Wall clock time and date at job start Tue Mar 31 2020 06:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 120.00193 * 2 1 4 4 H 1.48498 * 109.47108 * 240.00424 * 3 2 1 5 5 H 1.48501 * 109.47010 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47098 * 120.00357 * 3 2 1 7 7 C 1.38819 * 119.99751 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99575 * 195.13483 * 7 2 1 9 9 N 1.36931 * 120.00191 * 15.12890 * 7 2 1 10 10 C 1.47072 * 120.88030 * 31.28424 * 9 7 2 11 11 C 1.53248 * 108.52066 * 128.79670 * 10 9 7 12 12 N 1.46895 * 109.36161 * 53.81230 * 11 10 9 13 13 C 1.39677 * 110.99890 * 172.75969 * 12 11 10 14 14 C 1.38932 * 120.06903 * 66.21059 * 13 12 11 15 15 C 1.38081 * 119.92283 * 180.02562 * 14 13 12 16 16 C 1.38312 * 120.07497 * 359.97438 * 15 14 13 17 17 C 1.50700 * 119.92835 * 179.97438 * 16 15 14 18 18 F 1.39908 * 109.46730 * 359.97438 * 17 16 15 19 19 F 1.39893 * 109.47305 * 119.99525 * 17 16 15 20 20 F 1.39901 * 109.47064 * 240.00305 * 17 16 15 21 21 C 1.38262 * 120.14807 * 359.97438 * 16 15 14 22 22 C 1.38124 * 120.07699 * 359.72924 * 21 16 15 23 23 N 1.48002 * 120.04085 * 180.27412 * 22 21 16 24 24 O 1.21800 * 120.00163 * 5.55118 * 23 22 21 25 25 O 1.21806 * 120.00210 * 185.54826 * 23 22 21 26 26 C 1.46891 * 111.27594 * 296.94159 * 12 11 10 27 27 C 1.47084 * 120.87896 * 211.26448 * 9 7 2 28 28 H 0.96996 * 119.99848 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.63260 * 9.08740 * 10 9 7 30 30 H 1.09002 * 109.63098 * 248.50083 * 10 9 7 31 31 H 1.08999 * 109.49437 * 173.79023 * 11 10 9 32 32 H 1.09002 * 109.48797 * 293.84473 * 11 10 9 33 33 H 1.07997 * 120.04311 * 0.02562 * 14 13 12 34 34 H 1.08000 * 119.96362 * 179.97438 * 15 14 13 35 35 H 1.08007 * 119.96373 * 180.02562 * 21 16 15 36 36 H 1.08999 * 109.47021 * 303.10376 * 26 12 11 37 37 H 1.08996 * 109.51875 * 183.05162 * 26 12 11 38 38 H 1.08995 * 109.62912 * 350.91877 * 27 9 7 39 39 H 1.08999 * 109.62632 * 111.50002 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0622 -1.2185 0.2437 9 7 1.3612 -2.3674 -0.3106 10 6 0.2335 -2.3751 -1.2547 11 6 0.4941 -3.4500 -2.3155 12 7 0.7584 -4.7341 -1.6529 13 6 0.8393 -5.7711 -2.5852 14 6 1.8792 -5.7996 -3.5061 15 6 1.9560 -6.8258 -4.4268 16 6 0.9995 -7.8249 -4.4325 17 6 1.0862 -8.9430 -5.4391 18 9 2.2089 -8.7527 -6.2519 19 9 1.1969 -10.1661 -4.7692 20 9 -0.0670 -8.9477 -6.2313 21 6 -0.0361 -7.8000 -3.5167 22 6 -0.1155 -6.7797 -2.5891 23 7 -1.2210 -6.7572 -1.6053 24 8 -2.0029 -7.6892 -1.5464 25 8 -1.3487 -5.8067 -0.8544 26 6 1.9735 -4.6693 -0.8301 27 6 1.7735 -3.6444 0.2915 28 1 -0.4850 0.8400 0.0004 29 1 0.1508 -1.3998 -1.7343 30 1 -0.6892 -2.6034 -0.7212 31 1 -0.3805 -3.5458 -2.9588 32 1 1.3582 -3.1661 -2.9162 33 1 2.6267 -5.0201 -3.5020 34 1 2.7638 -6.8484 -5.1432 35 1 -0.7812 -8.5819 -3.5236 36 1 2.8172 -4.3686 -1.4512 37 1 2.1722 -5.6492 -0.3962 38 1 2.7089 -3.5083 0.8342 39 1 0.9988 -3.9947 0.9736 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020224094.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:11 Heat of formation + Delta-G solvation = -73.571040 kcal Electronic energy + Delta-G solvation = -30959.505531 eV Core-core repulsion = 26071.257020 eV Total energy + Delta-G solvation = -4888.248511 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.109 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -50.62486 -48.14844 -48.06354 -42.04421 -40.33216 -38.05628 -36.20112 -34.80612 -32.50081 -31.98458 -30.72021 -30.10543 -27.20258 -26.65752 -25.22411 -23.66874 -22.84596 -22.73197 -21.78910 -19.73478 -19.39596 -18.93799 -18.89217 -18.27089 -17.58944 -17.49048 -17.26252 -16.41280 -15.87505 -15.01951 -14.96174 -14.87445 -14.81527 -14.69815 -14.50624 -14.28372 -14.22098 -14.15503 -13.71730 -13.67696 -13.28036 -13.15430 -12.95214 -12.46110 -12.18560 -11.71680 -11.26301 -11.22529 -10.93987 -10.82397 -10.80368 -10.77253 -10.52860 -10.34988 -10.04101 -9.95357 -9.81141 -9.59844 -8.62030 -8.36367 -6.71400 -5.86189 -3.32944 -0.28645 0.19010 1.29066 1.44818 2.13555 2.66781 3.14378 3.32996 3.39353 3.39917 3.49081 3.51687 3.91596 4.10476 4.22462 4.35586 4.42549 4.56047 4.87567 4.98138 5.21173 5.26725 5.31467 5.41910 5.54350 5.65546 5.70718 5.83956 5.90948 6.03280 6.31635 6.44711 6.52546 6.78520 6.99018 7.19515 7.33746 7.55693 7.72676 7.91244 8.36926 9.12490 9.73951 10.34927 11.22742 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.018716 B = 0.002964 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.682929 B = 9443.251816 C =10262.606597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.009 3.991 3 Si 0.903 3.097 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.263 4.263 8 H 0.064 0.936 9 N -0.592 5.592 10 C 0.183 3.817 11 C 0.045 3.955 12 N -0.496 5.496 13 C 0.206 3.794 14 C -0.154 4.154 15 C -0.017 4.017 16 C -0.202 4.202 17 C 0.518 3.482 18 F -0.173 7.173 19 F -0.172 7.172 20 F -0.172 7.172 21 C -0.003 4.003 22 C -0.035 4.035 23 N 0.025 4.975 24 O -0.204 6.204 25 O -0.070 6.070 26 C 0.048 3.952 27 C 0.150 3.850 28 H 0.256 0.744 29 H 0.086 0.914 30 H 0.040 0.960 31 H 0.063 0.937 32 H 0.036 0.964 33 H 0.157 0.843 34 H 0.154 0.846 35 H 0.162 0.838 36 H 0.039 0.961 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.867 -16.688 -11.742 20.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.190 4.190 3 Si 0.732 3.268 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.208 1.208 7 C -0.392 4.392 8 H 0.082 0.918 9 N -0.315 5.315 10 C 0.057 3.943 11 C -0.081 4.081 12 N -0.219 5.219 13 C 0.109 3.891 14 C -0.175 4.175 15 C -0.036 4.036 16 C -0.204 4.204 17 C 0.463 3.537 18 F -0.154 7.154 19 F -0.153 7.153 20 F -0.153 7.153 21 C -0.023 4.023 22 C -0.120 4.120 23 N 0.549 4.451 24 O -0.405 6.405 25 O -0.306 6.306 26 C -0.079 4.079 27 C 0.024 3.976 28 H 0.066 0.934 29 H 0.104 0.896 30 H 0.058 0.942 31 H 0.082 0.918 32 H 0.054 0.946 33 H 0.174 0.826 34 H 0.172 0.828 35 H 0.179 0.821 36 H 0.057 0.943 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 3.840 -16.763 -11.941 20.936 hybrid contribution 0.800 0.746 -0.533 1.217 sum 4.641 -16.017 -12.474 20.825 Atomic orbital electron populations 1.70001 1.05239 1.25862 1.52900 1.25161 0.95296 0.98492 1.00092 0.86382 0.78929 0.83340 0.78117 1.21050 1.21549 1.20788 1.19070 0.91808 0.84327 1.44010 0.91815 1.44037 1.37260 1.02533 1.47680 1.20823 0.90490 0.94562 0.88430 1.23078 0.99222 0.87544 0.98294 1.59968 1.38632 1.03653 1.19637 1.19218 0.89314 0.90874 0.89692 1.21973 0.99987 1.00155 0.95393 1.21298 0.95857 0.90358 0.96042 1.19782 1.00677 0.99078 1.00864 1.17954 0.73986 0.81630 0.80095 1.93189 1.52598 1.95060 1.74571 1.93250 1.95719 1.46238 1.80110 1.93253 1.49813 1.96611 1.75649 1.20560 0.96142 0.95917 0.89631 1.21035 0.93691 1.00139 0.97106 1.43244 1.00628 1.00433 1.00845 1.94515 1.39654 1.29562 1.76721 1.94735 1.76516 1.24408 1.34892 1.22842 0.87974 1.00618 0.96464 1.20973 0.98681 0.86073 0.91913 0.93362 0.89560 0.94180 0.91844 0.94555 0.82557 0.82820 0.82053 0.94284 0.91798 0.92015 0.94698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.14 11.39 55.49 0.63 -24.51 16 2 C 0.01 0.25 4.94 -17.43 -0.09 0.17 16 3 Si 0.90 20.79 29.58 -169.99 -5.03 15.76 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.26 -6.83 9.59 -15.06 -0.14 -6.97 16 8 H 0.06 1.62 7.87 -52.48 -0.41 1.21 16 9 N -0.59 -13.97 3.01 -172.01 -0.52 -14.49 16 10 C 0.18 4.11 5.37 -3.60 -0.02 4.09 16 11 C 0.04 0.78 5.33 -3.70 -0.02 0.77 16 12 N -0.50 -8.04 2.49 -170.82 -0.43 -8.47 16 13 C 0.21 2.76 4.65 -83.78 -0.39 2.37 16 14 C -0.15 -1.59 8.74 -39.38 -0.34 -1.93 16 15 C -0.02 -0.14 9.42 -39.61 -0.37 -0.51 16 16 C -0.20 -1.86 5.37 -104.59 -0.56 -2.42 16 17 C 0.52 4.52 3.31 36.01 0.12 4.64 16 18 F -0.17 -1.43 15.97 2.25 0.04 -1.40 16 19 F -0.17 -1.60 17.24 2.25 0.04 -1.56 16 20 F -0.17 -1.62 17.23 2.25 0.04 -1.58 16 21 C 0.00 -0.03 9.10 -39.61 -0.36 -0.39 16 22 C -0.04 -0.48 6.86 -79.76 -0.55 -1.03 16 23 N 0.02 0.40 4.45 34.06 0.15 0.56 16 24 O -0.20 -3.35 18.46 -29.46 -0.54 -3.89 16 25 O -0.07 -1.30 17.12 -29.46 -0.50 -1.81 16 26 C 0.05 0.77 5.22 -3.70 -0.02 0.75 16 27 C 0.15 2.97 6.69 -3.60 -0.02 2.94 16 28 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 29 H 0.09 2.14 6.43 -51.93 -0.33 1.81 16 30 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 31 H 0.06 1.05 8.09 -51.93 -0.42 0.63 16 32 H 0.04 0.61 7.72 -51.93 -0.40 0.21 16 33 H 0.16 1.46 7.18 -52.49 -0.38 1.09 16 34 H 0.15 0.89 7.15 -52.49 -0.38 0.51 16 35 H 0.16 1.56 7.62 -52.48 -0.40 1.16 16 36 H 0.04 0.59 7.30 -51.93 -0.38 0.21 16 37 H 0.06 0.91 8.09 -51.93 -0.42 0.49 16 38 H 0.06 1.16 7.95 -51.93 -0.41 0.75 16 39 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 342.89 15.07 5.17 5.17 Total: -1.00 -28.97 342.89 -7.64 -36.61 By element: Atomic # 1 Polarization: 1.05 SS G_CDS: -3.91 Total: -2.86 kcal Atomic # 6 Polarization: 5.24 SS G_CDS: -2.77 Total: 2.47 kcal Atomic # 7 Polarization: -46.75 SS G_CDS: -0.16 Total: -46.91 kcal Atomic # 8 Polarization: -4.65 SS G_CDS: -1.05 Total: -5.70 kcal Atomic # 9 Polarization: -4.65 SS G_CDS: 0.11 Total: -4.53 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.03 Total: 15.76 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -28.97 -7.64 -36.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020224094.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.961 kcal (2) G-P(sol) polarization free energy of solvation -28.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds