Wall clock time and date at job start Tue Mar 31 2020 06:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 119.99860 * 2 1 4 4 H 1.48495 * 109.47483 * 274.98633 * 3 2 1 5 5 H 1.48501 * 109.47219 * 34.99068 * 3 2 1 6 6 H 1.48501 * 109.47150 * 154.98496 * 3 2 1 7 7 C 1.37878 * 119.99754 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99541 * 185.23776 * 7 2 1 9 9 C 1.50694 * 120.00356 * 5.24439 * 7 2 1 10 10 N 1.46908 * 109.46977 * 183.38569 * 9 7 2 11 11 C 1.46898 * 110.99823 * 166.55720 * 10 9 7 12 12 C 1.50695 * 109.47413 * 293.95332 * 11 10 9 13 13 C 1.38233 * 120.00275 * 89.99900 * 12 11 10 14 14 C 1.38244 * 120.00344 * 179.97438 * 13 12 11 15 15 C 1.38238 * 119.99500 * 0.08741 * 14 13 12 16 16 C 1.38234 * 120.00030 * 359.86928 * 15 14 13 17 17 C 1.38233 * 120.00247 * 0.08668 * 16 15 14 18 18 C 1.46901 * 110.99769 * 290.50987 * 10 9 7 19 19 C 1.50697 * 109.47021 * 160.52621 * 18 10 9 20 20 O 1.34022 * 119.56643 * 275.37529 * 19 18 10 21 21 C 1.33780 * 122.05961 * 179.75272 * 20 19 18 22 22 C 1.50698 * 119.48420 * 180.24705 * 21 20 19 23 23 O 1.42895 * 109.47039 * 265.48169 * 22 21 20 24 24 C 1.34848 * 121.02884 * 0.51970 * 21 20 19 25 25 C 1.41730 * 119.01787 * 359.75314 * 24 21 20 26 26 O 1.22168 * 120.92185 * 180.02562 * 25 24 21 27 27 C 1.35107 * 119.57650 * 95.64383 * 19 18 10 28 28 O 1.36085 * 120.55574 * 359.96108 * 27 19 18 29 29 H 0.96991 * 120.00305 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.47369 * 63.38533 * 9 7 2 31 31 H 1.09000 * 109.47119 * 303.38167 * 9 7 2 32 32 H 1.08997 * 109.47341 * 173.95062 * 11 10 9 33 33 H 1.09005 * 109.47473 * 53.94909 * 11 10 9 34 34 H 1.07998 * 120.00175 * 359.70086 * 13 12 11 35 35 H 1.08000 * 120.00236 * 179.97438 * 14 13 12 36 36 H 1.07995 * 119.99516 * 179.97438 * 15 14 13 37 37 H 1.08002 * 119.99553 * 180.02562 * 16 15 14 38 38 H 1.08000 * 120.00026 * 179.97438 * 17 16 15 39 39 H 1.09003 * 109.47241 * 280.52284 * 18 10 9 40 40 H 1.08995 * 109.47134 * 40.52273 * 18 10 9 41 41 H 1.08993 * 109.47377 * 25.48921 * 22 21 20 42 42 H 1.09006 * 109.46702 * 145.48733 * 22 21 20 43 43 H 0.96702 * 114.00054 * 180.02562 * 23 22 21 44 44 H 1.08000 * 120.48737 * 179.76665 * 24 21 20 45 45 H 0.96704 * 114.00817 * 89.99681 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3913 2.1073 -1.3947 5 1 1.5033 2.6199 0.8029 6 1 3.5954 1.4121 0.5920 7 6 2.0045 -1.1941 -0.0005 8 1 3.0812 -1.1960 0.0849 9 6 1.2558 -2.4964 -0.1204 10 7 2.2010 -3.6161 -0.0150 11 6 1.4919 -4.8857 0.1925 12 6 0.8085 -4.8659 1.5354 13 6 -0.4853 -4.3919 1.6456 14 6 -1.1125 -4.3741 2.8775 15 6 -0.4450 -4.8288 3.9994 16 6 0.8485 -5.3036 3.8890 17 6 1.4753 -5.3222 2.6571 18 6 3.0692 -3.6852 -1.1980 19 6 4.2984 -4.4938 -0.8723 20 8 5.3453 -3.8982 -0.2846 21 6 6.4590 -4.5690 0.0309 22 6 7.5994 -3.8422 0.6959 23 8 8.5328 -3.4111 -0.2965 24 6 6.5791 -5.8841 -0.2419 25 6 5.5007 -6.5577 -0.8680 26 8 5.5719 -7.7487 -1.1305 27 6 4.3330 -5.8086 -1.1815 28 8 3.2683 -6.4061 -1.7825 29 1 -0.4850 0.8399 0.0004 30 1 0.7502 -2.5373 -1.0851 31 1 0.5187 -2.5666 0.6795 32 1 2.2048 -5.7096 0.1597 33 1 0.7470 -5.0184 -0.5922 34 1 -1.0048 -4.0312 0.7701 35 1 -2.1232 -4.0034 2.9636 36 1 -0.9348 -4.8145 4.9618 37 1 1.3698 -5.6592 4.7655 38 1 2.4860 -5.6928 2.5709 39 1 2.5293 -4.1590 -2.0178 40 1 3.3642 -2.6778 -1.4914 41 1 7.2140 -2.9757 1.2331 42 1 8.0977 -4.5121 1.3967 43 1 9.2949 -2.9351 0.0607 44 1 7.4836 -6.4162 0.0132 45 1 3.2982 -6.3836 -2.7488 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020366969.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:56 Heat of formation + Delta-G solvation = -81.549834 kcal Electronic energy + Delta-G solvation = -30703.015447 eV Core-core repulsion = 26459.818034 eV Total energy + Delta-G solvation = -4243.197413 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.05304 -39.05042 -38.77790 -37.64877 -37.08621 -36.25644 -32.98902 -32.71994 -31.93596 -30.78268 -30.44471 -28.17037 -27.12766 -26.15897 -24.27168 -23.19676 -22.40195 -22.01953 -21.33109 -20.01270 -19.04551 -18.38456 -18.01943 -16.79928 -16.50759 -16.36148 -16.30450 -15.70738 -15.10330 -15.02298 -14.85843 -14.60321 -14.52122 -14.43434 -14.02428 -13.94340 -13.64781 -13.45740 -13.16305 -12.98689 -12.53488 -12.36892 -12.19478 -12.06946 -11.83798 -11.50235 -11.23157 -11.05832 -10.79252 -10.70276 -10.58051 -10.56786 -10.46849 -10.02879 -9.63988 -9.38215 -9.30800 -8.54849 -8.49665 -8.37051 -8.26972 -7.52134 -6.11214 -4.11937 0.80526 1.00912 1.81021 1.87597 2.12022 3.25250 3.32167 3.32900 3.35971 3.86797 3.95343 4.17644 4.37064 4.44642 4.49964 4.75680 4.77975 4.95294 5.01686 5.24807 5.26713 5.27431 5.31541 5.38554 5.45084 5.53710 5.64455 5.73146 5.82132 5.97009 6.00672 6.09339 6.13278 6.16061 6.47332 6.50598 6.87696 6.93588 7.02546 7.08276 7.13266 7.18144 7.20878 7.46152 7.49107 7.68426 7.88614 7.90598 8.01222 8.37266 8.93978 9.51775 10.99441 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.007310 B = 0.004743 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3829.393941 B = 5901.864717 C = 8122.576964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.895 3.105 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.512 4.512 8 H 0.064 0.936 9 C 0.186 3.814 10 N -0.521 5.521 11 C 0.086 3.914 12 C -0.062 4.062 13 C -0.097 4.097 14 C -0.121 4.121 15 C -0.128 4.128 16 C -0.128 4.128 17 C -0.101 4.101 18 C 0.102 3.898 19 C 0.147 3.853 20 O -0.182 6.182 21 C 0.134 3.866 22 C 0.126 3.874 23 O -0.561 6.561 24 C -0.286 4.286 25 C 0.387 3.613 26 O -0.493 6.493 27 C -0.093 4.093 28 O -0.458 6.458 29 H 0.262 0.738 30 H -0.010 1.010 31 H 0.055 0.945 32 H 0.080 0.920 33 H 0.037 0.963 34 H 0.121 0.879 35 H 0.117 0.883 36 H 0.114 0.886 37 H 0.114 0.886 38 H 0.114 0.886 39 H 0.073 0.927 40 H 0.114 0.886 41 H 0.081 0.919 42 H 0.090 0.910 43 H 0.392 0.608 44 H 0.157 0.843 45 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.587 -7.804 2.383 12.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.142 4.142 3 Si 0.723 3.277 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.550 4.550 8 H 0.082 0.918 9 C 0.062 3.938 10 N -0.246 5.246 11 C -0.041 4.041 12 C -0.062 4.062 13 C -0.116 4.116 14 C -0.139 4.139 15 C -0.146 4.146 16 C -0.146 4.146 17 C -0.120 4.120 18 C -0.026 4.026 19 C 0.097 3.903 20 O -0.082 6.082 21 C 0.085 3.915 22 C 0.048 3.952 23 O -0.369 6.369 24 C -0.307 4.307 25 C 0.277 3.723 26 O -0.380 6.380 27 C -0.142 4.142 28 O -0.266 6.266 29 H 0.071 0.929 30 H 0.008 0.992 31 H 0.073 0.927 32 H 0.099 0.901 33 H 0.056 0.944 34 H 0.139 0.861 35 H 0.135 0.865 36 H 0.132 0.868 37 H 0.132 0.868 38 H 0.132 0.868 39 H 0.090 0.910 40 H 0.132 0.868 41 H 0.099 0.901 42 H 0.107 0.893 43 H 0.241 0.759 44 H 0.174 0.826 45 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 9.118 -8.311 2.896 12.673 hybrid contribution 0.443 1.116 -0.734 1.407 sum 9.561 -7.195 2.162 12.160 Atomic orbital electron populations 1.69949 1.06009 1.26842 1.50464 1.24944 0.94819 0.99197 0.95286 0.86535 0.79948 0.83347 0.77920 1.20760 1.21254 1.19762 1.21132 0.93858 0.89864 1.50163 0.91795 1.19979 0.90778 0.86475 0.96521 1.62131 1.23408 1.03756 1.35317 1.21160 0.96646 0.93424 0.92873 1.19726 0.93760 0.97450 0.95265 1.21113 0.94799 0.97752 0.97930 1.21059 0.99928 1.00093 0.92843 1.21015 0.95237 1.00224 0.98135 1.21003 0.95322 1.01128 0.97176 1.20903 0.99066 0.99768 0.92245 1.21064 0.87380 1.00677 0.93461 1.23412 0.86815 0.92204 0.87860 1.82974 1.20475 1.41427 1.63370 1.22144 0.85312 0.91475 0.92546 1.20902 0.86128 0.99110 0.89027 1.86521 1.36943 1.78209 1.35182 1.22853 1.03799 0.94743 1.09263 1.17888 0.86194 0.89274 0.78950 1.90784 1.82564 1.15494 1.49116 1.19746 0.92984 0.90810 1.10645 1.85019 1.39467 1.78259 1.23852 0.92869 0.99209 0.92747 0.90129 0.94434 0.86077 0.86501 0.86812 0.86775 0.86831 0.90952 0.86753 0.90076 0.89256 0.75876 0.82560 0.76563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.22 13.29 55.43 0.74 -24.49 16 2 C 0.06 1.60 5.45 -17.82 -0.10 1.50 16 3 Si 0.89 20.69 29.54 -169.99 -5.02 15.67 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 6 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.51 -13.41 8.35 -34.44 -0.29 -13.70 16 8 H 0.06 1.66 7.42 -52.48 -0.39 1.27 16 9 C 0.19 4.46 4.55 -4.97 -0.02 4.44 16 10 N -0.52 -10.41 4.38 -238.97 -1.05 -11.46 16 11 C 0.09 1.57 4.69 -4.98 -0.02 1.55 16 12 C -0.06 -1.13 4.92 -104.63 -0.52 -1.64 16 13 C -0.10 -1.77 7.86 -39.58 -0.31 -2.08 16 14 C -0.12 -1.98 10.05 -39.58 -0.40 -2.38 16 15 C -0.13 -1.92 10.05 -39.58 -0.40 -2.32 16 16 C -0.13 -1.96 10.05 -39.58 -0.40 -2.35 16 17 C -0.10 -1.72 9.70 -39.58 -0.38 -2.10 16 18 C 0.10 1.76 5.00 -4.98 -0.02 1.74 16 19 C 0.15 2.34 6.14 -35.42 -0.22 2.12 16 20 O -0.18 -2.80 9.69 7.84 0.08 -2.72 16 21 C 0.13 1.71 6.58 -35.51 -0.23 1.48 16 22 C 0.13 1.09 7.32 36.00 0.26 1.35 16 23 O -0.56 -4.94 13.64 -35.23 -0.48 -5.42 16 24 C -0.29 -3.86 9.64 -39.45 -0.38 -4.24 16 25 C 0.39 6.40 6.81 -36.72 -0.25 6.15 16 26 O -0.49 -9.58 17.75 -10.25 -0.18 -9.76 16 27 C -0.09 -1.47 5.81 -39.16 -0.23 -1.70 16 28 O -0.46 -6.73 10.85 -35.02 -0.38 -7.11 16 29 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 30 H -0.01 -0.25 8.08 -51.93 -0.42 -0.67 16 31 H 0.05 1.41 5.26 -51.93 -0.27 1.13 16 32 H 0.08 1.44 5.49 -51.93 -0.28 1.16 16 33 H 0.04 0.67 8.07 -51.93 -0.42 0.25 16 34 H 0.12 2.22 7.78 -52.49 -0.41 1.81 16 35 H 0.12 1.67 8.06 -52.49 -0.42 1.25 16 36 H 0.11 1.40 8.06 -52.49 -0.42 0.97 16 37 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 38 H 0.11 1.82 8.06 -52.49 -0.42 1.40 16 39 H 0.07 1.12 7.15 -51.93 -0.37 0.75 16 40 H 0.11 2.11 6.79 -51.93 -0.35 1.75 16 41 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.09 0.50 8.10 -51.93 -0.42 0.08 16 43 H 0.39 1.31 9.12 45.56 0.42 1.72 16 44 H 0.16 1.77 8.06 -52.49 -0.42 1.34 16 45 H 0.38 3.89 9.07 45.56 0.41 4.30 16 LS Contribution 382.49 15.07 5.76 5.76 Total: -1.00 -34.69 382.49 -8.62 -43.31 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -4.18 Total: 8.39 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: -3.90 Total: -12.18 kcal Atomic # 7 Polarization: -35.64 SS G_CDS: -0.31 Total: -35.95 kcal Atomic # 8 Polarization: -24.04 SS G_CDS: -0.97 Total: -25.01 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.69 -8.62 -43.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020366969.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.242 kcal (2) G-P(sol) polarization free energy of solvation -34.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds