Wall clock time and date at job start Tue Mar 31 2020 06:30:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34707 * 116.99350 * 2 1 4 4 O 1.21473 * 120.00803 * 0.02562 * 3 2 1 5 5 C 1.47732 * 119.99706 * 179.97438 * 3 2 1 6 6 C 1.39623 * 120.14833 * 179.97438 * 5 3 2 7 7 C 1.37947 * 119.84852 * 179.97438 * 6 5 3 8 8 C 1.38368 * 120.14774 * 0.02562 * 7 6 5 9 9 C 1.50702 * 119.84931 * 179.97438 * 8 7 6 10 10 H 1.09004 * 110.09691 * 12.31488 * 9 8 7 11 11 C 1.51111 * 110.12218 * 250.63101 * 9 8 7 12 12 C 1.40974 * 126.68563 * 60.80938 * 11 9 8 13 13 C 1.50705 * 119.99671 * 179.97438 * 12 11 9 14 14 O 1.21450 * 120.00026 * 359.93174 * 12 11 9 15 15 C 1.36150 * 106.62387 * 240.83510 * 11 9 8 16 16 O 1.35248 * 125.44072 * 180.02562 * 15 11 9 17 17 C 1.47294 * 109.11949 * 359.97438 * 15 11 9 18 18 O 1.21629 * 124.95159 * 179.97438 * 17 15 11 19 19 N 1.34500 * 110.09505 * 0.02562 * 17 15 11 20 20 C 1.36010 * 125.98706 * 180.02562 * 19 17 15 21 21 H 1.07998 * 119.99624 * 207.84353 * 20 19 17 22 22 C 1.39691 * 119.99743 * 27.84709 * 20 19 17 23 23 N 1.30958 * 119.99973 * 33.39709 * 22 20 19 24 24 Si 1.86796 * 120.00007 * 213.39318 * 22 20 19 25 25 H 1.48504 * 109.46999 * 85.00114 * 24 22 20 26 26 H 1.48499 * 109.47280 * 204.99670 * 24 22 20 27 27 H 1.48498 * 109.47243 * 325.00033 * 24 22 20 28 28 C 1.38369 * 120.30295 * 0.26899 * 8 7 6 29 29 C 1.37947 * 120.14734 * 359.45256 * 28 8 7 30 30 H 1.08998 * 109.47165 * 60.00599 * 1 2 3 31 31 H 1.09004 * 109.46489 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47479 * 299.99965 * 1 2 3 33 33 H 1.08001 * 120.08235 * 0.02562 * 6 5 3 34 34 H 1.08001 * 119.92756 * 180.02562 * 7 6 5 35 35 H 1.08990 * 109.47144 * 84.84360 * 13 12 11 36 36 H 1.09003 * 109.46760 * 204.84350 * 13 12 11 37 37 H 1.08999 * 109.47256 * 324.83517 * 13 12 11 38 38 H 0.96706 * 113.99662 * 179.97438 * 16 15 11 39 39 H 0.97003 * 119.99721 * 179.97438 * 23 22 20 40 40 H 1.07997 * 119.92501 * 179.72244 * 28 8 7 41 41 H 1.07998 * 120.07246 * 180.26992 * 29 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4019 2.2191 0.0005 5 6 3.5388 1.2777 0.0006 6 6 4.1758 2.5202 0.0000 7 6 5.5537 2.5852 0.0011 8 6 6.3043 1.4228 0.0022 9 6 7.8093 1.5018 0.0028 10 1 8.1308 2.5203 0.2206 11 6 8.3536 1.0582 -1.3353 12 6 8.0948 1.6505 -2.5881 13 6 8.7217 1.0811 -3.8347 14 8 7.3659 2.6191 -2.6629 15 6 9.1423 -0.0253 -1.0951 16 8 9.8207 -0.7249 -2.0330 17 6 9.1398 -0.3132 0.3494 18 8 9.7500 -1.2218 0.8799 19 7 8.3634 0.5745 0.9962 20 6 8.1328 0.6074 2.3362 21 1 7.2083 1.0174 2.7150 22 6 9.0918 0.1110 3.2223 23 7 10.3655 0.2226 2.9386 24 14 8.5576 -0.7120 4.8118 25 1 8.2622 -2.1441 4.5527 26 1 9.6472 -0.6050 5.8151 27 1 7.3388 -0.0412 5.3312 28 6 5.6795 0.1883 -0.0034 29 6 4.3023 0.1088 0.0013 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 3.5912 3.4283 -0.0004 34 1 6.0478 3.5456 0.0011 35 1 8.1072 0.2626 -4.2091 36 1 8.7918 1.8598 -4.5942 37 1 9.7197 0.7095 -3.6023 38 1 10.3311 -1.4658 -1.6784 39 1 11.0314 -0.1218 3.5541 40 1 6.2713 -0.7151 -0.0071 41 1 3.8159 -0.8554 0.0013 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000018155474.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:19 Heat of formation + Delta-G solvation = -126.155952 kcal Electronic energy + Delta-G solvation = -30449.982025 eV Core-core repulsion = 26069.017251 eV Total energy + Delta-G solvation = -4380.964774 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.114 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -40.84119 -40.35135 -38.49398 -38.26987 -37.18521 -36.38609 -35.17397 -33.37179 -31.52057 -31.09881 -30.68741 -29.21513 -28.00931 -26.12150 -25.46011 -23.30886 -22.42497 -21.98951 -20.76810 -20.48934 -18.61538 -17.96734 -17.80220 -17.11331 -16.88456 -16.35114 -15.90025 -15.23567 -15.18840 -14.83417 -14.58004 -14.53269 -14.37970 -13.98629 -13.92764 -13.84076 -13.48842 -13.36842 -13.13712 -12.79010 -12.59861 -12.32262 -12.21701 -12.03664 -11.79990 -11.74444 -11.67590 -11.41620 -11.20928 -10.98842 -10.87314 -10.79491 -10.51292 -10.47257 -9.46873 -9.34439 -8.73254 -8.63255 -8.59948 -8.14822 -7.85931 -6.77449 -4.16969 0.85719 1.10869 1.66826 2.65006 2.68794 3.06207 3.14827 3.16435 3.23103 3.70924 3.96331 4.09107 4.24994 4.46520 4.60299 4.76179 4.84071 4.97783 5.05603 5.06763 5.12602 5.18598 5.28068 5.38354 5.54539 5.58172 5.65837 5.72968 5.78616 6.00983 6.05348 6.14049 6.22395 6.25585 6.31025 6.48560 6.58270 6.71122 6.88436 7.07263 7.09157 7.42698 7.55725 7.75956 8.19137 8.28858 8.62191 8.95747 9.75733 10.27235 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.008829 B = 0.004626 C = 0.003417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3170.490721 B = 6051.220932 C = 8192.164986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.355 6.355 3 C 0.514 3.486 4 O -0.513 6.513 5 C -0.140 4.140 6 C -0.056 4.056 7 C -0.105 4.105 8 C -0.018 4.018 9 C 0.203 3.797 10 H 0.104 0.896 11 C -0.315 4.315 12 C 0.416 3.584 13 C -0.191 4.191 14 O -0.489 6.489 15 C 0.162 3.838 16 O -0.442 6.442 17 C 0.409 3.591 18 O -0.551 6.551 19 N -0.378 5.378 20 C -0.319 4.319 21 H 0.106 0.894 22 C 0.065 3.935 23 N -0.766 5.766 24 Si 0.919 3.081 25 H -0.270 1.270 26 H -0.281 1.281 27 H -0.266 1.266 28 C -0.104 4.104 29 C -0.065 4.065 30 H 0.062 0.938 31 H 0.100 0.900 32 H 0.062 0.938 33 H 0.134 0.866 34 H 0.133 0.867 35 H 0.086 0.914 36 H 0.074 0.926 37 H 0.090 0.910 38 H 0.407 0.593 39 H 0.280 0.720 40 H 0.129 0.871 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.542 -1.468 -6.564 10.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.272 6.272 3 C 0.360 3.640 4 O -0.403 6.403 5 C -0.141 4.141 6 C -0.074 4.074 7 C -0.123 4.123 8 C -0.019 4.019 9 C 0.098 3.902 10 H 0.122 0.878 11 C -0.322 4.322 12 C 0.300 3.700 13 C -0.249 4.249 14 O -0.370 6.370 15 C 0.106 3.894 16 O -0.244 6.244 17 C 0.200 3.800 18 O -0.435 6.435 19 N -0.094 5.094 20 C -0.445 4.445 21 H 0.124 0.876 22 C -0.153 4.153 23 N -0.396 5.396 24 Si 0.743 3.257 25 H -0.195 1.195 26 H -0.207 1.207 27 H -0.190 1.190 28 C -0.123 4.123 29 C -0.083 4.083 30 H 0.080 0.920 31 H 0.119 0.881 32 H 0.081 0.919 33 H 0.152 0.848 34 H 0.151 0.849 35 H 0.104 0.896 36 H 0.092 0.908 37 H 0.108 0.892 38 H 0.262 0.738 39 H 0.090 0.910 40 H 0.147 0.853 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -8.870 -0.776 -6.595 11.080 hybrid contribution 0.162 -0.812 0.943 1.255 sum -8.709 -1.588 -5.652 10.502 Atomic orbital electron populations 1.23248 0.76357 1.03580 1.02494 1.86568 1.23267 1.32922 1.84439 1.21342 0.89307 0.81188 0.72184 1.90802 1.66924 1.36047 1.46545 1.18974 0.88286 0.95278 1.11551 1.21109 0.94380 0.96322 0.95596 1.20933 0.92822 0.98490 1.00073 1.20076 0.94761 0.93372 0.93715 1.19080 0.89125 0.96137 0.85818 0.87831 1.20609 1.11691 1.03500 0.96370 1.19948 0.78543 0.82693 0.88797 1.22177 1.03185 1.02377 0.97114 1.90533 1.32255 1.24909 1.89329 1.22053 0.87453 0.88894 0.90956 1.84682 1.60578 1.45325 1.33775 1.18146 0.89937 0.86778 0.85108 1.90680 1.48713 1.33237 1.70873 1.43397 1.39441 1.21347 1.05234 1.19332 1.02992 1.44082 0.78054 0.87619 1.25381 0.93789 0.96474 0.99686 1.69794 1.01106 1.31964 1.36693 0.86090 0.78877 0.80693 0.79990 1.19486 1.20666 1.19022 1.20945 0.93863 0.98014 0.99446 1.21323 0.93648 0.97563 0.95782 0.91950 0.88114 0.91920 0.84823 0.84883 0.89570 0.90752 0.89156 0.73769 0.90953 0.85342 0.84817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.56 101.05 1.07 1.41 16 2 O -0.36 -4.68 9.82 -40.51 -0.40 -5.08 16 3 C 0.51 7.87 7.90 34.61 0.27 8.15 16 4 O -0.51 -8.72 16.14 -19.24 -0.31 -9.03 16 5 C -0.14 -2.20 5.87 -104.98 -0.62 -2.82 16 6 C -0.06 -0.88 9.60 -39.17 -0.38 -1.25 16 7 C -0.10 -1.73 9.66 -39.64 -0.38 -2.11 16 8 C -0.02 -0.33 4.34 -104.52 -0.45 -0.79 16 9 C 0.20 4.01 3.18 -69.89 -0.22 3.78 16 10 H 0.10 2.05 7.95 -51.93 -0.41 1.64 16 11 C -0.32 -5.85 5.35 -104.14 -0.56 -6.41 16 12 C 0.42 7.25 6.99 -33.27 -0.23 7.02 16 13 C -0.19 -2.62 9.44 36.01 0.34 -2.28 16 14 O -0.49 -9.52 17.33 5.41 0.09 -9.43 16 15 C 0.16 3.05 7.31 -36.65 -0.27 2.78 16 16 O -0.44 -6.55 10.97 -17.44 -0.19 -6.74 16 17 C 0.41 9.48 7.39 -12.70 -0.09 9.39 16 18 O -0.55 -14.49 15.33 5.25 0.08 -14.41 16 19 N -0.38 -8.66 2.28 -111.18 -0.25 -8.92 16 20 C -0.32 -7.73 9.57 -15.16 -0.15 -7.88 16 21 H 0.11 2.45 8.02 -52.49 -0.42 2.03 16 22 C 0.07 1.62 4.45 -17.38 -0.08 1.54 16 23 N -0.77 -20.16 11.89 55.53 0.66 -19.50 16 24 Si 0.92 19.33 29.66 -169.99 -5.04 14.29 16 25 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 26 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 27 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 28 C -0.10 -1.81 9.22 -39.64 -0.37 -2.18 16 29 C -0.06 -1.00 9.62 -39.17 -0.38 -1.38 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.13 1.92 7.65 -52.49 -0.40 1.52 16 34 H 0.13 2.01 7.99 -52.49 -0.42 1.59 16 35 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.09 1.20 6.17 -51.93 -0.32 0.88 16 38 H 0.41 4.90 8.86 45.56 0.40 5.30 16 39 H 0.28 6.94 8.30 -40.82 -0.34 6.60 16 40 H 0.13 2.31 7.93 -52.49 -0.42 1.89 16 41 H 0.13 1.78 7.61 -52.49 -0.40 1.38 16 LS Contribution 366.36 15.07 5.52 5.52 Total: -1.00 -31.66 366.36 -5.96 -37.62 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -3.63 Total: 8.71 kcal Atomic # 6 Polarization: 9.46 SS G_CDS: -2.49 Total: 6.97 kcal Atomic # 7 Polarization: -28.82 SS G_CDS: 0.41 Total: -28.42 kcal Atomic # 8 Polarization: -43.96 SS G_CDS: -0.73 Total: -44.69 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.04 Total: 14.29 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.66 -5.96 -37.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000018155474.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.537 kcal (2) G-P(sol) polarization free energy of solvation -31.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds