Wall clock time and date at job start Tue Mar 31 2020 05:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39651 * 120.15597 * 288.85869 * 3 2 1 5 5 C 1.37923 * 119.84770 * 180.29959 * 4 3 2 6 6 C 1.38376 * 120.15491 * 359.70293 * 5 4 3 7 7 C 1.38344 * 120.30396 * 359.97438 * 6 5 4 8 8 C 1.37965 * 120.15173 * 0.02562 * 7 6 5 9 9 S 1.76198 * 120.08085 * 179.97438 * 8 7 6 10 10 O 1.42107 * 106.40245 * 2.58109 * 9 8 7 11 11 O 1.42098 * 106.40603 * 229.66311 * 9 8 7 12 12 N 1.65602 * 107.22075 * 116.11802 * 9 8 7 13 13 C 1.39786 * 119.99983 * 296.30716 * 12 9 8 14 14 C 1.38952 * 120.00420 * 133.38043 * 13 12 9 15 15 C 1.38007 * 119.99072 * 180.22913 * 14 13 12 16 16 C 1.38905 * 120.00904 * 359.49698 * 15 14 13 17 17 O 1.35793 * 119.99390 * 180.23364 * 16 15 14 18 18 C 1.34821 * 116.99600 * 185.90056 * 17 16 15 19 19 H 1.08000 * 119.99653 * 5.51485 * 18 17 16 20 20 C 1.38618 * 119.99913 * 185.51610 * 18 17 16 21 21 N 1.31583 * 119.99868 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 119.99855 * 359.97438 * 20 18 17 23 23 H 1.48503 * 109.47110 * 90.00087 * 22 20 18 24 24 H 1.48506 * 109.47026 * 209.99822 * 22 20 18 25 25 H 1.48496 * 109.47310 * 330.00052 * 22 20 18 26 26 C 1.38905 * 120.00569 * 0.50457 * 16 15 14 27 27 C 1.38010 * 120.00835 * 359.74448 * 26 16 15 28 28 H 1.08009 * 120.07122 * 359.97438 * 4 3 2 29 29 H 1.08002 * 119.92317 * 179.72392 * 5 4 3 30 30 H 1.07997 * 119.84894 * 180.02562 * 6 5 4 31 31 H 1.08002 * 119.92751 * 179.97438 * 7 6 5 32 32 H 0.96998 * 119.99690 * 116.30122 * 12 9 8 33 33 H 1.08002 * 120.00524 * 359.95823 * 14 13 12 34 34 H 1.08002 * 119.99622 * 179.72407 * 15 14 13 35 35 H 0.96998 * 119.99776 * 180.02562 * 21 20 18 36 36 H 1.07994 * 119.99207 * 179.72892 * 26 16 15 37 37 H 1.07999 * 120.00420 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2697 -0.3894 1.1427 5 6 4.6489 -0.3804 1.1377 6 6 5.3374 0.0079 0.0019 7 6 4.6487 0.3891 -1.1357 8 6 3.2691 0.3848 -1.1447 9 16 2.3938 0.8713 -2.5944 10 8 3.3767 1.1466 -3.5832 11 8 1.4235 1.8220 -2.1774 12 7 1.5530 -0.4523 -3.1268 13 6 2.2408 -1.5922 -3.5532 14 6 1.8448 -2.8486 -3.1111 15 6 2.5269 -3.9733 -3.5285 16 6 3.6027 -3.8504 -4.3986 17 8 4.2707 -4.9578 -4.8128 18 6 5.3777 -4.7620 -5.5571 19 1 5.7463 -3.7606 -5.7235 20 6 6.0426 -5.8461 -6.1086 21 7 7.1227 -5.6550 -6.8355 22 14 5.4052 -7.5781 -5.8201 23 1 4.4446 -7.9374 -6.8940 24 1 6.5427 -8.5328 -5.8337 25 1 4.7218 -7.6411 -4.5032 26 6 3.9987 -2.5945 -4.8406 27 6 3.3201 -1.4690 -4.4194 28 1 2.7335 -0.6922 2.0300 29 1 5.1928 -0.6775 2.0222 30 1 6.4174 0.0126 0.0033 31 1 5.1922 0.6914 -2.0187 32 1 0.5833 -0.4367 -3.1427 33 1 1.0060 -2.9446 -2.4376 34 1 2.2220 -4.9495 -3.1814 35 1 7.5878 -6.4136 -7.2217 36 1 4.8378 -2.4989 -5.5136 37 1 3.6283 -0.4925 -4.7628 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000018895592.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:22 Heat of formation + Delta-G solvation = -1.931307 kcal Electronic energy + Delta-G solvation = -26845.868669 eV Core-core repulsion = 22874.929118 eV Total energy + Delta-G solvation = -3970.939551 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 344.066 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -39.79913 -39.42150 -37.65829 -37.26764 -36.59854 -36.02328 -34.05669 -32.40173 -31.94127 -31.71815 -30.42888 -27.90674 -25.21084 -24.54487 -23.61600 -22.43767 -21.43153 -20.05333 -19.28764 -18.27035 -17.78135 -17.75242 -17.26369 -16.78955 -16.05508 -15.53903 -14.96690 -14.91469 -14.70270 -14.48503 -14.22555 -13.96536 -13.90527 -13.56078 -13.24544 -13.01143 -12.95444 -12.79465 -12.71488 -12.60274 -12.37779 -12.21937 -12.08206 -11.89825 -11.71129 -11.49589 -11.16515 -11.00253 -10.76050 -10.27658 -10.10525 -9.84286 -9.45250 -9.40996 -8.92058 -8.46279 -7.33270 -6.51314 -4.17215 -0.02185 0.24533 0.66417 1.95393 1.99289 2.22883 2.53667 2.76165 3.15674 3.20153 3.24520 3.33336 3.35532 3.56289 4.08653 4.15316 4.28645 4.48342 4.53695 4.72507 4.79706 4.91289 4.99166 5.10107 5.34855 5.37562 5.47229 5.55681 5.58149 5.68597 5.87778 5.98007 6.10577 6.28470 6.39240 6.58344 6.65751 6.94246 7.03639 7.13810 7.14883 7.46775 7.69041 7.92093 8.83083 9.43118 10.55685 Molecular weight = 344.07amu Principal moments of inertia in cm(-1) A = 0.014971 B = 0.003324 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.823513 B = 8421.589860 C = 8689.404569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.368 5.368 2 C 0.222 3.778 3 C 0.072 3.928 4 C -0.091 4.091 5 C -0.067 4.067 6 C -0.108 4.108 7 C -0.013 4.013 8 C -0.631 4.631 9 S 2.678 3.322 10 O -0.941 6.941 11 O -0.954 6.954 12 N -1.040 6.040 13 C 0.034 3.966 14 C -0.076 4.076 15 C -0.179 4.179 16 C 0.158 3.842 17 O -0.211 6.211 18 C -0.390 4.390 19 H 0.109 0.891 20 C 0.065 3.935 21 N -0.873 5.873 22 Si 0.905 3.095 23 H -0.273 1.273 24 H -0.281 1.281 25 H -0.259 1.259 26 C -0.202 4.202 27 C -0.091 4.091 28 H 0.141 0.859 29 H 0.142 0.858 30 H 0.143 0.857 31 H 0.156 0.844 32 H 0.419 0.581 33 H 0.117 0.883 34 H 0.122 0.878 35 H 0.281 0.719 36 H 0.141 0.859 37 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.521 9.944 14.823 18.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.043 5.043 2 C -0.095 4.095 3 C 0.068 3.932 4 C -0.112 4.112 5 C -0.085 4.085 6 C -0.128 4.128 7 C -0.033 4.033 8 C -0.719 4.719 9 S 2.768 3.232 10 O -0.931 6.931 11 O -0.944 6.944 12 N -0.794 5.794 13 C -0.061 4.061 14 C -0.098 4.098 15 C -0.199 4.199 16 C 0.104 3.896 17 O -0.115 6.115 18 C -0.466 4.466 19 H 0.126 0.874 20 C -0.139 4.139 21 N -0.510 5.510 22 Si 0.730 3.270 23 H -0.198 1.198 24 H -0.207 1.207 25 H -0.183 1.183 26 C -0.222 4.222 27 C -0.112 4.112 28 H 0.159 0.841 29 H 0.160 0.840 30 H 0.161 0.839 31 H 0.174 0.826 32 H 0.256 0.744 33 H 0.135 0.865 34 H 0.140 0.860 35 H 0.091 0.909 36 H 0.159 0.841 37 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -5.954 10.479 14.371 18.756 hybrid contribution 0.151 -1.239 0.565 1.370 sum -5.803 9.240 14.936 18.497 Atomic orbital electron populations 1.81231 1.11400 1.06534 1.05103 1.25706 0.92774 0.95077 0.95895 1.15337 0.83947 0.99415 0.94539 1.21298 0.94715 0.98297 0.96894 1.21438 0.93617 0.94778 0.98689 1.21605 1.01284 0.97255 0.92654 1.21062 0.91227 0.91678 0.99297 1.31109 1.06754 1.15963 1.18064 1.02727 0.73681 0.72790 0.73998 1.93578 1.61001 1.82699 1.55783 1.93629 1.59977 1.57766 1.83052 1.52779 1.17941 1.30805 1.77865 1.16934 0.99470 0.85391 1.04293 1.20585 0.99431 0.90926 0.98862 1.20063 0.98375 0.98541 1.02939 1.19222 0.90927 0.86796 0.92645 1.83598 1.37385 1.28730 1.61784 1.20801 0.99583 0.97328 1.28873 0.87355 1.24482 0.95110 0.99640 0.94675 1.69655 1.17224 1.32893 1.31275 0.86188 0.78613 0.82056 0.80106 1.19824 1.20699 1.18303 1.21215 1.04219 0.91228 1.05569 1.21488 0.95063 1.00267 0.94425 0.84074 0.83990 0.83901 0.82625 0.74413 0.86504 0.85964 0.90892 0.84113 0.83757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.37 -5.11 18.54 41.84 0.78 -4.34 16 2 C 0.22 2.77 13.18 -22.47 -0.30 2.47 16 3 C 0.07 0.79 5.73 -106.93 -0.61 0.17 16 4 C -0.09 -0.72 9.76 -39.17 -0.38 -1.10 16 5 C -0.07 -0.45 10.03 -39.65 -0.40 -0.84 16 6 C -0.11 -0.84 10.04 -39.49 -0.40 -1.23 16 7 C -0.01 -0.14 9.54 -39.64 -0.38 -0.51 16 8 C -0.63 -7.45 5.85 -39.17 -0.23 -7.68 16 9 S 2.68 36.65 5.00 -107.50 -0.54 36.11 16 10 O -0.94 -14.39 14.02 -57.17 -0.80 -15.19 16 11 O -0.95 -14.77 16.82 -57.17 -0.96 -15.73 16 12 N -1.04 -13.91 5.59 32.45 0.18 -13.73 16 13 C 0.03 0.53 6.17 -83.70 -0.52 0.01 16 14 C -0.08 -1.18 9.96 -39.40 -0.39 -1.57 16 15 C -0.18 -3.21 9.98 -39.42 -0.39 -3.60 16 16 C 0.16 3.35 6.65 -39.09 -0.26 3.09 16 17 O -0.21 -5.18 8.58 -0.06 0.00 -5.18 16 18 C -0.39 -10.36 9.90 30.87 0.31 -10.06 16 19 H 0.11 2.93 5.52 -52.49 -0.29 2.64 16 20 C 0.07 1.74 5.49 -17.52 -0.10 1.64 16 21 N -0.87 -24.13 13.96 55.48 0.77 -23.36 16 22 Si 0.91 20.62 28.62 -169.99 -4.86 15.75 16 23 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 24 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 25 H -0.26 -5.88 7.11 56.52 0.40 -5.48 16 26 C -0.20 -4.06 9.13 -39.42 -0.36 -4.42 16 27 C -0.09 -1.60 9.18 -39.40 -0.36 -1.96 16 28 H 0.14 0.76 8.06 -52.48 -0.42 0.34 16 29 H 0.14 0.49 8.06 -52.49 -0.42 0.07 16 30 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 31 H 0.16 1.48 7.33 -52.49 -0.38 1.09 16 32 H 0.42 4.84 8.95 -34.47 -0.31 4.53 16 33 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 34 H 0.12 2.02 8.06 -52.49 -0.42 1.59 16 35 H 0.28 7.17 8.31 -40.82 -0.34 6.83 16 36 H 0.14 2.97 5.70 -52.49 -0.30 2.67 16 37 H 0.14 2.44 5.70 -52.49 -0.30 2.14 16 LS Contribution 344.86 15.07 5.20 5.20 Total: -1.00 -31.96 344.86 -7.84 -39.80 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -2.83 Total: 6.27 kcal Atomic # 6 Polarization: -20.84 SS G_CDS: -4.77 Total: -25.60 kcal Atomic # 7 Polarization: -43.16 SS G_CDS: 1.73 Total: -41.42 kcal Atomic # 8 Polarization: -34.34 SS G_CDS: -1.76 Total: -36.11 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -4.86 Total: 15.75 kcal Atomic # 16 Polarization: 36.65 SS G_CDS: -0.54 Total: 36.11 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.96 -7.84 -39.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000018895592.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.868 kcal (2) G-P(sol) polarization free energy of solvation -31.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds