Wall clock time and date at job start Tue Mar 31 2020 07:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.52991 * 109.47093 * 292.65854 * 3 2 1 5 5 N 1.46902 * 109.47342 * 183.34178 * 4 3 2 6 6 C 1.46895 * 111.00205 * 138.10171 * 5 4 3 7 7 C 1.52995 * 109.47256 * 287.71279 * 6 5 4 8 8 C 1.47203 * 109.47023 * 185.21277 * 7 6 5 9 9 N 7.27018 * 129.83872 * 245.52132 * 2 1 3 10 10 C 1.46903 * 111.00076 * 262.06246 * 5 4 3 11 11 H 1.08997 * 109.47004 * 183.88954 * 10 5 4 12 12 C 1.52998 * 109.47597 * 63.88779 * 10 5 4 13 13 C 1.50689 * 109.47334 * 64.98748 * 12 10 5 14 14 C 1.34666 * 125.99320 * 124.71475 * 13 12 10 15 15 N 1.36886 * 106.82165 * 179.84949 * 14 13 12 16 16 C 1.46504 * 126.39575 * 180.11821 * 15 14 13 17 17 C 1.50697 * 109.47313 * 270.32760 * 16 15 14 18 18 H 1.08003 * 120.00070 * 359.97438 * 17 16 15 19 19 C 1.37875 * 119.99789 * 180.02562 * 17 16 15 20 20 N 1.31516 * 120.00347 * 359.97438 * 19 17 16 21 21 Si 1.86809 * 119.99715 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47019 * 59.99964 * 21 19 17 23 23 H 1.48500 * 109.46631 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.46998 * 300.00036 * 21 19 17 25 25 C 1.35034 * 107.20292 * 0.42013 * 15 14 13 26 26 N 1.30503 * 108.70162 * 359.73389 * 25 15 14 27 27 C 1.50709 * 109.46612 * 303.88691 * 10 5 4 28 28 O 1.20824 * 120.00244 * 0.50971 * 27 10 5 29 29 O 1.34234 * 119.99612 * 180.51370 * 27 10 5 30 30 H 1.09002 * 109.46530 * 172.66011 * 3 2 1 31 31 H 1.08998 * 109.47276 * 52.66364 * 3 2 1 32 32 H 1.09007 * 109.47268 * 63.34260 * 4 3 2 33 33 H 1.09000 * 109.47469 * 303.34074 * 4 3 2 34 34 H 1.09004 * 109.47237 * 47.71697 * 6 5 4 35 35 H 1.09001 * 109.46834 * 167.71013 * 6 5 4 36 36 H 1.09007 * 109.47218 * 305.21169 * 7 6 5 37 37 H 1.08995 * 109.47471 * 65.21019 * 7 6 5 38 38 H 1.09001 * 109.47323 * 184.99464 * 12 10 5 39 39 H 1.09005 * 109.46539 * 304.98890 * 12 10 5 40 40 H 1.08005 * 126.58711 * 359.97075 * 14 13 12 41 41 H 1.08994 * 109.47057 * 30.32949 * 16 15 14 42 42 H 1.09001 * 109.46424 * 150.32670 * 16 15 14 43 43 H 0.96992 * 119.99864 * 180.02562 * 20 19 17 44 44 H 1.08004 * 125.65071 * 179.76349 * 25 15 14 45 45 H 0.96700 * 116.99784 * 179.97438 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1182 -0.5548 1.3311 5 7 4.5850 -0.4800 1.3630 6 6 5.0607 -0.0278 2.6772 7 6 4.7537 1.4615 2.8459 8 6 5.3400 1.9435 4.1072 9 7 5.7935 2.3131 5.0806 10 6 5.1860 -1.7706 1.0010 11 1 6.2697 -1.7071 1.0993 12 6 4.8245 -2.1139 -0.4455 13 6 5.4537 -1.1068 -1.3731 14 6 6.2685 -1.3853 -2.4085 15 7 6.6058 -0.1883 -2.9804 16 6 7.4756 0.0051 -4.1433 17 6 8.9028 0.1559 -3.6835 18 1 9.1384 0.1125 -2.6304 19 6 9.9077 0.3504 -4.6073 20 7 9.6208 0.4038 -5.8897 21 14 11.6768 0.5380 -4.0374 22 1 12.0936 -0.6853 -3.3060 23 1 12.5582 0.7352 -5.2161 24 1 11.7847 1.7139 -3.1370 25 6 5.9925 0.7814 -2.2683 26 7 5.3052 0.2247 -1.3087 27 6 4.6603 -2.8444 1.9186 28 8 3.8596 -2.5650 2.7792 29 8 5.0819 -4.1113 1.7798 30 1 2.9708 1.0201 -0.1313 31 1 2.9717 -0.6224 -0.8171 32 1 2.8051 -1.5937 1.4352 33 1 2.7066 0.0328 2.1517 34 1 4.5564 -0.5937 3.4605 35 1 6.1365 -0.1875 2.7488 36 1 5.1807 2.0174 2.0111 37 1 3.6742 1.6100 2.8669 38 1 5.1948 -3.1105 -0.6859 39 1 3.7412 -2.0904 -0.5645 40 1 6.5919 -2.3652 -2.7277 41 1 7.3960 -0.8580 -4.8040 42 1 7.1700 0.9032 -4.6801 43 1 10.3278 0.5402 -6.5395 44 1 6.0593 1.8420 -2.4612 45 1 4.7168 -4.7649 2.3918 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000017302410.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:34 Heat of formation + Delta-G solvation = 35.490145 kcal Electronic energy + Delta-G solvation = -30137.524238 eV Core-core repulsion = 25963.987562 eV Total energy + Delta-G solvation = -4173.536677 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.46477 -40.89957 -38.38837 -36.84951 -36.52266 -36.06362 -34.32198 -33.22133 -32.15033 -31.80187 -29.99553 -28.18883 -27.13322 -24.86114 -24.33868 -23.13123 -22.57765 -20.62198 -20.24826 -19.32486 -18.40490 -17.81647 -17.38762 -17.00949 -16.87973 -16.42711 -16.00735 -15.58808 -15.47746 -14.89142 -14.58082 -14.31787 -14.14033 -13.98451 -13.64261 -13.47484 -13.35939 -13.21262 -12.97171 -12.75128 -12.64732 -12.41612 -12.31798 -12.19503 -12.05222 -11.90377 -11.75566 -11.64811 -11.44550 -11.35488 -11.16563 -11.06640 -10.94210 -10.88009 -10.57844 -10.38978 -9.99791 -9.18836 -8.75194 -8.54871 -8.52831 -7.65146 -6.38990 -4.47590 1.88728 2.54056 2.67772 2.74230 2.77829 2.83611 2.95600 3.14841 3.20375 3.23457 3.34961 3.75735 3.94192 3.99860 4.21863 4.32404 4.69346 4.75307 4.83171 4.88604 4.94249 4.96672 5.06642 5.16095 5.27903 5.34946 5.46448 5.48367 5.64335 5.68436 5.75707 5.83790 5.85831 5.94553 6.18602 6.26944 6.37226 6.50998 6.68553 6.73348 6.86543 7.33011 7.43408 7.50668 7.56392 7.60363 7.61739 7.74904 8.09878 8.60129 8.86385 9.21200 10.69112 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.009432 B = 0.003039 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2968.023710 B = 9211.785892 C = 9854.139080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C 0.211 3.789 3 C -0.026 4.026 4 C 0.053 3.947 5 N -0.472 5.472 6 C 0.050 3.950 7 C -0.023 4.023 8 C 0.212 3.788 9 N -0.445 5.445 10 C 0.106 3.894 11 H 0.127 0.873 12 C -0.016 4.016 13 C -0.028 4.028 14 C -0.040 4.040 15 N -0.424 5.424 16 C 0.232 3.768 17 C -0.544 4.544 18 H 0.066 0.934 19 C 0.067 3.933 20 N -0.890 5.890 21 Si 0.905 3.095 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.273 1.273 25 C 0.170 3.830 26 N -0.472 5.472 27 C 0.449 3.551 28 O -0.518 6.518 29 O -0.513 6.513 30 H 0.126 0.874 31 H 0.119 0.881 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.061 0.939 35 H 0.082 0.918 36 H 0.127 0.873 37 H 0.107 0.893 38 H 0.088 0.912 39 H 0.076 0.924 40 H 0.158 0.842 41 H 0.046 0.954 42 H 0.049 0.951 43 H 0.269 0.731 44 H 0.191 0.809 45 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.955 -5.607 11.022 15.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.134 5.134 2 C -0.106 4.106 3 C -0.066 4.066 4 C -0.076 4.076 5 N -0.193 5.193 6 C -0.079 4.079 7 C -0.064 4.064 8 C -0.106 4.106 9 N -0.122 5.122 10 C -0.005 4.005 11 H 0.145 0.855 12 C -0.055 4.055 13 C -0.159 4.159 14 C -0.178 4.178 15 N -0.101 5.101 16 C 0.112 3.888 17 C -0.582 4.582 18 H 0.084 0.916 19 C -0.137 4.137 20 N -0.527 5.527 21 Si 0.732 3.268 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.199 1.199 25 C -0.113 4.113 26 N -0.190 5.190 27 C 0.290 3.710 28 O -0.407 6.407 29 O -0.323 6.323 30 H 0.144 0.856 31 H 0.137 0.863 32 H 0.085 0.915 33 H 0.095 0.905 34 H 0.079 0.921 35 H 0.101 0.899 36 H 0.145 0.855 37 H 0.125 0.875 38 H 0.107 0.893 39 H 0.094 0.906 40 H 0.175 0.825 41 H 0.064 0.936 42 H 0.067 0.933 43 H 0.079 0.921 44 H 0.207 0.793 45 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -10.150 -3.829 12.300 16.400 hybrid contribution 1.500 -1.450 0.076 2.088 sum -8.649 -5.279 12.376 15.996 Atomic orbital electron populations 1.81195 1.13401 1.09742 1.09034 1.29636 0.95658 0.92551 0.92779 1.19625 0.79343 1.07167 1.00454 1.22216 0.87356 1.01863 0.96151 1.62120 1.06711 1.23011 1.27474 1.22170 1.01571 0.93544 0.90617 1.19274 1.01721 0.96729 0.88657 1.29193 0.93361 0.93427 0.94583 1.81217 1.09659 1.09135 1.12186 1.21837 1.01851 0.83119 0.93737 0.85544 1.19835 1.00520 0.96949 0.88193 1.19769 1.05035 0.92050 0.99061 1.22332 1.04640 0.91255 0.99596 1.46038 1.33810 1.05753 1.24484 1.19753 0.88562 0.99193 0.81262 1.21259 0.90620 1.52187 0.94114 0.91615 1.24941 0.99786 0.94315 0.94644 1.69901 1.34025 1.48093 1.00695 0.86430 0.83092 0.79039 0.78243 1.19934 1.20995 1.19868 1.24728 0.97973 0.96211 0.92395 1.70116 1.22840 1.05778 1.20309 1.25480 0.78441 0.83467 0.83652 1.90700 1.32758 1.82307 1.34909 1.84633 1.67687 1.19743 1.60242 0.85610 0.86315 0.91507 0.90499 0.92067 0.89947 0.85468 0.87460 0.89313 0.90560 0.82481 0.93600 0.93267 0.92108 0.79268 0.73655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -6.25 18.54 42.15 0.78 -5.47 16 2 C 0.21 2.27 15.43 -20.76 -0.32 1.95 16 3 C -0.03 -0.21 4.67 -29.52 -0.14 -0.35 16 4 C 0.05 0.42 3.42 -3.83 -0.01 0.41 16 5 N -0.47 -3.79 3.32 -228.04 -0.76 -4.55 16 6 C 0.05 0.38 4.27 -3.83 -0.02 0.36 16 7 C -0.02 -0.15 5.69 -29.52 -0.17 -0.32 16 8 C 0.21 2.08 15.43 -20.77 -0.32 1.76 16 9 N -0.44 -5.83 18.54 42.14 0.78 -5.05 16 10 C 0.11 0.90 2.21 -68.86 -0.15 0.75 16 11 H 0.13 1.12 7.91 -51.93 -0.41 0.71 16 12 C -0.02 -0.15 4.71 -27.89 -0.13 -0.28 16 13 C -0.03 -0.36 5.73 -82.86 -0.47 -0.83 16 14 C -0.04 -0.61 11.46 -16.56 -0.19 -0.80 16 15 N -0.42 -7.50 2.73 -119.87 -0.33 -7.82 16 16 C 0.23 4.97 5.90 -5.19 -0.03 4.94 16 17 C -0.54 -13.16 9.39 -34.44 -0.32 -13.48 16 18 H 0.07 1.62 7.81 -52.48 -0.41 1.21 16 19 C 0.07 1.68 5.46 -17.82 -0.10 1.58 16 20 N -0.89 -23.25 13.29 55.43 0.74 -22.51 16 21 Si 0.91 19.47 29.54 -169.99 -5.02 14.45 16 22 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 23 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 24 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 25 C 0.17 2.64 12.56 -90.38 -1.14 1.50 16 26 N -0.47 -6.27 8.94 -10.88 -0.10 -6.37 16 27 C 0.45 3.79 6.69 36.01 0.24 4.03 16 28 O -0.52 -5.36 12.95 -18.75 -0.24 -5.60 16 29 O -0.51 -3.52 13.25 -39.27 -0.52 -4.04 16 30 H 0.13 0.99 8.12 -51.93 -0.42 0.57 16 31 H 0.12 1.09 4.60 -51.93 -0.24 0.85 16 32 H 0.07 0.60 5.18 -51.93 -0.27 0.34 16 33 H 0.08 0.55 6.39 -51.93 -0.33 0.22 16 34 H 0.06 0.52 6.40 -51.93 -0.33 0.19 16 35 H 0.08 0.64 7.83 -51.93 -0.41 0.23 16 36 H 0.13 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.11 0.52 6.92 -51.93 -0.36 0.16 16 38 H 0.09 0.73 7.97 -51.93 -0.41 0.32 16 39 H 0.08 0.65 5.20 -51.93 -0.27 0.38 16 40 H 0.16 2.21 8.06 -52.48 -0.42 1.79 16 41 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 43 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 44 H 0.19 2.62 8.06 -52.48 -0.42 2.19 16 45 H 0.40 1.27 9.10 45.56 0.41 1.68 16 LS Contribution 387.71 15.07 5.84 5.84 Total: -1.00 -30.87 387.71 -6.79 -37.66 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -4.70 Total: 2.24 kcal Atomic # 6 Polarization: 4.49 SS G_CDS: -3.27 Total: 1.22 kcal Atomic # 7 Polarization: -52.89 SS G_CDS: 1.12 Total: -51.77 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: -0.76 Total: -9.64 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -5.02 Total: 14.45 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -30.87 -6.79 -37.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000017302410.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.149 kcal (2) G-P(sol) polarization free energy of solvation -30.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds