Wall clock time and date at job start Tue Mar 31 2020 05:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30519 * 1 3 3 Si 1.86790 * 120.00387 * 2 1 4 4 H 1.48505 * 109.47310 * 270.00299 * 3 2 1 5 5 H 1.48507 * 109.47335 * 30.00105 * 3 2 1 6 6 H 1.48502 * 109.47581 * 149.99850 * 3 2 1 7 7 C 1.40367 * 119.99608 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00081 * 180.02562 * 7 2 1 9 9 C 1.41480 * 120.00132 * 359.97438 * 7 2 1 10 10 O 1.21860 * 119.99973 * 359.97438 * 9 7 2 11 11 C 1.47625 * 120.00027 * 180.02562 * 9 7 2 12 12 N 1.32887 * 126.43351 * 0.24547 * 11 9 7 13 13 N 1.29117 * 110.47035 * 180.19768 * 12 11 9 14 14 C 1.39830 * 125.17959 * 180.36322 * 13 12 11 15 15 C 1.38968 * 120.07850 * 226.21900 * 14 13 12 16 16 C 1.38072 * 119.92366 * 179.97438 * 15 14 13 17 17 C 1.38319 * 120.07840 * 0.02562 * 16 15 14 18 18 C 1.38315 * 120.15627 * 359.97438 * 17 16 15 19 19 C 1.38078 * 120.07311 * 0.02562 * 18 17 16 20 20 C 1.35288 * 109.64319 * 0.09821 * 13 12 11 21 21 C 1.37756 * 107.01117 * 359.43631 * 20 13 12 22 22 C 1.50105 * 122.46088 * 180.92559 * 21 20 13 23 23 C 1.52877 * 109.60436 * 328.96491 * 22 21 20 24 24 C 1.50369 * 112.43122 * 46.16583 * 23 22 21 25 25 C 1.38067 * 120.00478 * 146.60465 * 24 23 22 26 26 C 1.38335 * 120.27968 * 176.49131 * 25 24 23 27 27 C 1.38356 * 120.62980 * 359.82655 * 26 25 24 28 28 C 1.38179 * 119.88255 * 0.86163 * 27 26 25 29 29 C 1.38852 * 119.63414 * 0.21299 * 28 27 26 30 30 H 0.97010 * 119.99789 * 0.02562 * 1 2 3 31 31 H 1.07995 * 120.03699 * 0.24925 * 15 14 13 32 32 H 1.08001 * 119.96441 * 179.97438 * 16 15 14 33 33 H 1.07998 * 119.92429 * 179.97438 * 17 16 15 34 34 H 1.08001 * 119.96218 * 180.02562 * 18 17 16 35 35 H 1.08004 * 120.03748 * 179.97438 * 19 18 17 36 36 H 1.08999 * 109.44919 * 208.91614 * 22 21 20 37 37 H 1.09010 * 109.42499 * 88.99025 * 22 21 20 38 38 H 1.09004 * 108.88250 * 285.40457 * 23 22 21 39 39 H 1.08999 * 108.81204 * 166.88244 * 23 22 21 40 40 H 1.07994 * 119.85850 * 356.46595 * 25 24 23 41 41 H 1.07998 * 119.68472 * 179.85489 * 26 25 24 42 42 H 1.07992 * 120.06136 * 180.88354 * 27 26 25 43 43 H 1.08003 * 120.18214 * 180.18835 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2393 1.6176 0.0000 4 1 2.4868 2.0463 -1.4001 5 1 1.4368 2.6527 0.7001 6 1 3.5368 1.4401 0.7001 7 6 2.0069 -1.2157 -0.0005 8 1 3.0870 -1.2158 -0.0001 9 6 1.2995 -2.4409 -0.0005 10 8 0.0809 -2.4408 0.0004 11 6 2.0376 -3.7194 -0.0005 12 7 3.3580 -3.8684 0.0040 13 7 3.6712 -5.1210 -0.0017 14 6 4.9753 -5.6254 0.0081 15 6 5.3336 -6.6465 -0.8638 16 6 6.6223 -7.1419 -0.8517 17 6 7.5562 -6.6234 0.0271 18 6 7.2030 -5.6071 0.8963 19 6 5.9160 -5.1069 0.8897 20 6 2.5454 -5.8711 -0.0126 21 6 1.4795 -4.9985 -0.0006 22 6 0.0539 -5.4682 0.0128 23 6 -0.0546 -6.7995 -0.7309 24 6 1.0212 -7.7704 -0.3293 25 6 0.7545 -9.1248 -0.3041 26 6 1.7589 -10.0281 -0.0060 27 6 3.0426 -9.5900 0.2672 28 6 3.3244 -8.2373 0.2605 29 6 2.3134 -7.3267 -0.0165 30 1 -0.4850 0.8402 -0.0004 31 1 4.6061 -7.0491 -1.5530 32 1 6.9014 -7.9357 -1.5288 33 1 8.5634 -7.0130 0.0347 34 1 7.9348 -5.2043 1.5809 35 1 5.6408 -4.3136 1.5689 36 1 -0.5772 -4.7265 -0.4767 37 1 -0.2746 -5.6006 1.0438 38 1 0.0208 -6.6124 -1.8021 39 1 -1.0274 -7.2427 -0.5182 40 1 -0.2426 -9.4805 -0.5177 41 1 1.5391 -11.0853 0.0133 42 1 3.8230 -10.3041 0.4848 43 1 4.3254 -7.8902 0.4701 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019897653.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:44 Heat of formation + Delta-G solvation = 92.291123 kcal Electronic energy + Delta-G solvation = -29121.052129 eV Core-core repulsion = 25290.420607 eV Total energy + Delta-G solvation = -3830.631522 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.127 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.28173 -39.22314 -39.11722 -36.47699 -35.03458 -33.07722 -32.60864 -32.00989 -30.95632 -29.95732 -28.86684 -28.30538 -26.77657 -23.93252 -23.62079 -22.94505 -22.53989 -21.76477 -20.88436 -19.00244 -18.62007 -17.90103 -16.69721 -16.19501 -15.95347 -15.73416 -15.42579 -15.16314 -14.75235 -14.49174 -14.26966 -14.09467 -13.69015 -13.60396 -13.44081 -12.86666 -12.83019 -12.72155 -12.56064 -12.15718 -11.99673 -11.82663 -11.70557 -11.40175 -11.29003 -11.16043 -10.97639 -10.90847 -10.52714 -10.36622 -10.26456 -9.85585 -9.49507 -9.34444 -9.10415 -8.92119 -8.71111 -7.90592 -7.57392 -7.52140 -6.31194 -4.86524 0.77219 1.16988 1.19979 1.40605 2.61791 2.86570 2.94293 3.15972 3.17925 3.21913 3.56833 3.91892 4.05182 4.52150 4.61881 4.70902 4.75189 4.81047 4.89758 4.92724 5.02245 5.19334 5.23249 5.29501 5.36915 5.45640 5.53337 5.61567 5.69104 5.72283 5.82132 5.84066 5.87555 6.01564 6.13099 6.15860 6.25950 6.29433 6.33458 6.37061 6.48370 6.52465 6.57091 6.64426 6.77916 6.84217 7.03854 7.23893 7.37017 7.54047 8.20713 8.64147 8.82042 8.92247 10.31799 10.53058 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.010410 B = 0.004189 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2689.185635 B = 6682.193083 C = 9171.309819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.734 5.734 2 C 0.079 3.921 3 Si 0.909 3.091 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.497 4.497 8 H 0.078 0.922 9 C 0.423 3.577 10 O -0.534 6.534 11 C 0.040 3.960 12 N -0.266 5.266 13 N -0.244 5.244 14 C 0.145 3.855 15 C -0.115 4.115 16 C -0.109 4.109 17 C -0.120 4.120 18 C -0.107 4.107 19 C -0.101 4.101 20 C 0.011 3.989 21 C -0.143 4.143 22 C -0.040 4.040 23 C -0.080 4.080 24 C -0.060 4.060 25 C -0.117 4.117 26 C -0.123 4.123 27 C -0.122 4.122 28 C -0.122 4.122 29 C 0.001 3.999 30 H 0.274 0.726 31 H 0.131 0.869 32 H 0.131 0.869 33 H 0.127 0.873 34 H 0.132 0.868 35 H 0.136 0.864 36 H 0.101 0.899 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.124 0.876 41 H 0.120 0.880 42 H 0.121 0.879 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.702 -17.716 -0.259 20.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.363 5.363 2 C -0.145 4.145 3 Si 0.732 3.268 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.529 4.529 8 H 0.096 0.904 9 C 0.318 3.682 10 O -0.421 6.421 11 C -0.118 4.118 12 N -0.096 5.096 13 N -0.023 5.023 14 C 0.054 3.946 15 C -0.135 4.135 16 C -0.127 4.127 17 C -0.138 4.138 18 C -0.125 4.125 19 C -0.121 4.121 20 C -0.111 4.111 21 C -0.152 4.152 22 C -0.078 4.078 23 C -0.117 4.117 24 C -0.061 4.061 25 C -0.135 4.135 26 C -0.141 4.141 27 C -0.140 4.140 28 C -0.141 4.141 29 C -0.001 4.001 30 H 0.085 0.915 31 H 0.149 0.851 32 H 0.149 0.851 33 H 0.145 0.855 34 H 0.149 0.851 35 H 0.154 0.846 36 H 0.119 0.881 37 H 0.088 0.912 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.142 0.858 41 H 0.138 0.862 42 H 0.139 0.861 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 10.004 -17.039 -0.251 19.760 hybrid contribution 0.065 0.296 0.017 0.303 sum 10.069 -16.743 -0.234 19.539 Atomic orbital electron populations 1.69959 1.07518 1.28153 1.30644 1.26030 0.94649 1.01058 0.92745 0.86334 0.80529 0.80672 0.79221 1.19380 1.20170 1.18458 1.20887 0.95389 0.91020 1.45593 0.90358 1.17200 0.87642 0.83577 0.79796 1.90520 1.14173 1.87171 1.50197 1.24086 0.88399 0.98179 1.01093 1.74503 1.17600 0.95955 1.21535 1.42290 1.03096 1.03893 1.53064 1.17544 0.82346 0.96779 0.97894 1.21137 0.97408 0.97107 0.97835 1.20972 0.92108 1.00302 0.99340 1.21255 0.99660 0.96893 0.95993 1.21067 0.95456 0.96723 0.99263 1.21210 0.92941 1.00202 0.97717 1.19534 0.86645 0.92309 1.12621 1.20489 0.95330 0.92045 1.07336 1.19739 0.92023 0.95127 1.00874 1.20448 0.96184 0.94169 1.00927 1.20103 0.93740 0.94332 0.97911 1.20954 0.99426 0.92073 1.01044 1.21112 0.93190 0.99374 1.00469 1.21013 0.96806 0.95088 1.01055 1.21351 0.98991 0.93104 1.00653 1.17724 0.93541 0.88460 1.00376 0.91483 0.85119 0.85089 0.85466 0.85054 0.84630 0.88080 0.91162 0.90431 0.90380 0.85781 0.86240 0.86071 0.85438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -21.08 11.72 55.57 0.65 -20.43 16 2 C 0.08 2.15 5.50 -17.31 -0.10 2.05 16 3 Si 0.91 19.86 29.56 -169.99 -5.03 14.83 16 4 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 5 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 6 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16 7 C -0.50 -14.31 9.13 -37.55 -0.34 -14.65 16 8 H 0.08 2.18 7.68 -52.49 -0.40 1.77 16 9 C 0.42 12.43 6.93 -34.52 -0.24 12.19 16 10 O -0.53 -16.75 14.12 5.05 0.07 -16.68 16 11 C 0.04 1.04 7.00 -83.09 -0.58 0.46 16 12 N -0.27 -6.36 11.52 33.18 0.38 -5.98 16 13 N -0.24 -4.95 3.41 -7.43 -0.03 -4.98 16 14 C 0.14 2.37 5.37 -83.67 -0.45 1.92 16 15 C -0.11 -1.53 6.45 -39.37 -0.25 -1.79 16 16 C -0.11 -1.10 10.04 -39.61 -0.40 -1.50 16 17 C -0.12 -1.12 10.04 -39.52 -0.40 -1.52 16 18 C -0.11 -1.16 10.04 -39.61 -0.40 -1.55 16 19 C -0.10 -1.47 9.82 -39.37 -0.39 -1.85 16 20 C 0.01 0.23 6.54 -82.79 -0.54 -0.31 16 21 C -0.14 -3.20 6.03 -104.59 -0.63 -3.83 16 22 C -0.04 -0.77 5.91 -28.23 -0.17 -0.93 16 23 C -0.08 -1.21 5.78 -28.11 -0.16 -1.38 16 24 C -0.06 -0.89 5.72 -104.12 -0.60 -1.49 16 25 C -0.12 -1.41 9.65 -39.61 -0.38 -1.79 16 26 C -0.12 -1.33 10.02 -39.50 -0.40 -1.73 16 27 C -0.12 -1.38 10.06 -39.56 -0.40 -1.78 16 28 C -0.12 -1.70 8.09 -39.38 -0.32 -2.01 16 29 C 0.00 0.01 5.59 -105.22 -0.59 -0.57 16 30 H 0.27 7.04 8.29 -40.82 -0.34 6.71 16 31 H 0.13 1.78 7.07 -52.49 -0.37 1.41 16 32 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 33 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 34 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 35 H 0.14 2.08 8.06 -52.48 -0.42 1.66 16 36 H 0.10 2.15 7.09 -51.93 -0.37 1.78 16 37 H 0.07 1.32 8.14 -51.92 -0.42 0.90 16 38 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.08 0.96 8.03 -51.93 -0.42 0.54 16 40 H 0.12 1.19 8.05 -52.49 -0.42 0.77 16 41 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 42 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 43 H 0.13 1.71 4.72 -52.48 -0.25 1.47 16 LS Contribution 360.88 15.07 5.44 5.44 Total: -1.00 -34.34 360.88 -10.97 -45.31 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -4.75 Total: 4.55 kcal Atomic # 6 Polarization: -14.35 SS G_CDS: -7.72 Total: -22.07 kcal Atomic # 7 Polarization: -32.39 SS G_CDS: 1.01 Total: -31.38 kcal Atomic # 8 Polarization: -16.75 SS G_CDS: 0.07 Total: -16.68 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.03 Total: 14.83 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.34 -10.97 -45.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019897653.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.598 kcal (2) G-P(sol) polarization free energy of solvation -34.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds