Wall clock time and date at job start Tue Mar 31 2020 06:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30178 * 126.80414 * 2 1 4 4 O 1.20917 * 111.60526 * 180.25203 * 3 2 1 5 5 C 1.34049 * 111.56526 * 359.74749 * 4 3 2 6 6 C 1.50700 * 126.77265 * 180.02562 * 5 4 3 7 7 C 1.35441 * 106.44752 * 359.97438 * 5 4 3 8 8 C 1.50703 * 128.00716 * 179.97438 * 7 5 4 9 9 O 1.42898 * 109.47171 * 90.00181 * 8 7 5 10 10 C 1.35697 * 117.00251 * 180.02562 * 9 8 7 11 11 C 1.39016 * 119.90370 * 359.72477 * 10 9 8 12 12 C 1.37682 * 120.08913 * 179.72427 * 11 10 9 13 13 C 1.39786 * 119.90462 * 0.54888 * 12 11 10 14 14 C 1.47474 * 120.08921 * 179.70381 * 13 12 11 15 15 O 1.21506 * 119.99850 * 180.02562 * 14 13 12 16 16 O 1.34743 * 119.99972 * 0.02562 * 14 13 12 17 17 C 1.45209 * 116.99932 * 180.02562 * 16 14 13 18 18 C 1.52998 * 109.46961 * 180.02562 * 17 16 14 19 19 C 1.50710 * 109.47063 * 179.97438 * 18 17 16 20 20 H 1.07999 * 119.99386 * 0.02562 * 19 18 17 21 21 C 1.37873 * 119.99835 * 179.97438 * 19 18 17 22 22 N 1.31507 * 120.00334 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 119.99628 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47095 * 0.02562 * 23 21 19 25 25 H 1.48496 * 109.46891 * 120.00328 * 23 21 19 26 26 H 1.48502 * 109.46886 * 240.00194 * 23 21 19 27 27 C 1.39787 * 119.81839 * 359.72627 * 13 12 11 28 28 C 1.37673 * 119.90513 * 359.97438 * 27 13 12 29 29 H 1.08999 * 109.47089 * 270.16352 * 1 2 3 30 30 H 1.09006 * 109.47064 * 30.16717 * 1 2 3 31 31 H 1.09000 * 109.47207 * 150.16255 * 1 2 3 32 32 H 1.09002 * 109.46828 * 269.99662 * 6 5 4 33 33 H 1.08998 * 109.47811 * 29.99663 * 6 5 4 34 34 H 1.08996 * 109.47216 * 150.00278 * 6 5 4 35 35 H 1.09002 * 109.47152 * 329.99965 * 8 7 5 36 36 H 1.09001 * 109.46980 * 210.00065 * 8 7 5 37 37 H 1.07999 * 119.95557 * 0.02562 * 11 10 9 38 38 H 1.08007 * 120.04411 * 180.25285 * 12 11 10 39 39 H 1.09003 * 109.46830 * 300.00157 * 17 16 14 40 40 H 1.08995 * 109.46997 * 60.00096 * 17 16 14 41 41 H 1.09003 * 109.47463 * 299.99753 * 18 17 16 42 42 H 1.08995 * 109.47200 * 60.00203 * 18 17 16 43 43 H 0.97003 * 120.00239 * 179.97438 * 22 21 19 44 44 H 1.08004 * 120.04808 * 179.97438 * 27 13 12 45 45 H 1.08007 * 119.95446 * 179.97438 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4537 0.7253 -0.0049 5 6 3.6024 -0.6069 -0.0035 6 6 4.9021 -1.3696 -0.0078 7 6 2.3539 -1.1321 0.0038 8 6 1.9590 -2.5864 0.0077 9 8 1.8413 -3.0444 1.3562 10 6 1.4902 -4.3426 1.5375 11 6 1.2578 -5.1581 0.4359 12 6 0.9070 -6.4773 0.6154 13 6 0.7733 -6.9932 1.9077 14 6 0.3912 -8.4039 2.1047 15 8 0.2750 -8.8506 3.2287 16 8 0.1710 -9.1975 1.0382 17 6 -0.2022 -10.5748 1.3073 18 6 -0.4083 -11.3150 -0.0157 19 6 -0.7950 -12.7447 0.2635 20 1 -0.8852 -13.0904 1.2826 21 6 -1.0347 -13.6107 -0.7822 22 7 -0.9254 -13.1895 -2.0232 23 14 -1.5148 -15.3826 -0.4360 24 1 -1.5693 -15.6030 1.0315 25 1 -2.8487 -15.6585 -1.0275 26 1 -0.5086 -16.2944 -1.0370 27 6 1.0022 -6.1682 3.0127 28 6 1.3587 -4.8519 2.8243 29 1 -0.3633 0.0029 1.0277 30 1 -0.3633 0.8885 -0.5165 31 1 -0.3633 -0.8914 -0.5113 32 1 5.2110 -1.5552 -1.0365 33 1 5.6681 -0.7852 0.5018 34 1 4.7672 -2.3203 0.5080 35 1 2.7199 -3.1710 -0.5094 36 1 1.0022 -2.7044 -0.5009 37 1 1.3574 -4.7576 -0.5621 38 1 0.7306 -7.1113 -0.2410 39 1 0.5902 -11.0615 1.8760 40 1 -1.1274 -10.5946 1.8831 41 1 -1.2005 -10.8285 -0.5848 42 1 0.5172 -11.2952 -0.5912 43 1 -1.0937 -13.7990 -2.7589 44 1 0.8996 -6.5629 4.0127 45 1 1.5354 -4.2136 3.6775 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000021713452.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:05 Heat of formation + Delta-G solvation = -51.182183 kcal Electronic energy + Delta-G solvation = -28058.055527 eV Core-core repulsion = 23816.174954 eV Total energy + Delta-G solvation = -4241.880573 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -45.43685 -40.67052 -39.75015 -37.70301 -36.01803 -35.51962 -34.11130 -33.36658 -31.53467 -30.84849 -30.10622 -29.27233 -28.99557 -27.21962 -25.27253 -23.69516 -23.26421 -21.98494 -21.09508 -20.68452 -20.45601 -18.76511 -18.08037 -17.68252 -17.56396 -16.62459 -16.33014 -16.23090 -15.88238 -15.70520 -15.01118 -14.68288 -14.53410 -14.28152 -13.95246 -13.79916 -13.76617 -13.62264 -13.43855 -13.41159 -13.21182 -12.90572 -12.75756 -12.59666 -12.37653 -12.27875 -11.65686 -11.31580 -11.23341 -11.18164 -11.03002 -10.77793 -10.70910 -10.40817 -10.27473 -9.77480 -9.66043 -9.64556 -9.33120 -9.30257 -8.56254 -8.46257 -6.12466 -4.16559 0.67127 0.85565 1.10438 1.54941 2.51738 2.70158 2.94426 3.16274 3.26357 3.34142 3.39623 3.65627 3.68337 3.90042 4.10689 4.32012 4.37846 4.45176 4.60313 4.65443 4.75648 4.85034 4.86131 4.96362 5.04769 5.06712 5.08721 5.16886 5.20551 5.24445 5.25801 5.37888 5.42638 5.63503 5.74733 5.87243 6.01329 6.08787 6.10398 6.23403 6.35982 6.62498 6.93662 6.97358 7.54102 7.60261 7.77951 7.85018 8.17131 8.24970 8.89217 9.48031 10.99085 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.020823 B = 0.001610 C = 0.001565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.319256 B =17383.698186 C =17885.869275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.042 3.958 3 N -0.366 5.366 4 O 0.098 5.902 5 C 0.004 3.996 6 C -0.082 4.082 7 C -0.217 4.217 8 C 0.140 3.860 9 O -0.306 6.306 10 C 0.157 3.843 11 C -0.224 4.224 12 C -0.017 4.017 13 C -0.156 4.156 14 C 0.503 3.497 15 O -0.518 6.518 16 O -0.354 6.354 17 C 0.076 3.924 18 C 0.024 3.976 19 C -0.526 4.526 20 H 0.060 0.940 21 C 0.060 3.940 22 N -0.890 5.890 23 Si 0.899 3.101 24 H -0.271 1.271 25 H -0.282 1.282 26 H -0.282 1.282 27 C -0.017 4.017 28 C -0.164 4.164 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.136 0.864 38 H 0.147 0.853 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.028 0.972 42 H 0.028 0.972 43 H 0.263 0.737 44 H 0.145 0.855 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.208 28.019 2.911 29.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.118 4.118 3 N -0.073 5.073 4 O 0.036 5.964 5 C -0.060 4.060 6 C -0.139 4.139 7 C -0.221 4.221 8 C 0.064 3.936 9 O -0.220 6.220 10 C 0.111 3.889 11 C -0.243 4.243 12 C -0.035 4.035 13 C -0.157 4.157 14 C 0.348 3.652 15 O -0.409 6.409 16 O -0.270 6.270 17 C 0.004 3.996 18 C -0.013 4.013 19 C -0.564 4.564 20 H 0.078 0.922 21 C -0.142 4.142 22 N -0.529 5.529 23 Si 0.727 3.273 24 H -0.196 1.196 25 H -0.208 1.208 26 H -0.208 1.208 27 C -0.035 4.035 28 C -0.183 4.183 29 H 0.103 0.897 30 H 0.098 0.902 31 H 0.101 0.899 32 H 0.112 0.888 33 H 0.108 0.892 34 H 0.114 0.886 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.153 0.847 38 H 0.164 0.836 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.047 0.953 42 H 0.047 0.953 43 H 0.072 0.928 44 H 0.162 0.838 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 8.984 29.266 3.167 30.777 hybrid contribution -0.431 -1.906 -0.054 1.955 sum 8.553 27.360 3.114 28.834 Atomic orbital electron populations 1.20231 0.85600 1.03956 1.03899 1.23476 0.99117 0.88089 1.01111 1.73889 0.89122 1.23674 1.20628 1.84850 1.21796 1.22203 1.67587 1.24425 0.98213 0.83985 0.99367 1.20480 0.89887 0.98980 1.04548 1.20420 0.92102 0.95905 1.13677 1.20726 1.02146 0.88266 0.82422 1.86096 1.83294 1.23937 1.28655 1.19272 0.92649 0.82644 0.94312 1.21230 1.09616 0.95181 0.98255 1.21393 0.90841 0.94280 0.97008 1.19214 1.10179 0.91789 0.94563 1.20994 0.74094 0.86766 0.83349 1.90797 1.48881 1.75943 1.25298 1.86563 1.78548 1.25864 1.36017 1.23663 0.99106 0.74501 1.02369 1.19180 0.98482 0.93782 0.89851 1.21026 1.47768 0.94385 0.93219 0.92163 1.24980 0.95175 0.99072 0.94937 1.69976 1.48861 1.35710 0.98316 0.86418 0.78174 0.84185 0.78563 1.19569 1.20837 1.20829 1.21093 0.91862 0.91517 0.99050 1.20315 1.07429 0.95668 0.94872 0.89675 0.90225 0.89875 0.88826 0.89240 0.88564 0.90076 0.90044 0.84672 0.83553 0.92221 0.92222 0.95332 0.95330 0.92771 0.83766 0.84403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.49 10.39 36.00 0.37 -0.12 16 2 C 0.04 0.36 7.33 -82.10 -0.60 -0.24 16 3 N -0.37 -3.77 12.07 33.42 0.40 -3.36 16 4 O 0.10 0.89 11.20 17.15 0.19 1.08 16 5 C 0.00 0.03 7.49 -35.31 -0.26 -0.23 16 6 C -0.08 -0.28 10.25 36.01 0.37 0.09 16 7 C -0.22 -1.67 5.95 -104.42 -0.62 -2.30 16 8 C 0.14 0.91 4.98 36.01 0.18 1.09 16 9 O -0.31 -2.71 10.11 -18.80 -0.19 -2.90 16 10 C 0.16 1.51 6.70 -39.01 -0.26 1.24 16 11 C -0.22 -2.10 9.01 -39.50 -0.36 -2.45 16 12 C -0.02 -0.20 9.61 -39.21 -0.38 -0.58 16 13 C -0.16 -2.18 5.87 -104.98 -0.62 -2.79 16 14 C 0.50 9.03 7.89 34.49 0.27 9.30 16 15 O -0.52 -10.42 16.13 -19.27 -0.31 -10.73 16 16 O -0.35 -7.01 9.46 -40.61 -0.38 -7.40 16 17 C 0.08 1.69 5.41 37.16 0.20 1.89 16 18 C 0.02 0.62 5.35 -27.88 -0.15 0.48 16 19 C -0.53 -14.69 9.11 -34.44 -0.31 -15.00 16 20 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 21 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 22 N -0.89 -26.09 13.29 55.43 0.74 -25.35 16 23 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 24 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 25 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 26 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 27 C -0.02 -0.20 9.58 -39.21 -0.38 -0.58 16 28 C -0.16 -1.63 9.97 -39.50 -0.39 -2.03 16 29 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.08 0.40 7.65 -51.93 -0.40 0.00 16 32 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 33 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 34 H 0.10 0.31 8.05 -51.93 -0.42 -0.11 16 35 H 0.08 0.39 7.60 -51.93 -0.39 0.00 16 36 H 0.08 0.44 7.15 -51.93 -0.37 0.07 16 37 H 0.14 0.91 6.28 -52.49 -0.33 0.58 16 38 H 0.15 1.72 7.60 -52.48 -0.40 1.32 16 39 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 40 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 41 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 44 H 0.14 1.63 7.64 -52.48 -0.40 1.22 16 45 H 0.14 1.12 8.06 -52.48 -0.42 0.70 16 LS Contribution 394.67 15.07 5.95 5.95 Total: -1.00 -33.67 394.67 -7.72 -41.39 By element: Atomic # 1 Polarization: 1.77 SS G_CDS: -6.06 Total: -4.29 kcal Atomic # 6 Polarization: -7.59 SS G_CDS: -3.03 Total: -10.62 kcal Atomic # 7 Polarization: -29.86 SS G_CDS: 1.14 Total: -28.72 kcal Atomic # 8 Polarization: -19.25 SS G_CDS: -0.69 Total: -19.94 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.67 -7.72 -41.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000021713452.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.792 kcal (2) G-P(sol) polarization free energy of solvation -33.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds