Wall clock time and date at job start Tue Mar 31 2020 07:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.47304 * 2 1 4 4 N 1.46498 * 109.47156 * 239.99954 * 2 1 3 5 5 C 1.38860 * 119.99474 * 85.00175 * 4 2 1 6 6 C 1.39565 * 119.84810 * 359.72616 * 5 4 2 7 7 C 1.36333 * 120.16329 * 179.71984 * 6 5 4 8 8 C 1.40891 * 119.83463 * 0.55414 * 7 6 5 9 9 C 1.41141 * 120.15247 * 179.70030 * 8 7 6 10 10 H 1.08001 * 119.99549 * 155.11262 * 9 8 7 11 11 C 1.39863 * 119.99934 * 335.10924 * 9 8 7 12 12 N 1.30900 * 120.00199 * 342.12773 * 11 9 8 13 13 Si 1.86802 * 119.99899 * 162.13475 * 11 9 8 14 14 H 1.48498 * 109.47470 * 94.64689 * 13 11 9 15 15 H 1.48498 * 109.46981 * 214.65190 * 13 11 9 16 16 H 1.48507 * 109.47055 * 334.64692 * 13 11 9 17 17 C 1.40883 * 119.68973 * 359.72039 * 8 7 6 18 18 C 1.36341 * 119.83413 * 359.97438 * 17 8 7 19 19 C 1.50704 * 109.47331 * 120.00149 * 2 1 3 20 20 O 1.21226 * 120.00151 * 120.00040 * 19 2 1 21 21 N 1.34780 * 119.99536 * 300.00258 * 19 2 1 22 22 C 1.34776 * 119.99528 * 179.97438 * 21 19 2 23 23 O 1.21537 * 120.00105 * 359.97438 * 22 21 19 24 24 N 1.34775 * 119.99890 * 180.02562 * 22 21 19 25 25 C 1.46509 * 119.99992 * 179.97438 * 24 22 21 26 26 C 1.54264 * 110.03321 * 87.08939 * 25 24 22 27 27 C 1.54963 * 104.16180 * 95.74984 * 26 25 24 28 28 C 1.54893 * 102.77410 * 37.89096 * 27 26 25 29 29 C 1.53875 * 110.02904 * 204.30727 * 25 24 22 30 30 H 1.08996 * 109.47240 * 59.99615 * 1 2 3 31 31 H 1.08999 * 109.47304 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47297 * 299.99886 * 1 2 3 33 33 H 0.96998 * 120.00430 * 265.00115 * 4 2 1 34 34 H 1.08003 * 119.91137 * 359.97438 * 6 5 4 35 35 H 1.08001 * 120.08595 * 180.27570 * 7 6 5 36 36 H 0.96996 * 120.00454 * 180.02562 * 12 11 9 37 37 H 1.07990 * 120.08238 * 179.97438 * 17 8 7 38 38 H 1.08005 * 119.91327 * 179.97438 * 18 17 8 39 39 H 0.96994 * 120.00402 * 359.97438 * 21 19 2 40 40 H 0.96994 * 120.00040 * 359.97438 * 24 22 21 41 41 H 1.08997 * 110.01309 * 325.69739 * 25 24 22 42 42 H 1.08994 * 110.48958 * 214.40170 * 26 25 24 43 43 H 1.09004 * 110.48483 * 337.04634 * 26 25 24 44 44 H 1.08991 * 110.72716 * 279.57668 * 27 26 25 45 45 H 1.09002 * 110.92579 * 156.29309 * 27 26 25 46 46 H 1.08999 * 110.48993 * 203.40472 * 28 27 26 47 47 H 1.09000 * 110.59937 * 80.81173 * 28 27 26 48 48 H 1.08998 * 110.03276 * 359.94731 * 29 25 24 49 49 H 1.09004 * 110.02953 * 121.38580 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1509 0.0022 -2.3922 6 6 1.8126 1.3549 -2.4526 7 6 1.9457 2.0428 -3.6221 8 6 2.4150 1.3819 -4.7745 9 6 2.5494 2.0859 -5.9904 10 1 3.2504 1.7443 -6.7375 11 6 1.7747 3.2260 -6.2276 12 7 0.7004 3.4476 -5.5132 13 14 2.2729 4.4323 -7.5640 14 1 1.5518 4.1051 -8.8203 15 1 1.9262 5.8124 -7.1393 16 1 3.7369 4.3385 -7.7948 17 6 2.7491 0.0149 -4.7076 18 6 2.6169 -0.6588 -3.5297 19 6 2.0324 -0.7105 1.2305 20 8 2.7293 -1.6961 1.1192 21 7 1.7067 -0.2500 2.4546 22 6 2.1556 -0.8856 3.5550 23 8 2.8536 -1.8743 3.4434 24 7 1.8295 -0.4255 4.7791 25 6 2.3170 -1.1168 5.9753 26 6 3.7097 -0.5800 6.3652 27 6 3.4138 0.4963 7.4401 28 6 2.2440 -0.1301 8.2391 29 6 1.3852 -0.8306 7.1659 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 2.2490 -1.6317 -1.1527 34 1 1.4484 1.8589 -1.5696 35 1 1.6878 3.0906 -3.6663 36 1 0.1629 4.2380 -5.6780 37 1 3.1091 -0.4981 -5.5871 38 1 2.8723 -1.7069 -3.4770 39 1 1.1493 0.5388 2.5436 40 1 1.2721 0.3633 4.8681 41 1 2.3686 -2.1899 5.7910 42 1 4.3228 -1.3782 6.7835 43 1 4.2016 -0.1325 5.5015 44 1 3.1059 1.4323 6.9742 45 1 4.2801 0.6531 8.0828 46 1 1.6672 0.6458 8.7425 47 1 2.6181 -0.8554 8.9616 48 1 0.5709 -0.1766 6.8540 49 1 0.9847 -1.7648 7.5596 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000014095036.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:01 Heat of formation + Delta-G solvation = -45.685178 kcal Electronic energy + Delta-G solvation = -29234.876810 eV Core-core repulsion = 25161.360450 eV Total energy + Delta-G solvation = -4073.516359 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.39109 -39.47973 -38.17527 -37.49476 -35.29362 -34.76447 -33.69636 -33.18880 -30.66377 -29.47459 -29.19484 -28.24506 -27.94866 -25.20711 -24.19386 -22.37688 -21.39236 -21.12142 -20.57864 -20.44286 -19.84461 -18.86542 -17.51812 -17.23335 -16.69882 -16.22508 -15.82219 -15.68499 -15.39063 -15.03096 -14.86477 -14.41110 -14.29513 -13.93155 -13.76325 -13.61937 -13.15395 -12.69010 -12.50742 -12.38135 -12.19593 -12.11736 -12.00851 -11.81715 -11.63526 -11.55903 -11.49336 -11.35494 -11.23633 -11.08300 -11.02890 -10.88958 -10.83150 -10.50319 -10.22760 -9.72781 -9.64216 -9.42055 -9.32262 -9.27891 -8.60641 -7.52020 -6.67006 -6.44228 -4.05706 2.00123 2.11371 2.89011 3.07979 3.13075 3.13715 3.19066 3.32703 3.60718 4.04070 4.06111 4.16546 4.20067 4.42437 4.46367 4.73452 4.92785 4.97312 5.02511 5.13171 5.15579 5.19651 5.22378 5.32801 5.42420 5.55973 5.57468 5.63743 5.79053 5.80927 5.82763 5.85213 5.93102 6.17991 6.20182 6.25258 6.30282 6.34032 6.86194 6.90514 7.17430 7.26413 7.33689 7.51371 7.66578 7.80911 7.92908 8.12649 8.18366 8.25594 8.44599 8.66074 8.76613 9.04044 9.12356 10.34902 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.022773 B = 0.001783 C = 0.001727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.234778 B =15697.327579 C =16209.037584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.150 3.850 3 H 0.104 0.896 4 N -0.743 5.743 5 C 0.091 3.909 6 C -0.165 4.165 7 C -0.125 4.125 8 C 0.076 3.924 9 C -0.466 4.466 10 H 0.073 0.927 11 C 0.075 3.925 12 N -0.807 5.807 13 Si 0.902 3.098 14 H -0.273 1.273 15 H -0.278 1.278 16 H -0.263 1.263 17 C -0.185 4.185 18 C -0.152 4.152 19 C 0.514 3.486 20 O -0.461 6.461 21 N -0.691 5.691 22 C 0.693 3.307 23 O -0.530 6.530 24 N -0.733 5.733 25 C 0.155 3.845 26 C -0.136 4.136 27 C -0.126 4.126 28 C -0.125 4.125 29 C -0.130 4.130 30 H 0.082 0.918 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.395 0.605 34 H 0.089 0.911 35 H 0.119 0.881 36 H 0.276 0.724 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.409 0.591 40 H 0.397 0.603 41 H 0.092 0.908 42 H 0.076 0.924 43 H 0.071 0.929 44 H 0.066 0.934 45 H 0.067 0.933 46 H 0.068 0.932 47 H 0.069 0.931 48 H 0.072 0.928 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.031 -1.185 25.684 25.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.038 3.962 3 H 0.121 0.879 4 N -0.380 5.380 5 C -0.005 4.005 6 C -0.187 4.187 7 C -0.145 4.145 8 C 0.073 3.927 9 C -0.497 4.497 10 H 0.091 0.909 11 C -0.140 4.140 12 N -0.435 5.435 13 Si 0.727 3.273 14 H -0.198 1.198 15 H -0.203 1.203 16 H -0.187 1.187 17 C -0.205 4.205 18 C -0.174 4.174 19 C 0.300 3.700 20 O -0.328 6.328 21 N -0.357 5.357 22 C 0.393 3.607 23 O -0.402 6.402 24 N -0.391 5.391 25 C 0.050 3.950 26 C -0.175 4.175 27 C -0.163 4.163 28 C -0.163 4.163 29 C -0.168 4.168 30 H 0.101 0.899 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.231 0.769 34 H 0.107 0.893 35 H 0.136 0.864 36 H 0.086 0.914 37 H 0.111 0.889 38 H 0.106 0.894 39 H 0.244 0.756 40 H 0.231 0.769 41 H 0.111 0.889 42 H 0.094 0.906 43 H 0.090 0.910 44 H 0.085 0.915 45 H 0.086 0.914 46 H 0.086 0.914 47 H 0.087 0.913 48 H 0.091 0.909 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.175 -2.450 25.564 25.773 hybrid contribution -0.482 1.175 -0.456 1.350 sum -2.657 -1.275 25.108 25.280 Atomic orbital electron populations 1.22321 0.94216 1.02951 1.03046 1.20432 0.94759 0.97348 0.83621 0.87850 1.43640 1.77088 1.11748 1.05494 1.17280 1.06038 0.92034 0.85166 1.20077 1.08030 0.92595 0.98002 1.20906 1.02876 0.99681 0.91037 1.17517 0.91634 0.90521 0.93064 1.19376 1.20097 1.08363 1.01844 0.90913 1.25787 0.93464 0.97963 0.96785 1.69848 1.10794 1.25544 1.37288 0.86415 0.80197 0.79681 0.81036 1.19849 1.20297 1.18662 1.20561 1.09484 0.94565 0.95896 1.19827 1.06910 0.97781 0.92863 1.21414 0.79828 0.84951 0.83825 1.90800 1.32601 1.23745 1.85650 1.44236 1.52678 1.32324 1.06505 1.16203 0.80740 0.83280 0.80478 1.91070 1.38712 1.25177 1.85224 1.45479 1.56384 1.33090 1.04119 1.21541 0.93103 0.97625 0.82712 1.22828 0.96664 0.98852 0.99146 1.22538 0.98262 0.98252 0.97292 1.22378 0.96725 0.99707 0.97445 1.22467 0.98041 1.01547 0.94786 0.89869 0.92069 0.92418 0.76943 0.89345 0.86366 0.91353 0.88924 0.89355 0.75558 0.76885 0.88946 0.90576 0.91005 0.91498 0.91375 0.91368 0.91262 0.90891 0.90509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.94 9.29 37.16 0.35 -1.60 16 2 C 0.15 2.11 2.67 -69.08 -0.18 1.92 16 3 H 0.10 1.39 6.46 -51.93 -0.34 1.05 16 4 N -0.74 -13.37 5.09 -53.16 -0.27 -13.64 16 5 C 0.09 1.95 6.65 -83.69 -0.56 1.40 16 6 C -0.17 -3.66 8.73 -39.77 -0.35 -4.00 16 7 C -0.13 -3.17 8.63 -39.26 -0.34 -3.51 16 8 C 0.08 2.01 5.57 -106.79 -0.59 1.42 16 9 C -0.47 -12.52 9.03 -37.87 -0.34 -12.86 16 10 H 0.07 1.90 7.91 -52.49 -0.41 1.48 16 11 C 0.08 1.91 5.13 -17.34 -0.09 1.82 16 12 N -0.81 -20.92 10.98 55.54 0.61 -20.31 16 13 Si 0.90 18.97 29.60 -169.99 -5.03 13.94 16 14 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 15 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 16 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 17 C -0.18 -4.57 9.74 -39.26 -0.38 -4.95 16 18 C -0.15 -3.45 9.82 -39.77 -0.39 -3.84 16 19 C 0.51 7.43 7.16 -10.98 -0.08 7.35 16 20 O -0.46 -8.88 14.24 -18.20 -0.26 -9.14 16 21 N -0.69 -7.11 5.13 -15.78 -0.08 -7.19 16 22 C 0.69 8.36 8.50 -86.92 -0.74 7.62 16 23 O -0.53 -9.29 14.41 -18.47 -0.27 -9.56 16 24 N -0.73 -5.47 5.04 -57.59 -0.29 -5.76 16 25 C 0.16 1.14 3.23 -66.81 -0.22 0.92 16 26 C -0.14 -1.00 6.54 -25.03 -0.16 -1.17 16 27 C -0.13 -0.66 6.91 -24.70 -0.17 -0.83 16 28 C -0.12 -0.53 6.83 -25.07 -0.17 -0.70 16 29 C -0.13 -0.60 6.57 -25.61 -0.17 -0.77 16 30 H 0.08 1.14 7.63 -51.93 -0.40 0.74 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.45 7.57 -51.93 -0.39 0.05 16 33 H 0.40 7.24 7.79 -40.82 -0.32 6.92 16 34 H 0.09 1.68 6.02 -52.48 -0.32 1.37 16 35 H 0.12 3.09 6.18 -52.49 -0.32 2.77 16 36 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 37 H 0.09 2.18 8.06 -52.49 -0.42 1.75 16 38 H 0.09 1.82 8.06 -52.48 -0.42 1.40 16 39 H 0.41 2.31 8.13 -40.82 -0.33 1.98 16 40 H 0.40 1.62 8.32 -40.82 -0.34 1.28 16 41 H 0.09 0.88 7.58 -51.93 -0.39 0.48 16 42 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.07 0.67 8.04 -51.93 -0.42 0.25 16 44 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 45 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 46 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 47 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 48 H 0.07 0.26 7.61 -51.93 -0.40 -0.13 16 49 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 397.46 15.07 5.99 5.99 Total: -1.00 -34.17 397.46 -11.50 -45.67 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: -7.32 Total: 11.77 kcal Atomic # 6 Polarization: -7.19 SS G_CDS: -4.59 Total: -11.77 kcal Atomic # 7 Polarization: -46.87 SS G_CDS: -0.03 Total: -46.90 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: -0.53 Total: -18.69 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.03 Total: 13.94 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.17 -11.50 -45.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000014095036.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.013 kcal (2) G-P(sol) polarization free energy of solvation -34.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds