Wall clock time and date at job start Tue Mar 31 2020 06:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34707 * 117.00135 * 2 1 4 4 O 1.21475 * 119.99964 * 0.02562 * 3 2 1 5 5 C 1.47727 * 120.00363 * 180.02562 * 3 2 1 6 6 C 1.39629 * 120.15088 * 180.02562 * 5 3 2 7 7 C 1.37949 * 119.84859 * 179.97438 * 6 5 3 8 8 C 1.38368 * 120.14515 * 0.02562 * 7 6 5 9 9 C 1.50704 * 119.84349 * 180.02562 * 8 7 6 10 10 H 1.08998 * 110.14978 * 340.18985 * 9 8 7 11 11 C 1.51114 * 110.00970 * 101.90102 * 9 8 7 12 12 C 1.40971 * 126.69309 * 299.24478 * 11 9 8 13 13 C 1.50700 * 119.99753 * 0.30270 * 12 11 9 14 14 O 1.21448 * 120.00499 * 180.29899 * 12 11 9 15 15 C 1.36157 * 106.62114 * 119.48107 * 11 9 8 16 16 O 1.35253 * 125.44093 * 179.74720 * 15 11 9 17 17 C 1.47298 * 109.11883 * 359.76336 * 15 11 9 18 18 O 1.21633 * 124.94988 * 180.02562 * 17 15 11 19 19 N 1.34506 * 110.09540 * 0.02562 * 17 15 11 20 20 C 1.35995 * 125.98495 * 179.97438 * 19 17 15 21 21 H 1.08008 * 119.99981 * 143.91561 * 20 19 17 22 22 C 1.39697 * 120.00268 * 323.90729 * 20 19 17 23 23 N 1.30950 * 119.99789 * 159.69258 * 22 20 19 24 24 Si 1.86797 * 119.99839 * 339.97369 * 22 20 19 25 25 H 1.48499 * 109.47428 * 94.08588 * 24 22 20 26 26 H 1.48504 * 109.46787 * 214.08415 * 24 22 20 27 27 H 1.48505 * 109.47007 * 334.07943 * 24 22 20 28 28 C 1.38360 * 120.30560 * 0.27029 * 8 7 6 29 29 C 1.37942 * 120.15465 * 359.45050 * 28 8 7 30 30 H 1.09000 * 109.47472 * 59.99883 * 1 2 3 31 31 H 1.09000 * 109.47274 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46967 * 299.99531 * 1 2 3 33 33 H 1.08001 * 120.07709 * 359.95603 * 6 5 3 34 34 H 1.08000 * 119.92473 * 180.02562 * 7 6 5 35 35 H 1.09007 * 109.47263 * 60.00221 * 13 12 11 36 36 H 1.09000 * 109.47577 * 179.97438 * 13 12 11 37 37 H 1.09001 * 109.47297 * 299.99965 * 13 12 11 38 38 H 0.96697 * 114.00069 * 179.97438 * 16 15 11 39 39 H 0.97006 * 119.99851 * 180.02562 * 23 22 20 40 40 H 1.08007 * 119.92289 * 179.73104 * 28 8 7 41 41 H 1.07997 * 120.08371 * 180.27457 * 29 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0635 1.2002 0.0000 4 8 1.4019 2.2190 0.0005 5 6 3.5387 1.2776 -0.0006 6 6 4.1759 2.5201 0.0000 7 6 5.5538 2.5850 0.0000 8 6 6.3043 1.4226 -0.0011 9 6 7.8093 1.5015 -0.0005 10 1 8.1339 2.4829 -0.3461 11 6 8.3405 1.2346 1.3887 12 6 8.0698 1.9830 2.5523 13 6 7.1608 3.1829 2.4818 14 8 8.5691 1.6609 3.6115 15 6 9.1359 0.1333 1.2967 16 8 9.8100 -0.4353 2.3222 17 6 9.1453 -0.3397 -0.0983 18 8 9.7636 -1.3062 -0.5021 19 7 8.3705 0.4529 -0.8603 20 6 8.1500 0.3105 -2.1946 21 1 7.1792 0.5396 -2.6091 22 6 9.1790 -0.1320 -3.0294 23 7 8.8969 -0.6460 -4.2003 24 14 10.9568 0.0023 -2.4720 25 1 11.3749 -1.2742 -1.8388 26 1 11.8237 0.2800 -3.6453 27 1 11.0852 1.1079 -1.4890 28 6 5.6794 0.1881 -0.0078 29 6 4.3023 0.1085 -0.0020 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 3.5912 3.4281 0.0001 34 1 6.0479 3.5454 0.0008 35 1 6.1757 2.8725 2.1333 36 1 7.0712 3.6296 3.4720 37 1 7.5774 3.9142 1.7893 38 1 10.3258 -1.2135 2.0704 39 1 9.6114 -0.9536 -4.7799 40 1 6.2713 -0.7153 -0.0130 41 1 3.8158 -0.8556 -0.0028 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000018030381.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:14 Heat of formation + Delta-G solvation = -121.005218 kcal Electronic energy + Delta-G solvation = -30605.597213 eV Core-core repulsion = 26224.855791 eV Total energy + Delta-G solvation = -4380.741422 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.114 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.21111 -40.49281 -38.73999 -38.56576 -37.26264 -36.49826 -35.74329 -33.47473 -31.96257 -31.18926 -30.89665 -29.59453 -28.09446 -26.29373 -25.70486 -23.39629 -22.63933 -22.10254 -20.83832 -20.63049 -18.78091 -18.13732 -18.09046 -17.25712 -17.17552 -16.43192 -16.23759 -15.52287 -15.38627 -15.03133 -14.77091 -14.69425 -14.59435 -14.25451 -13.95393 -13.63046 -13.58930 -13.51591 -13.32114 -13.03699 -12.95019 -12.75372 -12.42500 -12.29979 -12.21741 -11.98458 -11.80439 -11.69829 -11.27281 -10.98571 -10.93793 -10.68753 -10.56552 -10.28878 -9.58476 -9.35264 -8.88875 -8.84397 -8.72567 -8.39147 -8.21986 -6.78762 -4.41447 0.66933 0.90890 1.45385 2.50505 2.59902 2.88470 3.21114 3.24611 3.40586 3.59137 3.81214 3.87572 4.09593 4.17037 4.44469 4.60656 4.71224 4.84280 4.92642 4.93254 4.95483 5.01199 5.02913 5.15751 5.32457 5.36852 5.42936 5.46449 5.61265 5.75245 5.80698 5.88239 6.07852 6.13852 6.25495 6.32617 6.39042 6.41139 6.64257 6.89074 7.10681 7.32139 7.50837 7.65736 8.01576 8.05396 8.36342 8.73295 9.27348 10.22954 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.010891 B = 0.004268 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2570.367124 B = 6558.259030 C = 8074.564362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.354 6.354 3 C 0.513 3.487 4 O -0.512 6.512 5 C -0.135 4.135 6 C -0.056 4.056 7 C -0.123 4.123 8 C -0.029 4.029 9 C 0.197 3.803 10 H 0.113 0.887 11 C -0.311 4.311 12 C 0.416 3.584 13 C -0.203 4.203 14 O -0.475 6.475 15 C 0.174 3.826 16 O -0.422 6.422 17 C 0.394 3.606 18 O -0.549 6.549 19 N -0.395 5.395 20 C -0.315 4.315 21 H 0.117 0.883 22 C 0.086 3.914 23 N -0.820 5.820 24 Si 0.914 3.086 25 H -0.240 1.240 26 H -0.301 1.301 27 H -0.278 1.278 28 C -0.098 4.098 29 C -0.059 4.059 30 H 0.063 0.937 31 H 0.101 0.899 32 H 0.062 0.938 33 H 0.137 0.863 34 H 0.137 0.863 35 H 0.093 0.907 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.406 0.594 39 H 0.286 0.714 40 H 0.133 0.867 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.724 4.487 7.036 12.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.271 6.271 3 C 0.359 3.641 4 O -0.402 6.402 5 C -0.136 4.136 6 C -0.075 4.075 7 C -0.141 4.141 8 C -0.030 4.030 9 C 0.093 3.907 10 H 0.130 0.870 11 C -0.317 4.317 12 C 0.299 3.701 13 C -0.260 4.260 14 O -0.355 6.355 15 C 0.117 3.883 16 O -0.222 6.222 17 C 0.187 3.813 18 O -0.437 6.437 19 N -0.112 5.112 20 C -0.441 4.441 21 H 0.134 0.866 22 C -0.130 4.130 23 N -0.452 5.452 24 Si 0.743 3.257 25 H -0.165 1.165 26 H -0.230 1.230 27 H -0.204 1.204 28 C -0.116 4.116 29 C -0.077 4.077 30 H 0.082 0.918 31 H 0.120 0.880 32 H 0.081 0.919 33 H 0.155 0.845 34 H 0.155 0.845 35 H 0.112 0.888 36 H 0.096 0.904 37 H 0.106 0.894 38 H 0.260 0.740 39 H 0.096 0.904 40 H 0.151 0.849 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -9.644 4.474 7.437 12.974 hybrid contribution 0.825 -0.294 -0.344 0.941 sum -8.819 4.180 7.092 12.064 Atomic orbital electron populations 1.23264 0.76159 1.03717 1.02525 1.86567 1.23418 1.32785 1.84297 1.21302 0.89265 0.81285 0.72262 1.90809 1.66906 1.36039 1.46424 1.19031 0.88509 0.95246 1.10849 1.21115 0.94244 0.96481 0.95628 1.20957 0.93064 0.98277 1.01833 1.20075 0.94460 0.93659 0.94823 1.19304 0.89542 0.94692 0.87204 0.86989 1.20732 1.11048 1.03009 0.96926 1.19813 0.79472 0.84622 0.86232 1.22437 1.01235 0.98064 1.04305 1.90588 1.46032 1.67832 1.31091 1.21921 0.87567 0.90084 0.88709 1.84879 1.59604 1.45790 1.31880 1.18754 0.90334 0.86803 0.85377 1.90728 1.48554 1.28841 1.75619 1.43498 1.39728 1.20568 1.07357 1.19000 0.99838 1.46947 0.78287 0.86598 1.25503 1.00883 0.92350 0.94245 1.69503 1.35695 1.30154 1.09819 0.86239 0.81664 0.80618 0.77185 1.16508 1.23025 1.20373 1.21034 0.93975 0.98243 0.98322 1.21410 0.93643 0.97822 0.94847 0.91836 0.88021 0.91917 0.84518 0.84514 0.88830 0.90439 0.89370 0.74008 0.90352 0.84879 0.84548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.56 101.05 1.07 1.39 16 2 O -0.35 -4.33 9.82 -40.51 -0.40 -4.73 16 3 C 0.51 7.09 7.90 34.61 0.27 7.37 16 4 O -0.51 -7.89 16.14 -19.25 -0.31 -8.20 16 5 C -0.14 -1.85 5.87 -104.98 -0.62 -2.46 16 6 C -0.06 -0.71 9.60 -39.17 -0.38 -1.08 16 7 C -0.12 -1.52 6.92 -39.64 -0.27 -1.79 16 8 C -0.03 -0.44 4.09 -104.53 -0.43 -0.87 16 9 C 0.20 3.35 3.01 -69.89 -0.21 3.14 16 10 H 0.11 1.70 8.03 -51.93 -0.42 1.28 16 11 C -0.31 -5.43 5.45 -104.13 -0.57 -6.00 16 12 C 0.42 6.83 7.01 -33.27 -0.23 6.60 16 13 C -0.20 -2.39 8.73 36.01 0.31 -2.07 16 14 O -0.48 -9.37 16.82 -9.00 -0.15 -9.52 16 15 C 0.17 3.34 7.38 -36.65 -0.27 3.06 16 16 O -0.42 -7.37 12.70 -33.61 -0.43 -7.80 16 17 C 0.39 8.73 6.28 -12.70 -0.08 8.65 16 18 O -0.55 -13.71 12.88 5.25 0.07 -13.64 16 19 N -0.39 -8.46 1.67 -111.18 -0.19 -8.65 16 20 C -0.31 -7.62 9.90 -15.16 -0.15 -7.77 16 21 H 0.12 2.88 8.06 -52.48 -0.42 2.46 16 22 C 0.09 2.21 5.22 -17.38 -0.09 2.12 16 23 N -0.82 -21.74 13.93 55.53 0.77 -20.97 16 24 Si 0.91 21.92 24.65 -169.99 -4.19 17.73 16 25 H -0.24 -6.08 6.10 56.52 0.34 -5.73 16 26 H -0.30 -7.03 7.11 56.52 0.40 -6.63 16 27 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 28 C -0.10 -1.54 9.14 -39.64 -0.36 -1.90 16 29 C -0.06 -0.83 9.62 -39.17 -0.38 -1.20 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.14 1.52 7.65 -52.49 -0.40 1.12 16 34 H 0.14 1.29 7.70 -52.49 -0.40 0.89 16 35 H 0.09 1.03 5.34 -51.92 -0.28 0.75 16 36 H 0.08 0.85 8.12 -51.93 -0.42 0.43 16 37 H 0.09 0.84 8.10 -51.93 -0.42 0.42 16 38 H 0.41 5.47 8.85 45.56 0.40 5.87 16 39 H 0.29 7.08 8.30 -40.82 -0.34 6.74 16 40 H 0.13 2.33 7.68 -52.48 -0.40 1.93 16 41 H 0.14 1.70 7.61 -52.49 -0.40 1.30 16 LS Contribution 355.44 15.07 5.36 5.36 Total: -1.00 -32.78 355.44 -5.47 -38.25 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -3.62 Total: 5.01 kcal Atomic # 6 Polarization: 9.54 SS G_CDS: -2.38 Total: 7.16 kcal Atomic # 7 Polarization: -30.21 SS G_CDS: 0.59 Total: -29.62 kcal Atomic # 8 Polarization: -42.66 SS G_CDS: -1.22 Total: -43.88 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.19 Total: 17.73 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.78 -5.47 -38.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000018030381.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.760 kcal (2) G-P(sol) polarization free energy of solvation -32.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds