Wall clock time and date at job start Tue Mar 31 2020 05:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99976 * 2 1 4 4 H 1.48494 * 109.47260 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47125 * 300.00539 * 3 2 1 6 6 H 1.48507 * 109.46791 * 60.00220 * 3 2 1 7 7 C 1.37872 * 120.00361 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00240 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00013 * 359.97438 * 7 2 1 10 10 N 1.46501 * 109.47298 * 180.02562 * 9 7 2 11 11 C 1.35773 * 124.78645 * 264.97599 * 10 9 7 12 12 C 1.36690 * 109.66187 * 180.02562 * 11 10 9 13 13 C 1.46300 * 126.78134 * 180.02562 * 12 11 10 14 14 C 1.36143 * 120.00126 * 40.65058 * 13 12 11 15 15 S 1.77475 * 127.81193 * 187.39255 * 14 13 12 16 16 C 1.77334 * 94.31863 * 179.79415 * 15 14 13 17 17 S 1.71200 * 126.99323 * 180.20159 * 16 15 14 18 18 N 1.34091 * 106.01881 * 0.31619 * 16 15 14 19 19 C 1.32183 * 119.02531 * 359.60735 * 18 16 15 20 20 O 1.21800 * 121.87254 * 180.29716 * 19 18 16 21 21 C 1.47524 * 106.43676 * 0.25990 * 12 11 10 22 22 C 1.39260 * 133.94258 * 180.52599 * 21 12 11 23 23 C 1.37769 * 119.67603 * 179.58067 * 22 21 12 24 24 C 1.38749 * 120.30248 * 359.69845 * 23 22 21 25 25 C 1.37774 * 120.62804 * 359.97393 * 24 23 22 26 26 C 1.37973 * 124.79411 * 85.00079 * 10 9 7 27 27 H 0.97003 * 120.00094 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.47308 * 60.00157 * 9 7 2 29 29 H 1.08999 * 109.47500 * 300.00486 * 9 7 2 30 30 H 1.07997 * 125.16644 * 0.04056 * 11 10 9 31 31 H 1.08000 * 119.99854 * 220.64880 * 13 12 11 32 32 H 0.97000 * 120.48686 * 179.87790 * 18 16 15 33 33 H 1.07997 * 120.16228 * 359.28308 * 22 21 12 34 34 H 1.08006 * 119.85308 * 179.66828 * 23 22 21 35 35 H 1.08001 * 119.68915 * 179.97438 * 24 23 22 36 36 H 1.07996 * 120.03341 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 7 2.2032 -3.6126 -0.0005 11 6 2.6324 -4.2648 -1.1113 12 6 3.5132 -5.2478 -0.7560 13 6 4.2016 -6.1741 -1.6552 14 6 4.6986 -5.7282 -2.8416 15 16 5.4013 -6.6900 -4.1572 16 6 5.7221 -5.2862 -5.1922 17 16 6.4285 -5.2961 -6.7517 18 7 5.3014 -4.2151 -4.5040 19 6 4.7712 -4.3904 -3.3058 20 8 4.3674 -3.4551 -2.6382 21 6 3.6281 -5.1940 0.7138 22 6 4.3610 -5.9153 1.6528 23 6 4.2490 -5.6047 2.9904 24 6 3.4158 -4.5746 3.4025 25 6 2.6902 -3.8484 2.4835 26 6 2.7899 -4.1468 1.1282 27 1 -0.4850 0.8401 0.0004 28 1 0.6242 -2.5567 -0.8903 29 1 0.6248 -2.5571 0.8896 30 1 2.3247 -4.0408 -2.1220 31 1 4.3155 -7.2116 -1.3777 32 1 5.3812 -3.3251 -4.8814 33 1 5.0103 -6.7175 1.3346 34 1 4.8120 -6.1658 3.7216 35 1 3.3352 -4.3398 4.4535 36 1 2.0443 -3.0489 2.8150 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000015565970.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:09 Heat of formation + Delta-G solvation = 81.935790 kcal Electronic energy + Delta-G solvation = -24130.937297 eV Core-core repulsion = 20606.387368 eV Total energy + Delta-G solvation = -3524.549930 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 344.039 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.56598 -40.89769 -37.06914 -36.69176 -34.67496 -33.22079 -31.37486 -29.87195 -28.61890 -27.50261 -26.78761 -25.25745 -23.34656 -22.37097 -21.30700 -20.60779 -19.56740 -19.03171 -18.04423 -16.92992 -16.60061 -16.36311 -16.04741 -15.98131 -15.28599 -14.93181 -14.81072 -14.40493 -14.11047 -13.65729 -13.47364 -12.99074 -12.79086 -12.58143 -12.36984 -12.19830 -11.83828 -11.62287 -11.57192 -11.44309 -11.19977 -10.99414 -10.89963 -10.64586 -10.38557 -10.33149 -9.83256 -9.40050 -9.12376 -8.81299 -8.17999 -8.13264 -7.85666 -7.11866 -6.42101 -4.51629 -0.55605 0.44777 0.69373 1.31457 1.47644 1.50566 1.95556 2.54565 2.63010 3.08435 3.10072 3.19064 3.25064 3.44491 4.01811 4.15393 4.20422 4.76145 4.87868 4.93730 5.07276 5.24559 5.33146 5.37803 5.53934 5.72988 5.79901 5.87428 5.98905 6.02528 6.17061 6.27291 6.47839 6.70390 6.72247 6.83160 6.94185 7.14339 7.32804 7.49502 7.63684 7.67629 7.72130 8.56059 9.17111 10.64634 Molecular weight = 344.04amu Principal moments of inertia in cm(-1) A = 0.009433 B = 0.003920 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2967.535900 B = 7140.922171 C = 9499.551412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.068 3.932 3 Si 0.905 3.095 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.541 4.541 8 H 0.068 0.932 9 C 0.229 3.771 10 N -0.429 5.429 11 C 0.199 3.801 12 C -0.259 4.259 13 C 0.194 3.806 14 C -0.335 4.335 15 S 0.112 5.888 16 C 0.286 3.714 17 S -0.420 6.420 18 N -0.616 5.616 19 C 0.535 3.465 20 O -0.447 6.447 21 C -0.071 4.071 22 C -0.095 4.095 23 C -0.138 4.138 24 C -0.121 4.121 25 C -0.096 4.096 26 C 0.094 3.906 27 H 0.269 0.731 28 H 0.051 0.949 29 H 0.050 0.950 30 H 0.168 0.832 31 H 0.147 0.853 32 H 0.430 0.570 33 H 0.116 0.884 34 H 0.118 0.882 35 H 0.121 0.879 36 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.577 -13.873 -0.233 15.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.136 4.136 3 Si 0.732 3.268 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.579 4.579 8 H 0.086 0.914 9 C 0.112 3.888 10 N -0.102 5.102 11 C 0.057 3.943 12 C -0.268 4.268 13 C 0.167 3.833 14 C -0.453 4.453 15 S 0.350 5.650 16 C -0.069 4.069 17 S -0.288 6.288 18 N -0.260 5.260 19 C 0.323 3.677 20 O -0.321 6.321 21 C -0.075 4.075 22 C -0.113 4.113 23 C -0.157 4.157 24 C -0.140 4.140 25 C -0.116 4.116 26 C -0.011 4.011 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.186 0.814 31 H 0.164 0.836 32 H 0.273 0.727 33 H 0.134 0.866 34 H 0.136 0.864 35 H 0.139 0.861 36 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 6.538 -14.234 -0.849 15.687 hybrid contribution -0.146 2.888 0.640 2.962 sum 6.392 -11.346 -0.209 13.024 Atomic orbital electron populations 1.69916 1.06080 1.27820 1.48903 1.24920 0.94949 0.99589 0.94108 0.86309 0.80181 0.82374 0.77970 1.19446 1.20528 1.20512 1.21321 0.93908 0.89386 1.53314 0.91374 1.19937 0.86946 0.81918 1.00031 1.44950 1.34844 1.26700 1.03682 1.22280 0.92608 0.87544 0.91841 1.18511 1.11133 1.05938 0.91206 1.21269 0.78907 0.97565 0.85580 1.22513 1.22706 0.95346 1.04726 1.85868 1.65211 1.06594 1.07362 1.28406 0.86836 0.92554 0.99085 1.93074 1.45421 1.91377 0.98913 1.43774 1.52974 1.11864 1.17377 1.16858 0.79004 0.91089 0.80711 1.91144 1.43362 1.44203 1.53389 1.18848 0.99539 0.97915 0.91192 1.20272 0.99432 0.99565 0.92049 1.20809 1.00665 0.99006 0.95214 1.20733 0.97882 0.96636 0.98743 1.20261 1.01217 1.00647 0.89491 1.18281 0.97770 0.96016 0.88999 0.92154 0.93084 0.93168 0.81445 0.83550 0.72740 0.86566 0.86405 0.86084 0.85582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.89 13.29 55.43 0.74 -23.16 16 2 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 20.55 29.54 -169.99 -5.02 15.53 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.54 -13.98 9.39 -34.44 -0.32 -14.31 16 8 H 0.07 1.86 7.81 -52.48 -0.41 1.45 16 9 C 0.23 5.25 5.71 -5.19 -0.03 5.22 16 10 N -0.43 -8.55 2.73 -115.32 -0.32 -8.86 16 11 C 0.20 3.48 8.57 -16.37 -0.14 3.34 16 12 C -0.26 -3.93 5.52 -103.43 -0.57 -4.50 16 13 C 0.19 2.18 10.22 -37.10 -0.38 1.80 16 14 C -0.34 -3.98 6.33 -38.98 -0.25 -4.23 16 15 S 0.11 1.15 23.20 -107.50 -2.49 -1.34 16 16 C 0.29 3.49 8.05 53.75 0.43 3.92 16 17 S -0.42 -5.97 31.19 -107.50 -3.35 -9.32 16 18 N -0.62 -7.55 5.17 -14.61 -0.08 -7.63 16 19 C 0.54 7.50 7.56 -16.04 -0.12 7.38 16 20 O -0.45 -7.94 13.55 5.10 0.07 -7.87 16 21 C -0.07 -1.15 6.36 -104.92 -0.67 -1.82 16 22 C -0.09 -1.27 10.09 -39.37 -0.40 -1.67 16 23 C -0.14 -1.77 10.03 -39.56 -0.40 -2.16 16 24 C -0.12 -1.69 10.01 -39.56 -0.40 -2.08 16 25 C -0.10 -1.65 9.97 -39.42 -0.39 -2.04 16 26 C 0.09 1.75 6.79 -83.96 -0.57 1.18 16 27 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 28 H 0.05 1.20 8.11 -51.93 -0.42 0.78 16 29 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.17 2.80 7.06 -52.49 -0.37 2.43 16 31 H 0.15 1.09 8.06 -52.49 -0.42 0.67 16 32 H 0.43 4.79 8.92 -40.82 -0.36 4.42 16 33 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 34 H 0.12 1.16 8.06 -52.48 -0.42 0.73 16 35 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16 36 H 0.13 2.20 8.06 -52.49 -0.42 1.78 16 LS Contribution 348.67 15.07 5.25 5.25 Total: -1.00 -29.22 348.67 -12.73 -41.95 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -3.24 Total: 3.73 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: -4.30 Total: -8.28 kcal Atomic # 7 Polarization: -39.99 SS G_CDS: 0.35 Total: -39.65 kcal Atomic # 8 Polarization: -7.94 SS G_CDS: 0.07 Total: -7.87 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Atomic # 16 Polarization: -4.82 SS G_CDS: -5.85 Total: -10.66 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -29.22 -12.73 -41.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000015565970.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.884 kcal (2) G-P(sol) polarization free energy of solvation -29.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds