Wall clock time and date at job start Tue Mar 31 2020 05:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35958 * 116.99556 * 2 1 4 4 C 1.39221 * 119.88666 * 359.97366 * 3 2 1 5 5 C 1.37825 * 120.61947 * 179.46103 * 4 3 2 6 6 C 1.38914 * 120.03788 * 0.84270 * 5 4 3 7 7 O 1.35094 * 120.65168 * 179.15788 * 6 5 4 8 8 C 1.34167 * 121.49589 * 180.02562 * 7 6 5 9 9 O 1.21776 * 119.16349 * 179.97438 * 8 7 6 10 10 C 1.41178 * 121.68221 * 359.97125 * 8 7 6 11 11 C 1.35705 * 119.79171 * 0.03184 * 10 8 7 12 12 C 1.50705 * 120.90616 * 179.97438 * 11 10 8 13 13 N 1.46899 * 109.47310 * 108.44350 * 12 11 10 14 14 C 1.46897 * 110.99682 * 183.21716 * 13 12 11 15 15 C 1.53240 * 109.34009 * 187.25686 * 14 13 12 16 16 N 1.47082 * 108.52141 * 306.17070 * 15 14 13 17 17 C 1.36934 * 120.88342 * 231.19044 * 16 15 14 18 18 H 1.07995 * 119.99961 * 30.58261 * 17 16 15 19 19 C 1.38810 * 119.99787 * 210.31041 * 17 16 15 20 20 N 1.31621 * 119.99934 * 15.34595 * 19 17 16 21 21 Si 1.86801 * 120.00059 * 195.34584 * 19 17 16 22 22 H 1.48503 * 109.46687 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47197 * 119.99739 * 21 19 17 24 24 H 1.48498 * 109.47378 * 240.00435 * 21 19 17 25 25 C 1.47084 * 118.23360 * 51.45600 * 16 15 14 26 26 C 1.46899 * 111.00039 * 307.51748 * 13 12 11 27 27 C 1.40565 * 119.52903 * 359.44497 * 6 5 4 28 28 C 1.38096 * 119.87953 * 179.97438 * 3 2 1 29 29 H 1.09004 * 109.47384 * 299.99983 * 1 2 3 30 30 H 1.08996 * 109.47333 * 60.00513 * 1 2 3 31 31 H 1.09003 * 109.47105 * 180.02562 * 1 2 3 32 32 H 1.07999 * 119.69128 * 0.04612 * 4 3 2 33 33 H 1.08003 * 119.98267 * 180.02562 * 5 4 3 34 34 H 1.07996 * 120.10249 * 180.02562 * 10 8 7 35 35 H 1.08996 * 109.46733 * 348.44331 * 12 11 10 36 36 H 1.08998 * 109.46899 * 228.45049 * 12 11 10 37 37 H 1.08996 * 109.49689 * 67.29693 * 14 13 12 38 38 H 1.09002 * 109.51747 * 307.22446 * 14 13 12 39 39 H 1.08997 * 109.63230 * 186.46136 * 15 14 13 40 40 H 1.09003 * 109.78806 * 65.97070 * 15 14 13 41 41 H 0.97003 * 119.99789 * 179.97438 * 20 19 17 42 42 H 1.08993 * 109.63061 * 68.25759 * 25 16 15 43 43 H 1.09001 * 109.62403 * 188.83720 * 25 16 15 44 44 H 1.08997 * 109.49345 * 292.70758 * 26 13 12 45 45 H 1.08994 * 109.48947 * 52.76619 * 26 13 12 46 46 H 1.08008 * 120.21554 * 359.97438 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2855 2.3775 -0.0006 5 6 1.8953 3.6134 0.0106 6 6 3.2814 3.7050 0.0048 7 8 3.8920 4.9101 -0.0014 8 6 5.2293 5.0182 -0.0076 9 8 5.7350 6.1260 -0.0136 10 6 6.0652 3.8806 -0.0071 11 6 5.5154 2.6399 -0.0011 12 6 6.3840 1.4083 -0.0010 13 7 6.3137 0.7595 1.3151 14 6 7.2085 -0.4038 1.3768 15 6 6.9736 -1.1554 2.6915 16 7 7.1124 -0.2043 3.8047 17 6 7.9308 -0.4805 4.8673 18 1 8.8156 -1.0831 4.7251 19 6 7.6260 0.0188 6.1261 20 7 6.4227 0.4916 6.3729 21 14 8.9235 0.0196 7.4699 22 1 10.1837 -0.5619 6.9415 23 1 9.1709 1.4135 7.9184 24 1 8.4475 -0.7928 8.6182 25 6 6.3443 1.0488 3.7491 26 6 6.6086 1.7163 2.3900 27 6 4.0533 2.5303 -0.0005 28 6 3.4254 1.2809 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 0.2075 2.3129 -0.0002 33 1 1.2952 4.5114 0.0105 34 1 7.1389 3.9973 -0.0117 35 1 7.4152 1.6911 -0.2122 36 1 6.0330 0.7163 -0.7666 37 1 8.2446 -0.0688 1.3296 38 1 7.0020 -1.0671 0.5369 39 1 7.7116 -1.9509 2.7954 40 1 5.9710 -1.5830 2.6981 41 1 6.2096 0.8402 7.2527 42 1 5.2814 0.8317 3.8534 43 1 6.6661 1.7114 4.5525 44 1 7.6531 2.0219 2.3286 45 1 5.9669 2.5909 2.2845 46 1 4.0152 0.3761 0.0014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020259468.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:09 Heat of formation + Delta-G solvation = -22.178755 kcal Electronic energy + Delta-G solvation = -30705.135233 eV Core-core repulsion = 26562.231005 eV Total energy + Delta-G solvation = -4142.904228 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.95919 -40.00604 -38.57763 -38.06756 -36.62843 -35.48975 -33.65726 -31.26487 -31.04062 -29.98998 -29.61466 -28.08682 -27.54081 -25.37318 -23.92681 -23.60235 -22.84977 -22.61342 -21.26408 -19.59321 -19.25465 -18.76874 -17.44309 -16.88945 -16.75995 -16.70211 -15.91509 -15.84448 -15.39028 -15.28231 -14.63822 -14.60097 -14.52467 -14.00452 -13.63399 -13.51973 -13.41468 -13.37367 -13.15527 -13.10358 -12.94771 -12.45917 -12.39387 -12.18605 -11.79189 -11.56949 -11.24860 -11.15038 -11.10434 -10.79387 -10.56623 -10.44860 -10.30296 -10.25857 -10.08443 -9.80975 -9.65369 -8.80804 -8.53945 -8.16226 -8.00441 -6.65482 -5.80868 -3.25996 0.06599 0.96382 1.40019 2.38610 2.74185 3.01296 3.35836 3.43845 3.45561 3.52946 4.00040 4.07613 4.24472 4.35917 4.48184 4.51732 4.74476 4.84595 4.90664 4.98620 5.10121 5.16407 5.23584 5.36008 5.37045 5.42577 5.51223 5.59136 5.73230 5.77554 5.81645 5.90657 5.95013 6.03046 6.05103 6.13298 6.22070 6.25543 6.46634 6.61669 6.87998 7.05572 7.15168 7.17226 7.37432 7.45077 7.54569 7.62374 7.78734 8.42830 9.18746 9.81140 10.41189 11.27913 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.010373 B = 0.003539 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2698.743665 B = 7908.963527 C = 9085.807511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.310 6.310 3 C 0.104 3.896 4 C -0.153 4.153 5 C -0.098 4.098 6 C 0.106 3.894 7 O -0.272 6.272 8 C 0.514 3.486 9 O -0.472 6.472 10 C -0.250 4.250 11 C 0.049 3.951 12 C 0.077 3.923 13 N -0.522 5.522 14 C 0.044 3.956 15 C 0.149 3.851 16 N -0.594 5.594 17 C -0.256 4.256 18 H 0.065 0.935 19 C 0.006 3.994 20 N -0.901 5.901 21 Si 0.901 3.099 22 H -0.277 1.277 23 H -0.289 1.289 24 H -0.289 1.289 25 C 0.183 3.817 26 C 0.031 3.969 27 C -0.099 4.099 28 C -0.066 4.066 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.101 0.899 32 H 0.142 0.858 33 H 0.144 0.856 34 H 0.162 0.838 35 H 0.052 0.948 36 H 0.094 0.906 37 H 0.032 0.968 38 H 0.065 0.935 39 H 0.057 0.943 40 H 0.027 0.973 41 H 0.254 0.746 42 H 0.028 0.972 43 H 0.083 0.917 44 H 0.030 0.970 45 H 0.058 0.942 46 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.104 1.052 -17.342 20.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.223 6.223 3 C 0.058 3.942 4 C -0.172 4.172 5 C -0.116 4.116 6 C 0.062 3.938 7 O -0.184 6.184 8 C 0.363 3.637 9 O -0.361 6.361 10 C -0.270 4.270 11 C 0.047 3.953 12 C -0.050 4.050 13 N -0.248 5.248 14 C -0.085 4.085 15 C 0.022 3.978 16 N -0.317 5.317 17 C -0.386 4.386 18 H 0.082 0.918 19 C -0.193 4.193 20 N -0.545 5.545 21 Si 0.731 3.269 22 H -0.202 1.202 23 H -0.215 1.215 24 H -0.216 1.216 25 C 0.057 3.943 26 C -0.098 4.098 27 C -0.100 4.100 28 C -0.084 4.084 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.120 0.880 32 H 0.160 0.840 33 H 0.162 0.838 34 H 0.179 0.821 35 H 0.070 0.930 36 H 0.112 0.888 37 H 0.050 0.950 38 H 0.083 0.917 39 H 0.075 0.925 40 H 0.045 0.955 41 H 0.064 0.936 42 H 0.046 0.954 43 H 0.101 0.899 44 H 0.048 0.952 45 H 0.076 0.924 46 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -11.408 1.429 -17.095 20.602 hybrid contribution 1.258 0.463 0.752 1.537 sum -10.151 1.892 -16.343 19.332 Atomic orbital electron populations 1.23098 0.78310 1.04275 1.01271 1.86151 1.21348 1.26002 1.88803 1.18863 0.92123 0.84528 0.98649 1.21229 1.00561 0.91071 1.04296 1.20207 0.90386 0.98577 1.02456 1.18948 0.92055 0.81252 1.01578 1.83507 1.25357 1.31478 1.78022 1.19128 0.78722 0.90590 0.75270 1.90965 1.68890 1.28955 1.47244 1.22496 1.02239 0.91193 1.11079 1.21486 0.91833 0.95523 0.86453 1.21283 0.96603 0.92343 0.94794 1.62176 1.53760 1.08502 1.00326 1.22679 0.93592 0.91960 1.00251 1.20975 0.98656 0.91814 0.86327 1.44095 1.51953 1.15608 1.20050 1.19184 1.01543 1.31587 0.86261 0.91752 1.25116 0.95814 1.01373 0.97006 1.70023 1.17893 1.45049 1.21537 0.86249 0.81274 0.77410 0.81985 1.20239 1.21532 1.21631 1.20867 0.94743 0.87760 0.90931 1.23077 0.98118 0.94292 0.94317 1.18642 0.92404 0.92492 1.06503 1.20462 0.91427 0.97503 0.99054 0.92430 0.92691 0.88029 0.84046 0.83807 0.82090 0.93032 0.88833 0.95008 0.91676 0.92460 0.95538 0.93613 0.95388 0.89872 0.95211 0.92374 0.82634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.31 -3.33 10.49 -19.61 -0.21 -3.54 16 3 C 0.10 1.16 6.68 -39.27 -0.26 0.90 16 4 C -0.15 -1.42 9.01 -39.37 -0.35 -1.78 16 5 C -0.10 -1.01 9.99 -39.48 -0.39 -1.40 16 6 C 0.11 1.37 6.76 -38.45 -0.26 1.11 16 7 O -0.27 -4.00 9.82 -20.85 -0.20 -4.20 16 8 C 0.51 7.99 7.89 31.85 0.25 8.24 16 9 O -0.47 -8.62 17.91 -19.58 -0.35 -8.97 16 10 C -0.25 -3.37 9.10 -39.37 -0.36 -3.73 16 11 C 0.05 0.63 3.88 -102.15 -0.40 0.23 16 12 C 0.08 0.95 4.47 -4.97 -0.02 0.93 16 13 N -0.52 -8.33 4.47 -235.47 -1.05 -9.38 16 14 C 0.04 0.72 5.62 -3.70 -0.02 0.69 16 15 C 0.15 3.01 6.69 -3.60 -0.02 2.99 16 16 N -0.59 -14.67 3.01 -171.73 -0.52 -15.19 16 17 C -0.26 -6.96 9.60 -15.06 -0.14 -7.10 16 18 H 0.06 1.72 7.87 -52.49 -0.41 1.31 16 19 C 0.01 0.17 4.95 -17.43 -0.09 0.08 16 20 N -0.90 -26.15 11.31 55.49 0.63 -25.52 16 21 Si 0.90 21.61 29.58 -169.99 -5.03 16.58 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 C 0.18 4.36 5.41 -3.36 -0.02 4.34 16 26 C 0.03 0.58 5.34 -3.46 -0.02 0.57 16 27 C -0.10 -1.29 5.87 -105.04 -0.62 -1.91 16 28 C -0.07 -0.81 9.35 -39.04 -0.36 -1.18 16 29 H 0.06 0.33 7.65 -51.93 -0.40 -0.07 16 30 H 0.05 0.26 7.65 -51.93 -0.40 -0.14 16 31 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.14 0.88 6.26 -52.49 -0.33 0.55 16 33 H 0.14 1.16 8.06 -52.48 -0.42 0.74 16 34 H 0.16 1.97 7.99 -52.49 -0.42 1.55 16 35 H 0.05 0.60 7.95 -51.93 -0.41 0.19 16 36 H 0.09 0.96 7.63 -51.93 -0.40 0.57 16 37 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.86 8.11 -51.93 -0.42 0.44 16 39 H 0.06 1.12 7.95 -51.93 -0.41 0.70 16 40 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 42 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.08 2.22 6.34 -51.93 -0.33 1.90 16 44 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.06 1.06 6.28 -51.93 -0.33 0.74 16 46 H 0.16 1.94 6.81 -52.48 -0.36 1.58 16 LS Contribution 373.90 15.07 5.63 5.63 Total: -1.00 -32.61 373.90 -9.48 -42.09 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: -6.28 Total: -1.65 kcal Atomic # 6 Polarization: 6.25 SS G_CDS: -2.10 Total: 4.15 kcal Atomic # 7 Polarization: -49.15 SS G_CDS: -0.94 Total: -50.09 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: -0.76 Total: -16.71 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.03 Total: 16.58 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.61 -9.48 -42.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020259468.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.909 kcal (2) G-P(sol) polarization free energy of solvation -32.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds