 26 25 45 45 H 1.08993 * 110.92503 * 156.29894 * 27 26 25 46 46 H 1.08995 * 110.48511 * 203.40901 * 28 27 26 47 47 H 1.09000 * 110.60450 * 80.82149 * 28 27 26 48 48 H 1.08991 * 110.03539 * 238.56604 * 29 25 24 49 49 H 1.09004 * 110.03509 * 359.97438 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.1509 0.0023 2.3924 6 6 1.8235 1.3577 2.4498 7 6 1.9457 2.0428 3.6221 8 6 2.4151 1.3820 4.7746 9 6 2.5502 2.0863 5.9902 10 1 2.5118 1.5547 6.9294 11 6 2.7339 3.4728 5.9784 12 7 3.1271 4.0717 4.8828 13 14 2.4184 4.4699 7.5261 14 1 3.6938 4.6562 8.2637 15 1 1.8627 5.7963 7.1557 16 1 1.4479 3.7502 8.3894 17 6 2.7491 0.0150 4.7076 18 6 2.6168 -0.6588 3.5298 19 6 2.0324 -0.7106 -1.2304 20 8 2.7293 -1.6962 -1.1190 21 7 1.7023 -0.2534 -2.4545 22 6 2.1511 -0.8891 -3.5549 23 8 2.8538 -1.8744 -3.4433 24 7 1.8206 -0.4322 -4.7790 25 6 2.3089 -1.1229 -5.9752 26 6 3.6983 -0.5801 -6.3685 27 6 3.6780 -0.5735 -7.9181 28 6 2.2266 -0.1386 -8.2397 29 6 1.3735 -0.8429 -7.1644 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 2.2490 -1.6317 1.1528 34 1 1.4685 1.8641 1.5643 35 1 1.6878 3.0907 3.6662 36 1 3.2541 5.0333 4.8745 37 1 3.1099 -0.4978 5.5871 38 1 2.8729 -1.7066 3.4769 39 1 1.1411 0.5328 -2.5436 40 1 1.2594 0.3539 -4.8681 41 1 2.3659 -2.1954 -5.7895 42 1 3.8356 0.4309 -5.9847 43 1 4.4840 -1.2393 -5.9993 44 1 3.8785 -1.5704 -8.3106 45 1 4.3938 0.1469 -8.3137 46 1 1.9392 -0.4757 -9.2356 47 1 2.1238 0.9435 -8.1598 48 1 0.9773 -1.7794 -7.5564 49 1 0.5559 -0.1934 -6.8515 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000014095035.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:55 Heat of formation + Delta-G solvation = -45.840155 kcal Electronic energy + Delta-G solvation = -29186.550380 eV Core-core repulsion = 25113.027301 eV Total energy + Delta-G solvation = -4073.523080 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.37615 -39.44360 -38.17143 -37.49984 -35.29570 -34.76294 -33.78998 -33.19181 -30.67133 -29.47397 -29.18598 -28.20754 -27.91512 -25.19597 -24.16840 -22.28984 -21.28772 -21.11575 -20.79394 -20.44621 -19.91306 -18.91623 -17.49227 -17.23269 -16.57620 -16.18597 -15.81776 -15.74354 -15.38662 -15.01669 -14.79380 -14.44445 -14.22473 -13.89705 -13.82218 -13.61677 -13.17693 -12.67423 -12.53209 -12.49917 -12.38063 -12.02874 -11.97419 -11.75331 -11.63673 -11.63581 -11.50164 -11.26265 -11.19712 -11.07680 -11.03073 -10.89004 -10.83715 -10.49742 -10.22101 -9.73518 -9.64062 -9.41178 -9.31217 -9.27150 -8.62131 -7.51950 -6.66697 -6.43953 -4.05773 2.00732 2.11781 2.89070 3.08009 3.13739 3.13765 3.18902 3.32703 3.60283 4.04087 4.07791 4.17787 4.19969 4.42831 4.46488 4.73402 4.93684 4.99250 5.05437 5.08656 5.12515 5.19508 5.21858 5.32235 5.45975 5.54528 5.60423 5.64403 5.78833 5.80735 5.81316 5.85897 5.95065 6.16415 6.18415 6.25104 6.30380 6.33236 6.86253 6.90500 7.17552 7.26749 7.33764 7.51397 7.66631 7.80958 7.93500 8.12619 8.18868 8.25646 8.44654 8.66107 8.76680 9.04056 9.12424 10.35096 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.022550 B = 0.001776 C = 0.001717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.395998 B =15759.510707 C =16302.851711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.149 3.851 3 H 0.105 0.895 4 N -0.742 5.742 5 C 0.091 3.909 6 C -0.165 4.165 7 C -0.125 4.125 8 C 0.076 3.924 9 C -0.466 4.466 10 H 0.073 0.927 11 C 0.075 3.925 12 N -0.807 5.807 13 Si 0.902 3.098 14 H -0.273 1.273 15 H -0.278 1.278 16 H -0.263 1.263 17 C -0.185 4.185 18 C -0.152 4.152 19 C 0.514 3.486 20 O -0.461 6.461 21 N -0.691 5.691 22 C 0.693 3.307 23 O -0.530 6.530 24 N -0.735 5.735 25 C 0.156 3.844 26 C -0.137 4.137 27 C -0.125 4.125 28 C -0.124 4.124 29 C -0.131 4.131 30 H 0.081 0.919 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.395 0.605 34 H 0.088 0.912 35 H 0.119 0.881 36 H 0.276 0.724 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.409 0.591 40 H 0.397 0.603 41 H 0.093 0.907 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.069 0.931 45 H 0.069 0.931 46 H 0.068 0.932 47 H 0.067 0.933 48 H 0.076 0.924 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.705 -2.381 -24.838 25.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.038 3.962 3 H 0.122 0.878 4 N -0.380 5.380 5 C -0.005 4.005 6 C -0.187 4.187 7 C -0.145 4.145 8 C 0.073 3.927 9 C -0.497 4.497 10 H 0.091 0.909 11 C -0.140 4.140 12 N -0.435 5.435 13 Si 0.727 3.273 14 H -0.199 1.199 15 H -0.203 1.203 16 H -0.187 1.187 17 C -0.205 4.205 18 C -0.174 4.174 19 C 0.300 3.700 20 O -0.328 6.328 21 N -0.357 5.357 22 C 0.393 3.607 23 O -0.402 6.402 24 N -0.392 5.392 25 C 0.051 3.949 26 C -0.176 4.176 27 C -0.163 4.163 28 C -0.162 4.162 29 C -0.169 4.169 30 H 0.100 0.900 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.231 0.769 34 H 0.107 0.893 35 H 0.136 0.864 36 H 0.087 0.913 37 H 0.111 0.889 38 H 0.106 0.894 39 H 0.244 0.756 40 H 0.232 0.768 41 H 0.111 0.889 42 H 0.090 0.910 43 H 0.092 0.908 44 H 0.088 0.912 45 H 0.088 0.912 46 H 0.087 0.913 47 H 0.086 0.914 48 H 0.095 0.905 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.583 -3.573 -24.779 25.650 hybrid contribution -0.537 1.169 0.483 1.374 sum -6.120 -2.404 -24.296 25.170 Atomic orbital electron populations 1.22313 0.94261 1.02912 1.02950 1.20439 0.94711 0.97448 0.83637 0.87791 1.43645 1.77070 1.11725 1.05512 1.17282 1.06486 0.91726 0.85048 1.20077 1.08383 0.92294 0.97944 1.20908 1.01517 0.99866 0.92230 1.17515 0.90790 0.90987 0.93441 1.19375 1.44891 0.91730 0.93684 0.90909 1.25796 0.92528 0.98450 0.97259 1.69857 1.33916 1.11144 1.28535 0.86408 0.79415 0.79091 0.82375 1.19856 1.20298 1.18651 1.20565 1.07936 0.95988 0.96020 1.19824 1.06870 0.97793 0.92880 1.21410 0.79849 0.84947 0.83822 1.90803 1.32602 1.23724 1.85643 1.44233 1.52430 1.32564 1.06505 1.16209 0.80748 0.83246 0.80487 1.91068 1.38482 1.25403 1.85209 1.45487 1.56142 1.33381 1.04179 1.21589 0.93022 0.97773 0.82559 1.22846 0.97160 1.01960 0.95657 1.22494 0.96663 1.01734 0.95379 1.22359 0.95060 1.00337 0.98436 1.22444 0.97972 1.01593 0.94892 0.89999 0.92404 0.92063 0.76949 0.89348 0.86371 0.91340 0.88925 0.89354 0.75562 0.76841 0.88877 0.91044 0.90835 0.91199 0.91242 0.91337 0.91395 0.90516 0.90942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.86 9.31 37.16 0.35 -1.51 16 2 C 0.15 2.10 2.67 -69.08 -0.18 1.91 16 3 H 0.10 1.43 6.44 -51.93 -0.33 1.09 16 4 N -0.74 -13.38 5.09 -53.15 -0.27 -13.65 16 5 C 0.09 1.95 6.65 -83.69 -0.56 1.39 16 6 C -0.17 -3.66 8.76 -39.77 -0.35 -4.01 16 7 C -0.13 -3.17 8.63 -39.26 -0.34 -3.51 16 8 C 0.08 2.02 5.57 -106.79 -0.59 1.42 16 9 C -0.47 -12.52 9.03 -37.87 -0.34 -12.86 16 10 H 0.07 1.90 7.91 -52.49 -0.41 1.48 16 11 C 0.07 1.91 5.13 -17.34 -0.09 1.82 16 12 N -0.81 -21.07 10.98 55.54 0.61 -20.46 16 13 Si 0.90 18.98 29.59 -169.99 -5.03 13.95 16 14 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 15 H -0.28 -5.70 7.11 56.52 0.40 -5.29 16 16 H -0.26 -5.49 7.11 56.52 0.40 -5.08 16 17 C -0.18 -4.57 9.74 -39.26 -0.38 -4.96 16 18 C -0.15 -3.44 9.82 -39.77 -0.39 -3.84 16 19 C 0.51 7.50 7.16 -10.98 -0.08 7.42 16 20 O -0.46 -8.96 14.24 -18.21 -0.26 -9.22 16 21 N -0.69 -7.20 5.13 -15.78 -0.08 -7.28 16 22 C 0.69 8.47 8.50 -86.92 -0.74 7.73 16 23 O -0.53 -9.38 14.41 -18.47 -0.27 -9.65 16 24 N -0.73 -5.57 5.05 -57.59 -0.29 -5.86 16 25 C 0.16 1.17 3.23 -66.81 -0.22 0.95 16 26 C -0.14 -1.04 6.54 -25.03 -0.16 -1.21 16 27 C -0.12 -0.68 6.91 -24.69 -0.17 -0.85 16 28 C -0.12 -0.54 6.83 -25.07 -0.17 -0.71 16 29 C -0.13 -0.62 6.57 -25.61 -0.17 -0.78 16 30 H 0.08 1.05 7.69 -51.93 -0.40 0.65 16 31 H 0.06 0.43 7.55 -51.93 -0.39 0.03 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.40 7.24 7.79 -40.82 -0.32 6.93 16 34 H 0.09 1.68 6.06 -52.49 -0.32 1.37 16 35 H 0.12 3.09 6.18 -52.48 -0.32 2.77 16 36 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 37 H 0.09 2.18 8.06 -52.49 -0.42 1.75 16 38 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 39 H 0.41 2.34 8.11 -40.82 -0.33 2.01 16 40 H 0.40 1.63 8.32 -40.82 -0.34 1.29 16 41 H 0.09 0.90 7.58 -51.93 -0.39 0.51 16 42 H 0.07 0.56 8.05 -51.93 -0.42 0.14 16 43 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 47 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 48 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 49 H 0.07 0.26 7.61 -51.93 -0.40 -0.13 16 LS Contribution 397.55 15.07 5.99 5.99 Total: -1.00 -34.40 397.55 -11.50 -45.90 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: -7.32 Total: 11.87 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: -4.59 Total: -11.59 kcal Atomic # 7 Polarization: -47.22 SS G_CDS: -0.03 Total: -47.25 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: -0.53 Total: -18.87 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.03 Total: 13.95 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.40 -11.50 -45.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000014095035.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.061 kcal (2) G-P(sol) polarization free energy of solvation -34.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds