Wall clock time and date at job start Tue Mar 31 2020 06:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31357 * 1 3 3 Si 1.86811 * 119.99600 * 2 1 4 4 H 1.48503 * 109.47022 * 85.18962 * 3 2 1 5 5 H 1.48497 * 109.46886 * 205.19440 * 3 2 1 6 6 H 1.48506 * 109.46981 * 325.19206 * 3 2 1 7 7 C 1.38919 * 120.00689 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99637 * 20.54084 * 7 2 1 9 9 N 1.37493 * 120.00050 * 200.54103 * 7 2 1 10 10 C 1.33903 * 122.76819 * 219.07573 * 9 7 2 11 11 O 1.21227 * 125.43021 * 359.94960 * 10 9 7 12 12 C 1.51344 * 109.14745 * 179.97438 * 10 9 7 13 13 H 1.09000 * 110.93647 * 240.94614 * 12 10 9 14 14 C 1.53868 * 103.62224 * 359.97438 * 12 10 9 15 15 H 1.09001 * 110.89859 * 240.89704 * 14 12 10 16 16 C 1.33894 * 122.77272 * 38.78316 * 9 7 2 17 17 O 1.21219 * 125.43028 * 359.97438 * 16 9 7 18 18 C 1.54351 * 111.12182 * 117.14655 * 14 12 10 19 19 C 1.52065 * 105.44136 * 56.44154 * 18 14 12 20 20 C 1.33851 * 125.74885 * 125.04561 * 19 18 14 21 21 C 1.38875 * 119.00708 * 178.47161 * 20 19 18 22 22 C 1.38260 * 120.45116 * 358.25029 * 21 20 19 23 23 C 1.38882 * 120.44267 * 0.02562 * 22 21 20 24 24 C 1.36594 * 118.79152 * 0.02562 * 23 22 21 25 25 C 1.52065 * 124.79356 * 180.02562 * 24 23 22 26 26 C 1.50864 * 104.34371 * 126.07751 * 25 24 23 27 27 C 1.36592 * 124.59785 * 233.69751 * 26 25 24 28 28 C 1.38881 * 118.79982 * 180.38703 * 27 26 25 29 29 C 1.38263 * 120.44068 * 359.97438 * 28 27 26 30 30 C 1.38872 * 120.45334 * 359.97438 * 29 28 27 31 31 C 1.36603 * 118.78973 * 0.03932 * 30 29 28 32 32 H 0.96998 * 120.00610 * 0.02562 * 1 2 3 33 33 H 1.08999 * 113.08032 * 180.49475 * 18 14 12 34 34 H 1.07996 * 120.36705 * 356.76285 * 20 19 18 35 35 H 1.08005 * 119.77223 * 178.23577 * 21 20 19 36 36 H 1.08001 * 119.77870 * 180.02562 * 22 21 20 37 37 H 1.08003 * 120.59867 * 179.97438 * 23 22 21 38 38 H 1.08997 * 113.85195 * 2.09259 * 25 24 23 39 39 H 1.08003 * 120.60104 * 0.41045 * 27 26 25 40 40 H 1.07999 * 119.77857 * 179.97438 * 28 27 26 41 41 H 1.08003 * 119.77577 * 179.97438 * 29 28 27 42 42 H 1.07994 * 120.60868 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2475 1.6179 0.0000 4 1 2.3933 2.1053 1.3952 5 1 3.5921 1.4132 -0.5960 6 1 1.4993 2.6213 -0.7992 7 6 2.0083 -1.2030 0.0005 8 1 1.5198 -2.1088 -0.3273 9 7 3.3177 -1.2405 0.4184 10 6 4.2477 -1.9963 -0.1791 11 8 4.0584 -2.7204 -1.1327 12 6 5.5726 -1.8030 0.5263 13 1 6.3210 -1.3976 -0.1547 14 6 5.2452 -0.7964 1.6431 15 1 5.8284 0.1171 1.5264 16 6 3.7694 -0.5200 1.4526 17 8 3.1024 0.2327 2.1293 18 6 5.4727 -1.4187 3.0371 19 6 6.9202 -1.8846 3.0411 20 6 7.8503 -1.5394 3.9397 21 6 9.1268 -2.0749 3.8273 22 6 9.4215 -2.9791 2.8237 23 6 8.4450 -3.3637 1.9140 24 6 7.1921 -2.8322 2.0299 25 6 6.0236 -3.1566 1.1123 26 6 4.9229 -3.5909 2.0481 27 6 4.2395 -4.7693 1.9477 28 6 3.2405 -5.0442 2.8724 29 6 2.9461 -4.1393 3.8755 30 6 3.6457 -2.9436 3.9723 31 6 4.6268 -2.6797 3.0592 32 1 -0.4851 0.8400 -0.0004 33 1 5.2417 -0.7344 3.8534 34 1 7.6173 -0.8334 4.7230 35 1 9.8945 -1.7829 4.5285 36 1 10.4176 -3.3891 2.7466 37 1 8.6725 -4.0695 1.1288 38 1 6.2563 -3.8977 0.3477 39 1 4.4721 -5.4746 1.1635 40 1 2.6898 -5.9710 2.8075 41 1 2.1668 -4.3639 4.5887 42 1 3.4182 -2.2352 4.7550 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000017986609.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:05 Heat of formation + Delta-G solvation = 15.657872 kcal Electronic energy + Delta-G solvation = -31325.822937 eV Core-core repulsion = 27394.149686 eV Total energy + Delta-G solvation = -3931.673251 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.115 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -42.61453 -39.92197 -38.46157 -37.60206 -35.86932 -34.64739 -33.16399 -32.57697 -30.86543 -30.50474 -29.76349 -28.62064 -25.78106 -24.29325 -23.91559 -22.12234 -21.87929 -21.72308 -21.49876 -19.50708 -18.77017 -17.68186 -17.08291 -16.39297 -16.15037 -15.82957 -15.40076 -14.97396 -14.67106 -14.58936 -14.46434 -14.39269 -13.67439 -13.64479 -13.43793 -13.38095 -13.08595 -12.97804 -12.72686 -12.70958 -12.46746 -12.15873 -11.98433 -11.90527 -11.55845 -11.31478 -11.08075 -11.00155 -10.60677 -10.54262 -10.44109 -10.20849 -9.45131 -9.26552 -8.96645 -8.71628 -8.68394 -8.55236 -8.42560 -8.31575 -6.47725 -4.30162 1.17244 1.39049 1.58455 1.72014 2.33598 3.18245 3.24342 3.40648 3.67337 3.71227 3.88972 3.98749 4.25037 4.28609 4.57891 4.65542 4.73245 4.74542 4.82743 4.93449 4.96669 5.03296 5.12391 5.15097 5.22753 5.28617 5.32729 5.39024 5.46656 5.56857 5.65335 5.79933 5.82122 5.85330 5.89052 5.92297 6.02176 6.21845 6.31398 6.40857 6.42337 6.56724 6.68133 6.75586 6.87069 6.94731 7.24013 7.24210 7.63183 8.12757 8.38018 8.53546 9.07946 9.34931 10.58705 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.013352 B = 0.005469 C = 0.004935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.549842 B = 5118.510633 C = 5672.129164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.094 3.906 3 Si 0.885 3.115 4 H -0.244 1.244 5 H -0.278 1.278 6 H -0.291 1.291 7 C -0.366 4.366 8 H 0.112 0.888 9 N -0.411 5.411 10 C 0.505 3.495 11 O -0.497 6.497 12 C -0.118 4.118 13 H 0.121 0.879 14 C -0.118 4.118 15 H 0.116 0.884 16 C 0.486 3.514 17 O -0.480 6.480 18 C 0.013 3.987 19 C -0.073 4.073 20 C -0.101 4.101 21 C -0.123 4.123 22 C -0.122 4.122 23 C -0.107 4.107 24 C -0.072 4.072 25 C 0.014 3.986 26 C -0.086 4.086 27 C -0.097 4.097 28 C -0.117 4.117 29 C -0.115 4.115 30 C -0.093 4.093 31 C -0.082 4.082 32 H 0.278 0.722 33 H 0.113 0.887 34 H 0.125 0.875 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.126 0.874 38 H 0.116 0.884 39 H 0.124 0.876 40 H 0.120 0.880 41 H 0.121 0.879 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.903 -5.821 8.522 19.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.117 4.117 3 Si 0.713 3.287 4 H -0.169 1.169 5 H -0.203 1.203 6 H -0.219 1.219 7 C -0.491 4.491 8 H 0.130 0.870 9 N -0.139 5.139 10 C 0.294 3.706 11 O -0.372 6.372 12 C -0.140 4.140 13 H 0.139 0.861 14 C -0.139 4.139 15 H 0.134 0.866 16 C 0.276 3.724 17 O -0.356 6.356 18 C -0.006 4.006 19 C -0.073 4.073 20 C -0.119 4.119 21 C -0.141 4.141 22 C -0.140 4.140 23 C -0.125 4.125 24 C -0.072 4.072 25 C -0.005 4.005 26 C -0.086 4.086 27 C -0.115 4.115 28 C -0.135 4.135 29 C -0.133 4.133 30 C -0.111 4.111 31 C -0.082 4.082 32 H 0.089 0.911 33 H 0.131 0.869 34 H 0.143 0.857 35 H 0.138 0.862 36 H 0.138 0.862 37 H 0.144 0.856 38 H 0.134 0.866 39 H 0.142 0.858 40 H 0.138 0.862 41 H 0.139 0.861 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 16.183 -5.713 8.351 19.086 hybrid contribution 0.186 0.916 -0.175 0.951 sum 16.370 -4.797 8.176 18.916 Atomic orbital electron populations 1.69702 1.06535 1.28680 1.42873 1.25164 0.95131 0.98987 0.92443 0.86738 0.79677 0.83003 0.79256 1.16898 1.20315 1.21930 1.19044 0.83261 0.97817 1.48948 0.87047 1.42339 1.10757 1.36373 1.24451 1.20405 0.85786 0.81611 0.82753 1.90593 1.83322 1.37658 1.25658 1.22333 0.98387 0.95822 0.97451 0.86118 1.22313 0.96535 1.00023 0.95048 0.86562 1.20406 0.89403 0.82003 0.80565 1.90615 1.63170 1.34956 1.46908 1.19801 0.90330 0.94330 0.96141 1.19624 0.94868 0.97129 0.95668 1.19841 0.93055 1.00550 0.98426 1.21199 0.96395 0.97840 0.98670 1.21211 0.99090 0.98200 0.95454 1.20612 0.92135 1.00285 0.99428 1.20437 0.94158 0.96267 0.96349 1.19636 0.90749 0.95350 0.94717 1.19548 0.97663 0.95041 0.96351 1.20545 0.95950 0.96274 0.98694 1.21190 0.97521 0.99645 0.95127 1.21194 0.99255 0.94130 0.98696 1.20538 0.95107 0.96856 0.98632 1.19720 0.97319 0.95115 0.96093 0.91134 0.86875 0.85683 0.86198 0.86189 0.85640 0.86585 0.85771 0.86152 0.86117 0.85731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.23 13.95 55.49 0.77 -24.45 16 2 C 0.09 2.74 5.08 -17.50 -0.09 2.65 16 3 Si 0.89 22.87 24.75 -169.99 -4.21 18.66 16 4 H -0.24 -6.35 6.17 56.52 0.35 -6.00 16 5 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 7 C -0.37 -10.68 9.74 -14.76 -0.14 -10.83 16 8 H 0.11 3.51 8.06 -52.49 -0.42 3.09 16 9 N -0.41 -10.36 2.30 -60.58 -0.14 -10.50 16 10 C 0.51 11.42 6.27 -11.06 -0.07 11.35 16 11 O -0.50 -12.33 17.64 5.60 0.10 -12.23 16 12 C -0.12 -2.03 3.07 -90.36 -0.28 -2.31 16 13 H 0.12 1.76 8.14 -51.93 -0.42 1.34 16 14 C -0.12 -2.06 3.01 -90.29 -0.27 -2.33 16 15 H 0.12 1.77 8.14 -51.93 -0.42 1.35 16 16 C 0.49 11.22 4.59 -11.06 -0.05 11.16 16 17 O -0.48 -12.29 13.15 5.61 0.07 -12.21 16 18 C 0.01 0.19 3.51 -90.97 -0.32 -0.13 16 19 C -0.07 -0.96 4.87 -104.35 -0.51 -1.47 16 20 C -0.10 -1.11 9.85 -40.89 -0.40 -1.52 16 21 C -0.12 -1.20 10.04 -39.34 -0.40 -1.59 16 22 C -0.12 -1.18 10.05 -39.33 -0.40 -1.57 16 23 C -0.11 -1.16 9.96 -39.94 -0.40 -1.56 16 24 C -0.07 -0.94 4.81 -103.41 -0.50 -1.44 16 25 C 0.01 0.21 3.52 -91.52 -0.32 -0.11 16 26 C -0.09 -1.43 3.80 -104.74 -0.40 -1.83 16 27 C -0.10 -1.55 9.95 -39.94 -0.40 -1.95 16 28 C -0.12 -1.78 10.05 -39.33 -0.40 -2.18 16 29 C -0.11 -1.77 10.05 -39.34 -0.40 -2.17 16 30 C -0.09 -1.53 9.96 -39.94 -0.40 -1.93 16 31 C -0.08 -1.39 3.88 -104.25 -0.40 -1.79 16 32 H 0.28 7.70 8.31 -40.82 -0.34 7.36 16 33 H 0.11 1.60 8.14 -51.93 -0.42 1.18 16 34 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 35 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 36 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 37 H 0.13 1.12 8.06 -52.48 -0.42 0.70 16 38 H 0.12 1.57 8.14 -51.93 -0.42 1.15 16 39 H 0.12 1.76 8.06 -52.48 -0.42 1.33 16 40 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 41 H 0.12 1.56 8.06 -52.48 -0.42 1.14 16 42 H 0.12 1.84 8.06 -52.49 -0.42 1.42 16 LS Contribution 341.66 15.07 5.15 5.15 Total: -1.00 -34.30 341.66 -9.47 -43.76 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -4.68 Total: 3.33 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: -6.53 Total: -11.52 kcal Atomic # 7 Polarization: -35.58 SS G_CDS: 0.63 Total: -34.95 kcal Atomic # 8 Polarization: -24.62 SS G_CDS: 0.17 Total: -24.44 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -4.21 Total: 18.66 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.30 -9.47 -43.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000017986609.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.422 kcal (2) G-P(sol) polarization free energy of solvation -34.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds