Wall clock time and date at job start Tue Mar 31 2020 06:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30866 * 1 3 3 Si 1.86800 * 119.99792 * 2 1 4 4 H 1.48498 * 109.47431 * 270.00588 * 3 2 1 5 5 H 1.48499 * 109.47200 * 30.00218 * 3 2 1 6 6 H 1.48497 * 109.47476 * 150.00185 * 3 2 1 7 7 C 1.39910 * 120.00480 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00147 * 175.57114 * 7 2 1 9 9 C 1.41139 * 119.99689 * 355.57258 * 7 2 1 10 10 C 1.40883 * 120.15810 * 214.77245 * 9 7 2 11 11 C 1.36360 * 119.82568 * 180.02562 * 10 9 7 12 12 C 1.39514 * 120.16750 * 0.02579 * 11 10 9 13 13 N 1.39130 * 119.83270 * 179.97438 * 12 11 10 14 14 C 1.34773 * 119.99825 * 324.69862 * 13 12 11 15 15 O 1.21566 * 120.00472 * 4.02590 * 14 13 12 16 16 C 1.47754 * 119.99679 * 184.02023 * 14 13 12 17 17 C 1.39637 * 120.13673 * 359.72632 * 16 14 13 18 18 C 1.37905 * 119.85498 * 179.72194 * 17 16 14 19 19 C 1.38480 * 120.14120 * 0.55655 * 18 17 16 20 20 Br 1.89095 * 119.86004 * 179.70056 * 19 18 17 21 21 C 1.38483 * 120.27291 * 359.71624 * 19 18 17 22 22 C 1.37901 * 120.14143 * 0.02562 * 21 19 18 23 23 C 1.39508 * 120.32727 * 0.24664 * 12 11 10 24 24 C 1.36355 * 120.16655 * 359.44954 * 23 12 11 25 25 H 0.96994 * 120.00590 * 359.97438 * 1 2 3 26 26 H 1.07993 * 120.08641 * 0.02562 * 10 9 7 27 27 H 1.07998 * 119.91367 * 180.02562 * 11 10 9 28 28 H 0.97001 * 119.99610 * 144.42443 * 13 12 11 29 29 H 1.08002 * 120.06757 * 359.97438 * 17 16 14 30 30 H 1.08006 * 119.92583 * 180.27493 * 18 17 16 31 31 H 1.08002 * 119.92839 * 179.97438 * 21 19 18 32 32 H 1.07997 * 120.06977 * 179.97438 * 22 21 19 33 33 H 1.07999 * 119.91305 * 179.72466 * 23 12 11 34 34 H 1.08009 * 120.08173 * 180.24579 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 2.4900 2.0466 -1.4000 5 1 1.4400 2.6527 0.7001 6 1 3.5402 1.4403 0.7000 7 6 2.0083 -1.2116 -0.0005 8 1 3.0859 -1.2129 -0.0728 9 6 1.3058 -2.4321 0.0933 10 6 1.8652 -3.5187 0.7941 11 6 1.1808 -4.6950 0.8801 12 6 -0.0700 -4.8241 0.2757 13 7 -0.7619 -6.0277 0.3673 14 6 -0.0882 -7.1948 0.3561 15 8 1.1273 -7.1950 0.3399 16 6 -0.8270 -8.4744 0.3638 17 6 -2.2232 -8.4776 0.3883 18 6 -2.9070 -9.6752 0.3895 19 6 -2.2119 -10.8728 0.3780 20 35 -3.1575 -12.5103 0.3883 21 6 -0.8272 -10.8762 0.3594 22 6 -0.1319 -9.6853 0.3527 23 6 -0.6277 -3.7543 -0.4248 24 6 0.0421 -2.5700 -0.5140 25 1 -0.4851 0.8399 0.0004 26 1 2.8335 -3.4203 1.2621 27 1 1.6082 -5.5287 1.4174 28 1 -1.7290 -6.0265 0.4433 29 1 -2.7663 -7.5442 0.4022 30 1 -3.9870 -9.6790 0.4040 31 1 -0.2907 -11.8135 0.3510 32 1 0.9480 -9.6893 0.3386 33 1 -1.5944 -3.8631 -0.8938 34 1 -0.3927 -1.7414 -1.0533 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000017368293.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:33 Heat of formation + Delta-G solvation = 15.634371 kcal Electronic energy + Delta-G solvation = -20073.420769 eV Core-core repulsion = 16789.052868 eV Total energy + Delta-G solvation = -3284.367900 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 345.011 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.34161 -38.75065 -37.18197 -34.59495 -33.21026 -32.54556 -31.37412 -29.96951 -29.59397 -28.66792 -25.28913 -23.50974 -22.99063 -21.56791 -20.85346 -19.80172 -18.14366 -17.34132 -16.50656 -16.07535 -15.44919 -15.20487 -14.90637 -14.79380 -13.98990 -13.96380 -13.71254 -13.47168 -12.98278 -12.72142 -12.21338 -11.98753 -11.80625 -11.59267 -11.45764 -11.22428 -11.09489 -10.97706 -10.64264 -10.56336 -10.16562 -9.89220 -9.43935 -9.39974 -9.21720 -9.02278 -8.82924 -7.60009 -6.94135 -6.66941 -4.38242 0.40749 0.97878 1.23562 2.49514 2.88501 3.04805 3.07648 3.10381 3.18664 3.51619 3.74575 3.94764 4.39683 4.52912 4.64620 4.78134 4.95730 5.05865 5.24568 5.59097 5.60973 5.80296 5.82782 6.03607 6.14647 6.37697 6.39603 6.67316 6.86357 7.01838 7.14802 7.24379 7.59334 7.67284 7.79889 8.01743 8.17293 8.26335 8.54921 8.63938 8.88207 8.94502 10.24252 Molecular weight = 345.01amu Principal moments of inertia in cm(-1) A = 0.052876 B = 0.001867 C = 0.001812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.415843 B =14994.162904 C =15449.081213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.069 3.931 3 Si 0.916 3.084 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.459 4.459 8 H 0.077 0.923 9 C 0.102 3.898 10 C -0.206 4.206 11 C -0.082 4.082 12 C -0.002 4.002 13 N -0.640 5.640 14 C 0.537 3.463 15 O -0.524 6.524 16 C -0.105 4.105 17 C -0.085 4.085 18 C -0.097 4.097 19 C -0.076 4.076 20 Br -0.051 7.051 21 C -0.098 4.098 22 C -0.058 4.058 23 C -0.117 4.117 24 C -0.142 4.142 25 H 0.278 0.722 26 H 0.097 0.903 27 H 0.108 0.892 28 H 0.395 0.605 29 H 0.137 0.863 30 H 0.138 0.862 31 H 0.139 0.861 32 H 0.147 0.853 33 H 0.092 0.908 34 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.514 -20.506 0.709 22.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.146 4.146 3 Si 0.741 3.259 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.490 4.490 8 H 0.095 0.905 9 C 0.099 3.901 10 C -0.226 4.226 11 C -0.102 4.102 12 C -0.094 4.094 13 N -0.283 5.283 14 C 0.325 3.675 15 O -0.402 6.402 16 C -0.108 4.108 17 C -0.105 4.105 18 C -0.117 4.117 19 C -0.155 4.155 20 Br 0.035 6.965 21 C -0.118 4.118 22 C -0.077 4.077 23 C -0.137 4.137 24 C -0.162 4.162 25 H 0.089 0.911 26 H 0.115 0.885 27 H 0.126 0.874 28 H 0.230 0.770 29 H 0.155 0.845 30 H 0.156 0.844 31 H 0.156 0.844 32 H 0.164 0.836 33 H 0.110 0.890 34 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -9.206 -20.946 0.689 22.890 hybrid contribution -0.102 1.123 0.090 1.131 sum -9.308 -19.823 0.780 21.914 Atomic orbital electron populations 1.69752 1.07294 1.28783 1.38012 1.25892 0.94966 1.01223 0.92490 0.86182 0.80245 0.80375 0.79110 1.19488 1.20282 1.18693 1.19520 0.94819 0.90187 1.44443 0.90522 1.17749 0.92128 0.91946 0.88248 1.20826 1.01232 0.94730 1.05839 1.20407 0.94046 0.97074 0.98697 1.17236 0.96691 0.85369 1.10110 1.42888 1.09757 1.04768 1.70866 1.18158 0.87507 0.83442 0.78435 1.90771 1.13120 1.87006 1.49321 1.20317 0.93711 0.94445 1.02370 1.21391 0.93173 0.98333 0.97553 1.21046 1.00510 0.90530 0.99625 1.22005 0.94935 0.91912 1.06677 1.96738 1.75175 1.27020 1.97582 1.21113 0.91927 0.99133 0.99622 1.21337 1.01334 0.90144 0.94925 1.20327 0.99278 0.94015 1.00112 1.21200 0.97147 0.95756 1.02084 0.91095 0.88484 0.87420 0.76993 0.84537 0.84404 0.84363 0.83563 0.89033 0.84958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.60 10.60 55.55 0.59 -20.01 16 2 C 0.07 1.73 5.42 -17.34 -0.09 1.63 16 3 Si 0.92 18.71 29.56 -169.99 -5.03 13.68 16 4 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 5 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 6 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 7 C -0.46 -12.10 9.02 -37.86 -0.34 -12.44 16 8 H 0.08 1.95 7.85 -52.49 -0.41 1.54 16 9 C 0.10 2.70 5.55 -106.80 -0.59 2.10 16 10 C -0.21 -5.16 9.74 -39.26 -0.38 -5.54 16 11 C -0.08 -1.95 8.61 -39.78 -0.34 -2.29 16 12 C 0.00 -0.04 6.30 -83.60 -0.53 -0.57 16 13 N -0.64 -10.98 5.25 -10.62 -0.06 -11.03 16 14 C 0.54 9.21 7.60 -12.37 -0.09 9.12 16 15 O -0.52 -10.94 13.77 5.31 0.07 -10.86 16 16 C -0.10 -1.36 5.87 -104.96 -0.62 -1.98 16 17 C -0.08 -0.86 9.54 -39.18 -0.37 -1.24 16 18 C -0.10 -0.88 9.77 -39.61 -0.39 -1.27 16 19 C -0.08 -0.72 6.23 -39.40 -0.25 -0.96 16 20 Br -0.05 -0.43 33.69 -68.01 -2.29 -2.72 16 21 C -0.10 -0.95 9.77 -39.61 -0.39 -1.34 16 22 C -0.06 -0.68 9.59 -39.18 -0.38 -1.05 16 23 C -0.12 -2.61 9.90 -39.79 -0.39 -3.01 16 24 C -0.14 -3.59 8.61 -39.26 -0.34 -3.93 16 25 H 0.28 6.46 8.30 -40.82 -0.34 6.12 16 26 H 0.10 2.30 8.06 -52.49 -0.42 1.88 16 27 H 0.11 2.50 6.23 -52.49 -0.33 2.18 16 28 H 0.40 5.26 6.86 -40.82 -0.28 4.98 16 29 H 0.14 1.10 6.41 -52.49 -0.34 0.77 16 30 H 0.14 0.96 8.06 -52.48 -0.42 0.54 16 31 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 32 H 0.15 1.72 7.65 -52.49 -0.40 1.32 16 33 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 34 H 0.13 3.45 6.13 -52.48 -0.32 3.13 16 LS Contribution 317.37 15.07 4.78 4.78 Total: -1.00 -29.27 317.37 -10.32 -39.60 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -2.90 Total: 9.31 kcal Atomic # 6 Polarization: -17.27 SS G_CDS: -5.49 Total: -22.76 kcal Atomic # 7 Polarization: -31.57 SS G_CDS: 0.53 Total: -31.04 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: 0.07 Total: -10.86 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.03 Total: 13.68 kcal Atomic # 35 Polarization: -0.43 SS G_CDS: -2.29 Total: -2.72 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.27 -10.32 -39.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000017368293.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.232 kcal (2) G-P(sol) polarization free energy of solvation -29.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds