Wall clock time and date at job start Tue Mar 31 2020 05:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43191 * 179.97438 * 2 1 4 4 C 1.39653 * 120.15172 * 311.57622 * 3 2 1 5 5 C 1.37935 * 119.84499 * 179.97438 * 4 3 2 6 6 C 1.38378 * 120.15362 * 359.74718 * 5 4 3 7 7 C 1.38342 * 120.30394 * 0.50893 * 6 5 4 8 8 S 1.76202 * 119.92559 * 179.77050 * 7 6 5 9 9 O 1.42094 * 106.40345 * 161.35962 * 8 7 6 10 10 O 1.42097 * 106.40220 * 28.43349 * 8 7 6 11 11 N 1.65605 * 107.21253 * 274.89806 * 8 7 6 12 12 C 1.39777 * 120.00058 * 296.69456 * 11 8 7 13 13 C 1.38952 * 120.00222 * 134.52935 * 12 11 8 14 14 C 1.38006 * 119.99544 * 180.02562 * 13 12 11 15 15 C 1.38908 * 120.00424 * 0.02562 * 14 13 12 16 16 O 1.35796 * 119.99263 * 179.97438 * 15 14 13 17 17 C 1.34808 * 117.00312 * 5.44764 * 16 15 14 18 18 H 1.08009 * 120.00012 * 354.92195 * 17 16 15 19 19 C 1.38627 * 120.00231 * 174.91751 * 17 16 15 20 20 N 1.31585 * 119.99899 * 180.02562 * 19 17 16 21 21 Si 1.86792 * 119.99849 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47108 * 89.99582 * 21 19 17 23 23 H 1.48499 * 109.47166 * 209.99545 * 21 19 17 24 24 H 1.48500 * 109.47073 * 330.00028 * 21 19 17 25 25 C 1.38896 * 120.00791 * 0.24979 * 15 14 13 26 26 C 1.38007 * 120.00927 * 359.45272 * 25 15 14 27 27 C 1.37967 * 120.15109 * 359.48842 * 7 6 5 28 28 H 1.07992 * 120.07625 * 0.02562 * 4 3 2 29 29 H 1.07998 * 119.92174 * 180.02562 * 5 4 3 30 30 H 1.07995 * 119.85009 * 180.27892 * 6 5 4 31 31 H 0.97007 * 119.99618 * 116.70557 * 11 8 7 32 32 H 1.07999 * 120.00780 * 0.02562 * 13 12 11 33 33 H 1.08003 * 120.00132 * 179.97438 * 14 13 12 34 34 H 0.96994 * 119.99340 * 180.02562 * 20 19 17 35 35 H 1.08009 * 119.99348 * 179.70542 * 25 15 14 36 36 H 1.07997 * 120.00224 * 180.27686 * 26 25 15 37 37 H 1.08003 * 120.08036 * 180.23362 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2698 -0.8004 0.9034 5 6 4.6491 -0.7953 0.8975 6 6 5.3374 -0.0029 -0.0042 7 6 4.6485 0.7971 -0.8983 8 16 5.5351 1.8068 -2.0382 9 8 4.6190 2.1470 -3.0697 10 8 6.7702 1.1476 -2.2817 11 7 5.9051 3.2192 -1.2567 12 6 4.8817 4.0652 -0.8201 13 6 4.9284 4.6105 0.4571 14 6 3.9176 5.4454 0.8882 15 6 2.8533 5.7401 0.0457 16 8 1.8585 6.5611 0.4704 17 6 2.0194 7.1457 1.6744 18 1 2.8690 6.8891 2.2901 19 6 1.0946 8.0760 2.1225 20 7 1.2520 8.6469 3.2975 21 14 -0.3751 8.5192 1.0581 22 1 -1.5067 7.6110 1.3737 23 1 -0.7768 9.9230 1.3286 24 1 -0.0100 8.3760 -0.3742 25 6 2.8035 5.1905 -1.2289 26 6 3.8172 4.3605 -1.6628 27 6 3.2689 0.8017 -0.9035 28 1 2.7338 -1.4230 1.6043 29 1 5.1931 -1.4146 1.5952 30 1 6.4174 -0.0060 -0.0076 31 1 6.8322 3.4595 -1.1022 32 1 5.7557 4.3812 1.1124 33 1 3.9536 5.8690 1.8811 34 1 0.6046 9.2976 3.6111 35 1 1.9734 5.4160 -1.8821 36 1 3.7806 3.9368 -2.6555 37 1 2.7323 1.4238 -1.6046 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000018895583.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:29 Heat of formation + Delta-G solvation = -6.555865 kcal Electronic energy + Delta-G solvation = -26539.085103 eV Core-core repulsion = 22567.945016 eV Total energy + Delta-G solvation = -3971.140087 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 344.066 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -39.80652 -39.43944 -37.66614 -37.14700 -36.63099 -36.04846 -34.06425 -32.41296 -31.95897 -31.73441 -30.46073 -27.90518 -25.24360 -24.46972 -23.68741 -22.42515 -21.48855 -20.40803 -19.16038 -18.18189 -17.67153 -17.44155 -17.01031 -16.90313 -16.43603 -16.02907 -14.99686 -14.92585 -14.48968 -14.37596 -14.22491 -13.96719 -13.88295 -13.46081 -13.22922 -13.08855 -12.88661 -12.77202 -12.63022 -12.61708 -12.41631 -12.29685 -12.16313 -11.94251 -11.80987 -11.45465 -11.20473 -11.00712 -10.76786 -10.27266 -10.09464 -9.86711 -9.48895 -9.43907 -8.92550 -8.48726 -7.33650 -6.52575 -4.18613 0.05113 0.28426 0.58916 1.93226 1.97722 2.42181 2.44069 2.85764 3.17296 3.20826 3.34694 3.35070 3.50342 3.57010 4.13666 4.15621 4.27171 4.40006 4.46412 4.59760 4.73058 4.92690 5.00147 5.06708 5.29302 5.33883 5.43277 5.52142 5.61519 5.67704 5.72674 5.94835 6.12668 6.21267 6.29845 6.59058 6.67996 6.96616 7.05293 7.10667 7.23913 7.46369 7.66299 7.90829 8.82000 9.42215 10.54325 Molecular weight = 344.07amu Principal moments of inertia in cm(-1) A = 0.011773 B = 0.003589 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.717490 B = 7800.078756 C = 8949.898004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C 0.250 3.750 3 C -0.044 4.044 4 C -0.018 4.018 5 C -0.140 4.140 6 C 0.008 3.992 7 C -0.673 4.673 8 S 2.690 3.310 9 O -0.947 6.947 10 O -0.960 6.960 11 N -1.040 6.040 12 C 0.034 3.966 13 C -0.072 4.072 14 C -0.209 4.209 15 C 0.157 3.843 16 O -0.210 6.210 17 C -0.391 4.391 18 H 0.108 0.892 19 C 0.065 3.935 20 N -0.874 5.874 21 Si 0.904 3.096 22 H -0.273 1.273 23 H -0.281 1.281 24 H -0.258 1.258 25 C -0.173 4.173 26 C -0.103 4.103 27 C 0.036 3.964 28 H 0.141 0.859 29 H 0.144 0.856 30 H 0.146 0.854 31 H 0.420 0.580 32 H 0.117 0.883 33 H 0.138 0.862 34 H 0.281 0.719 35 H 0.125 0.875 36 H 0.149 0.851 37 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.514 -17.046 -5.306 20.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.077 5.077 2 C -0.066 4.066 3 C -0.048 4.048 4 C -0.039 4.039 5 C -0.159 4.159 6 C -0.012 4.012 7 C -0.759 4.759 8 S 2.781 3.219 9 O -0.937 6.937 10 O -0.950 6.950 11 N -0.793 5.793 12 C -0.061 4.061 13 C -0.094 4.094 14 C -0.229 4.229 15 C 0.104 3.896 16 O -0.115 6.115 17 C -0.466 4.466 18 H 0.126 0.874 19 C -0.139 4.139 20 N -0.511 5.511 21 Si 0.730 3.270 22 H -0.198 1.198 23 H -0.207 1.207 24 H -0.182 1.182 25 C -0.193 4.193 26 C -0.124 4.124 27 C 0.014 3.986 28 H 0.159 0.841 29 H 0.162 0.838 30 H 0.164 0.836 31 H 0.257 0.743 32 H 0.135 0.865 33 H 0.156 0.844 34 H 0.091 0.909 35 H 0.143 0.857 36 H 0.167 0.833 37 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 8.500 -17.122 -6.139 20.078 hybrid contribution -0.053 0.285 0.792 0.843 sum 8.448 -16.837 -5.348 19.582 Atomic orbital electron populations 1.81289 1.11808 1.07428 1.07163 1.25494 0.92430 0.94298 0.94387 1.16018 0.84827 1.02846 1.01082 1.21519 0.94615 0.93588 0.94146 1.21229 0.93709 1.00857 1.00126 1.21148 1.00672 0.89753 0.89594 1.30989 1.05748 1.18587 1.20576 1.02315 0.73390 0.72304 0.73931 1.93563 1.65153 1.82490 1.52479 1.93589 1.43086 1.74190 1.84142 1.52759 1.14267 1.34849 1.77399 1.16916 0.92101 1.02595 0.94490 1.20754 0.98235 0.97053 0.93363 1.21181 0.95882 1.03896 1.01967 1.19233 0.87552 0.90428 0.92430 1.83590 1.38374 1.53109 1.36385 1.20780 1.12837 1.21911 0.91083 0.87441 1.24482 0.98608 0.94724 0.96068 1.69650 1.36668 1.26934 1.17873 0.86189 0.81527 0.77717 0.81602 1.19796 1.20685 1.18171 1.20144 1.01351 1.03076 0.94774 1.21375 0.93771 0.97737 0.99494 1.21040 0.92155 0.91970 0.93418 0.84112 0.83824 0.83588 0.74292 0.86531 0.84402 0.90881 0.85726 0.83342 0.82884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -5.99 18.54 41.84 0.78 -5.21 16 2 C 0.25 3.10 15.33 -22.48 -0.34 2.76 16 3 C -0.04 -0.44 5.73 -106.93 -0.61 -1.06 16 4 C -0.02 -0.13 9.76 -39.16 -0.38 -0.52 16 5 C -0.14 -0.90 10.03 -39.64 -0.40 -1.30 16 6 C 0.01 0.06 9.51 -39.49 -0.38 -0.31 16 7 C -0.67 -6.75 5.86 -39.64 -0.23 -6.98 16 8 S 2.69 29.94 5.65 -107.50 -0.61 29.34 16 9 O -0.95 -12.85 14.17 -57.17 -0.81 -13.66 16 10 O -0.96 -11.83 17.40 -57.17 -1.00 -12.82 16 11 N -1.04 -11.26 5.77 32.45 0.19 -11.07 16 12 C 0.03 0.48 6.18 -83.71 -0.52 -0.03 16 13 C -0.07 -1.10 9.96 -39.40 -0.39 -1.50 16 14 C -0.21 -4.00 9.16 -39.42 -0.36 -4.36 16 15 C 0.16 3.33 6.65 -39.09 -0.26 3.07 16 16 O -0.21 -5.24 8.58 -0.03 0.00 -5.24 16 17 C -0.39 -10.44 9.94 30.88 0.31 -10.13 16 18 H 0.11 2.90 5.43 -52.48 -0.28 2.61 16 19 C 0.07 1.77 5.49 -17.51 -0.10 1.67 16 20 N -0.87 -24.34 13.97 55.48 0.77 -23.57 16 21 Si 0.90 21.05 28.62 -169.99 -4.86 16.18 16 22 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.26 -6.01 7.11 56.52 0.40 -5.60 16 25 C -0.17 -3.18 9.98 -39.42 -0.39 -3.57 16 26 C -0.10 -1.63 9.20 -39.40 -0.36 -1.99 16 27 C 0.04 0.39 9.23 -39.17 -0.36 0.03 16 28 H 0.14 0.71 8.06 -52.49 -0.42 0.28 16 29 H 0.14 0.48 8.06 -52.49 -0.42 0.06 16 30 H 0.15 0.84 7.72 -52.49 -0.41 0.44 16 31 H 0.42 3.44 8.96 -34.47 -0.31 3.13 16 32 H 0.12 1.44 8.06 -52.49 -0.42 1.01 16 33 H 0.14 2.79 5.63 -52.48 -0.30 2.49 16 34 H 0.28 7.25 8.31 -40.82 -0.34 6.91 16 35 H 0.12 2.15 8.06 -52.48 -0.42 1.73 16 36 H 0.15 2.20 5.63 -52.49 -0.30 1.91 16 37 H 0.15 1.67 7.50 -52.48 -0.39 1.28 16 LS Contribution 347.46 15.07 5.24 5.24 Total: -1.00 -32.71 347.46 -7.90 -40.61 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -2.81 Total: 4.43 kcal Atomic # 6 Polarization: -19.44 SS G_CDS: -4.78 Total: -24.23 kcal Atomic # 7 Polarization: -41.59 SS G_CDS: 1.74 Total: -39.85 kcal Atomic # 8 Polarization: -29.91 SS G_CDS: -1.81 Total: -31.72 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.86 Total: 16.18 kcal Atomic # 16 Polarization: 29.94 SS G_CDS: -0.61 Total: 29.34 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.71 -7.90 -40.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000018895583.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.051 kcal (2) G-P(sol) polarization free energy of solvation -32.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds