Wall clock time and date at job start Tue Mar 31 2020 06:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00189 * 2 1 4 4 H 1.48495 * 109.47429 * 269.99936 * 3 2 1 5 5 H 1.48507 * 109.47049 * 30.00307 * 3 2 1 6 6 H 1.48498 * 109.46988 * 150.00012 * 3 2 1 7 7 C 1.37878 * 119.99384 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00560 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99467 * 179.97438 * 7 2 1 10 10 N 1.46506 * 109.46998 * 179.97438 * 9 7 2 11 11 C 1.34773 * 119.99766 * 90.00202 * 10 9 7 12 12 O 1.21283 * 120.00623 * 5.20896 * 11 10 9 13 13 C 1.50698 * 119.99489 * 185.20888 * 11 10 9 14 14 S 1.81005 * 109.46994 * 184.03674 * 13 11 10 15 15 C 1.76199 * 100.00189 * 179.97438 * 14 13 11 16 16 N 1.32561 * 119.19252 * 0.02562 * 15 14 13 17 17 C 1.32408 * 120.87915 * 179.97438 * 16 15 14 18 18 C 1.38257 * 119.27648 * 359.97438 * 17 16 15 19 19 C 1.39413 * 118.51701 * 359.97438 * 18 17 16 20 20 O 1.35520 * 120.46085 * 180.02562 * 19 18 17 21 21 N 1.32522 * 119.19656 * 179.72951 * 15 14 13 22 22 C 1.39931 * 119.99787 * 270.00140 * 10 9 7 23 23 C 1.38861 * 120.07072 * 112.26358 * 22 10 9 24 24 C 1.38115 * 119.93133 * 179.74401 * 23 22 10 25 25 C 1.38282 * 120.06563 * 0.52723 * 24 23 22 26 26 C 1.38285 * 120.14224 * 359.75113 * 25 24 23 27 27 C 1.38106 * 120.07142 * 359.97009 * 26 25 24 28 28 H 0.97004 * 120.00174 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.47178 * 59.99887 * 9 7 2 30 30 H 1.09001 * 109.47677 * 299.99791 * 9 7 2 31 31 H 1.08998 * 109.47525 * 64.04036 * 13 11 10 32 32 H 1.08999 * 109.47697 * 304.03486 * 13 11 10 33 33 H 1.08005 * 120.36106 * 179.97438 * 17 16 15 34 34 H 1.08000 * 120.74423 * 180.02562 * 18 17 16 35 35 H 0.96697 * 113.99828 * 90.00710 * 20 19 18 36 36 H 1.08002 * 120.03660 * 0.02562 * 23 22 10 37 37 H 1.07996 * 119.96598 * 180.27312 * 24 23 22 38 38 H 1.07999 * 119.92510 * 179.71800 * 25 24 23 39 39 H 1.08002 * 119.96247 * 180.02562 * 26 25 24 40 40 H 1.07995 * 120.04015 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 -0.0011 10 7 3.9997 -2.5754 -0.0010 11 6 4.2239 -3.2110 -1.1681 12 8 4.1126 -2.6113 -2.2164 13 6 4.6129 -4.6669 -1.1706 14 16 4.9579 -5.1963 -2.8668 15 6 5.3751 -6.8843 -2.5816 16 7 5.3521 -7.3556 -1.3428 17 6 5.6591 -8.6187 -1.0905 18 6 6.0069 -9.4520 -2.1373 19 6 6.0210 -8.9277 -3.4290 20 8 6.3555 -9.7096 -4.4842 21 7 5.6985 -7.6531 -3.6114 22 6 4.2333 -3.2348 1.2109 23 6 3.4323 -4.3051 1.5864 24 6 3.6688 -4.9572 2.7807 25 6 4.6951 -4.5383 3.6074 26 6 5.4910 -3.4691 3.2390 27 6 5.2633 -2.8165 2.0434 28 1 -0.4850 0.8401 0.0004 29 1 3.8751 -0.6805 0.8888 30 1 3.8745 -0.6802 -0.8911 31 1 3.7956 -5.2621 -0.7634 32 1 5.5039 -4.8060 -0.5583 33 1 5.6380 -8.9938 -0.0779 34 1 6.2612 -10.4864 -1.9586 35 1 5.6047 -10.1627 -4.8916 36 1 2.6280 -4.6303 0.9431 37 1 3.0489 -5.7925 3.0712 38 1 4.8751 -5.0469 4.5429 39 1 6.2920 -3.1446 3.8867 40 1 5.8854 -1.9818 1.7560 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000016035286.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:44 Heat of formation + Delta-G solvation = 20.759193 kcal Electronic energy + Delta-G solvation = -26658.950078 eV Core-core repulsion = 22759.401645 eV Total energy + Delta-G solvation = -3899.548433 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.20859 -40.08818 -38.25800 -37.93831 -35.09908 -33.56989 -32.72321 -31.84440 -30.93300 -30.21159 -29.46095 -27.35597 -25.00579 -24.43770 -22.81400 -22.59264 -22.04926 -19.87424 -19.26340 -18.35793 -17.45283 -17.02227 -16.84627 -16.43651 -16.13210 -15.75163 -15.64445 -15.34624 -14.71737 -14.47801 -14.33100 -14.18241 -14.07682 -13.73844 -13.24072 -13.20560 -12.62911 -12.50051 -12.42811 -12.36368 -11.86389 -11.44209 -11.18915 -11.10928 -11.00877 -10.90049 -10.61371 -10.48181 -10.29192 -10.27198 -9.73270 -9.62707 -9.59120 -8.78131 -8.73681 -8.63110 -7.90575 -7.78434 -6.14356 -4.14391 0.41133 0.69695 1.02662 1.45523 1.56419 1.99799 2.95779 3.02389 3.25759 3.31176 3.33393 3.35602 3.54682 3.93428 4.04763 4.34496 4.35758 4.64430 4.70198 4.79930 5.05121 5.09944 5.17120 5.17594 5.18876 5.27102 5.45983 5.59478 5.73082 5.77096 5.90523 6.17103 6.46966 6.56395 6.58876 6.64867 6.66283 6.82454 6.96986 6.97261 7.18547 7.49818 7.56541 7.97529 8.35503 8.59229 8.87365 9.44098 10.98691 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.012701 B = 0.003260 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.996180 B = 8586.194871 C =10072.767243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.076 3.924 3 Si 0.874 3.126 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.265 1.265 7 C -0.532 4.532 8 H 0.076 0.924 9 C 0.218 3.782 10 N -0.547 5.547 11 C 0.534 3.466 12 O -0.514 6.514 13 C -0.149 4.149 14 S 0.100 5.900 15 C 0.307 3.693 16 N -0.532 5.532 17 C 0.179 3.821 18 C -0.260 4.260 19 C 0.375 3.625 20 O -0.476 6.476 21 N -0.525 5.525 22 C 0.155 3.845 23 C -0.115 4.115 24 C -0.106 4.106 25 C -0.130 4.130 26 C -0.110 4.110 27 C -0.124 4.124 28 H 0.266 0.734 29 H 0.036 0.964 30 H 0.044 0.956 31 H 0.125 0.875 32 H 0.120 0.880 33 H 0.176 0.824 34 H 0.152 0.848 35 H 0.409 0.591 36 H 0.125 0.875 37 H 0.122 0.878 38 H 0.119 0.881 39 H 0.122 0.878 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.717 -19.565 3.053 23.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.127 4.127 3 Si 0.700 3.300 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.190 1.190 7 C -0.571 4.571 8 H 0.094 0.906 9 C 0.099 3.901 10 N -0.275 5.275 11 C 0.320 3.680 12 O -0.389 6.389 13 C -0.300 4.300 14 S 0.336 5.664 15 C -0.068 4.068 16 N -0.251 5.251 17 C 0.011 3.989 18 C -0.288 4.288 19 C 0.184 3.816 20 O -0.284 6.284 21 N -0.252 5.252 22 C 0.063 3.937 23 C -0.135 4.135 24 C -0.125 4.125 25 C -0.148 4.148 26 C -0.129 4.129 27 C -0.144 4.144 28 H 0.076 0.924 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.143 0.857 32 H 0.138 0.862 33 H 0.193 0.807 34 H 0.170 0.830 35 H 0.269 0.731 36 H 0.143 0.857 37 H 0.140 0.860 38 H 0.137 0.863 39 H 0.140 0.860 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 12.736 -17.239 1.331 21.475 hybrid contribution 0.054 -1.078 1.296 1.687 sum 12.791 -18.317 2.626 22.495 Atomic orbital electron populations 1.69883 1.06163 1.27121 1.49953 1.24805 0.94770 0.98879 0.94246 0.86883 0.80239 0.83823 0.79007 1.19700 1.20908 1.19011 1.21226 0.88704 0.95065 1.52086 0.90558 1.19880 0.96118 0.76056 0.98061 1.45469 1.63662 1.15942 1.02423 1.19426 0.77770 0.86676 0.84138 1.90737 1.51025 1.67003 1.30155 1.23916 1.08093 0.98643 0.99396 1.86772 1.80044 0.92199 1.07390 1.25459 0.93675 1.01791 0.85837 1.68936 1.19065 1.15968 1.21179 1.23173 0.87944 0.87856 0.99878 1.22804 1.08550 1.03716 0.93717 1.19419 0.88363 0.86952 0.86889 1.84714 1.36618 1.60857 1.46189 1.67985 1.15805 1.05828 1.35627 1.17702 0.94361 0.93740 0.87878 1.21370 0.98204 0.96693 0.97217 1.20977 0.97759 0.99762 0.94017 1.21084 0.96430 0.97635 0.99638 1.20951 0.99777 0.96110 0.96054 1.21260 0.97218 1.00779 0.95153 0.92419 0.94660 0.93771 0.85686 0.86175 0.80734 0.82994 0.73138 0.85717 0.85969 0.86287 0.86029 0.85829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.20 13.96 55.43 0.77 -26.43 16 2 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 3 Si 0.87 21.27 27.47 -169.99 -4.67 16.60 16 4 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 5 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.27 -6.07 6.54 56.52 0.37 -5.70 16 7 C -0.53 -15.03 9.94 -34.44 -0.34 -15.38 16 8 H 0.08 2.35 8.06 -52.49 -0.42 1.93 16 9 C 0.22 5.24 4.22 -5.19 -0.02 5.22 16 10 N -0.55 -11.21 2.51 -114.73 -0.29 -11.50 16 11 C 0.53 10.74 7.59 -10.99 -0.08 10.65 16 12 O -0.51 -12.12 15.42 5.55 0.09 -12.03 16 13 C -0.15 -2.33 3.82 36.00 0.14 -2.19 16 14 S 0.10 1.58 21.39 -107.50 -2.30 -0.72 16 15 C 0.31 4.35 7.85 -90.87 -0.71 3.64 16 16 N -0.53 -6.55 9.13 -13.51 -0.12 -6.68 16 17 C 0.18 1.57 11.29 -17.30 -0.20 1.38 16 18 C -0.26 -2.10 10.12 -39.14 -0.40 -2.49 16 19 C 0.38 4.00 7.83 -16.72 -0.13 3.87 16 20 O -0.48 -4.01 13.57 -18.25 -0.25 -4.25 16 21 N -0.52 -7.30 10.42 -13.50 -0.14 -7.44 16 22 C 0.15 2.66 4.45 -83.69 -0.37 2.29 16 23 C -0.12 -1.78 8.43 -39.40 -0.33 -2.11 16 24 C -0.11 -1.33 10.04 -39.61 -0.40 -1.73 16 25 C -0.13 -1.48 10.04 -39.55 -0.40 -1.88 16 26 C -0.11 -1.34 10.04 -39.61 -0.40 -1.74 16 27 C -0.12 -1.85 9.67 -39.39 -0.38 -2.23 16 28 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 29 H 0.04 0.82 6.90 -51.93 -0.36 0.46 16 30 H 0.04 1.11 6.79 -51.93 -0.35 0.76 16 31 H 0.13 1.85 6.81 -51.92 -0.35 1.49 16 32 H 0.12 1.70 7.88 -51.92 -0.41 1.29 16 33 H 0.18 0.87 8.06 -52.48 -0.42 0.45 16 34 H 0.15 0.73 8.06 -52.49 -0.42 0.31 16 35 H 0.41 1.27 9.06 45.56 0.41 1.68 16 36 H 0.12 1.98 7.56 -52.49 -0.40 1.58 16 37 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 38 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 39 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 40 H 0.12 1.76 8.06 -52.49 -0.42 1.33 16 LS Contribution 365.13 15.07 5.50 5.50 Total: -1.00 -36.09 365.13 -9.11 -45.20 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -3.58 Total: 2.35 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: -4.12 Total: -0.61 kcal Atomic # 7 Polarization: -52.26 SS G_CDS: 0.22 Total: -52.04 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: -0.16 Total: -16.29 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.67 Total: 16.60 kcal Atomic # 16 Polarization: 1.58 SS G_CDS: -2.30 Total: -0.72 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -36.09 -9.11 -45.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016035286.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.964 kcal (2) G-P(sol) polarization free energy of solvation -36.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds