Wall clock time and date at job start Tue Mar 31 2020 07:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.70567 * 2 1 4 4 C 1.53195 * 109.58864 * 120.35812 * 2 1 3 5 5 C 1.53039 * 109.34064 * 65.16701 * 4 2 1 6 6 C 1.53046 * 109.53782 * 61.34701 * 5 4 2 7 7 C 1.53196 * 109.31467 * 298.63763 * 6 5 4 8 8 H 1.09001 * 109.57989 * 294.84722 * 7 6 5 9 9 C 1.52994 * 109.58393 * 174.42093 * 7 6 5 10 10 N 1.46925 * 108.77462 * 54.63131 * 7 6 5 11 11 C 1.34779 * 120.62880 * 126.43356 * 10 7 6 12 12 O 1.21282 * 119.99435 * 5.43883 * 11 10 7 13 13 C 1.50698 * 119.99888 * 185.43714 * 11 10 7 14 14 O 1.45200 * 109.46944 * 180.02562 * 13 11 10 15 15 C 1.34805 * 117.00103 * 180.02562 * 14 13 11 16 16 O 1.21524 * 119.99972 * 359.97438 * 15 14 13 17 17 C 1.47283 * 119.99900 * 180.02562 * 15 14 13 18 18 C 1.39289 * 120.28971 * 5.62529 * 17 15 14 19 19 C 1.38211 * 120.08524 * 179.76857 * 18 17 15 20 20 C 1.38840 * 120.68207 * 0.51374 * 19 18 17 21 21 C 1.37594 * 120.58179 * 359.74178 * 20 19 18 22 22 C 1.40708 * 119.88997 * 359.97438 * 21 20 19 23 23 C 1.40865 * 120.33409 * 179.97438 * 22 21 20 24 24 H 1.07995 * 120.00014 * 212.74436 * 23 22 21 25 25 C 1.40288 * 119.99791 * 32.73893 * 23 22 21 26 26 N 1.30616 * 120.00341 * 8.96473 * 25 23 22 27 27 Si 1.86799 * 119.99922 * 188.96548 * 25 23 22 28 28 H 1.48500 * 109.47138 * 0.02562 * 27 25 23 29 29 H 1.48501 * 109.47589 * 120.00383 * 27 25 23 30 30 H 1.48502 * 109.47275 * 240.00109 * 27 25 23 31 31 H 1.09003 * 109.47010 * 299.63773 * 1 2 3 32 32 H 1.08994 * 109.47068 * 59.64235 * 1 2 3 33 33 H 1.09002 * 109.46760 * 179.64760 * 1 2 3 34 34 H 1.08999 * 109.49949 * 305.19933 * 4 2 1 35 35 H 1.09002 * 109.49823 * 185.13145 * 4 2 1 36 36 H 1.08998 * 109.46401 * 181.36912 * 5 4 2 37 37 H 1.09005 * 109.45863 * 301.33259 * 5 4 2 38 38 H 1.08999 * 109.49317 * 58.58747 * 6 5 4 39 39 H 1.09001 * 109.49675 * 178.65283 * 6 5 4 40 40 H 1.09002 * 109.47266 * 52.29352 * 9 7 6 41 41 H 1.09000 * 109.47236 * 172.29467 * 9 7 6 42 42 H 1.08995 * 109.47328 * 292.29419 * 9 7 6 43 43 H 1.08996 * 109.47316 * 300.00208 * 13 11 10 44 44 H 1.09003 * 109.46886 * 60.00729 * 13 11 10 45 45 H 1.07996 * 119.95933 * 359.97438 * 18 17 15 46 46 H 1.07998 * 119.65862 * 180.25678 * 19 18 17 47 47 H 1.07996 * 119.70747 * 179.77107 * 20 19 18 48 48 H 1.08003 * 120.05952 * 180.02562 * 21 20 19 49 49 H 0.97005 * 120.00289 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7294 1.2454 5 6 1.6422 -2.2043 1.1705 6 6 2.2807 -2.8466 -0.0632 7 6 1.7692 -2.1417 -1.3235 8 1 0.6987 -2.3168 -1.4310 9 6 2.5064 -2.6841 -2.5495 10 7 2.0219 -0.7001 -1.1945 11 6 2.6921 -0.0319 -2.1542 12 8 3.0066 -0.5975 -3.1799 13 6 3.0506 1.4179 -1.9525 14 8 3.7632 1.9069 -3.1193 15 6 4.1588 3.1955 -3.0992 16 8 3.9143 3.8912 -2.1332 17 6 4.8862 3.7605 -4.2485 18 6 5.0667 3.0061 -5.4054 19 6 5.7459 3.5422 -6.4831 20 6 6.2644 4.8289 -6.4249 21 6 6.1068 5.5966 -5.2940 22 6 5.4143 5.0771 -4.1847 23 6 5.2480 5.8547 -3.0220 24 1 5.2238 5.3787 -2.0529 25 6 5.1140 7.2475 -3.1228 26 7 4.9675 7.8065 -4.2942 27 14 5.1452 8.3029 -1.5818 28 1 5.3220 7.4342 -0.3905 29 1 6.2730 9.2655 -1.6637 30 1 3.8659 9.0481 -1.4662 31 1 -0.3633 0.5082 0.8932 32 1 -0.3633 0.5194 -0.8867 33 1 -0.3633 -1.0277 -0.0063 34 1 1.6076 -0.2786 2.1368 35 1 3.1297 -0.6500 1.2915 36 1 1.9855 -2.7202 2.0672 37 1 0.5572 -2.2823 1.1000 38 1 3.3646 -2.7471 -0.0052 39 1 2.0139 -3.9027 -0.1028 40 1 2.4421 -3.7722 -2.5602 41 1 2.0494 -2.2842 -3.4546 42 1 3.5529 -2.3824 -2.5071 43 1 2.1406 2.0011 -1.8122 44 1 3.6848 1.5161 -1.0714 45 1 4.6726 2.0022 -5.4616 46 1 5.8783 2.9527 -7.3783 47 1 6.7956 5.2308 -7.2749 48 1 6.5133 6.5966 -5.2580 49 1 4.8745 8.7695 -4.3640 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000022872105.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:41 Heat of formation + Delta-G solvation = -94.778213 kcal Electronic energy + Delta-G solvation = -30745.609086 eV Core-core repulsion = 26637.671142 eV Total energy + Delta-G solvation = -4107.937944 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -40.84547 -39.35990 -37.80742 -37.14913 -35.29127 -33.87490 -33.72019 -33.02726 -30.28452 -29.80904 -29.46295 -27.77318 -26.74811 -25.53106 -23.82640 -22.88610 -22.04656 -21.06728 -20.86829 -19.67895 -18.63668 -17.50821 -17.08974 -16.49709 -16.35307 -15.86902 -15.59991 -15.30102 -15.19969 -14.78319 -14.34418 -14.25699 -13.94499 -13.75819 -13.43145 -13.33463 -13.08032 -12.90627 -12.76809 -12.55566 -12.34097 -12.09708 -11.99895 -11.89155 -11.77124 -11.63862 -11.26903 -11.19233 -11.13927 -11.06049 -10.87295 -10.72357 -10.69175 -10.62097 -10.19472 -10.04442 -9.71668 -9.37373 -9.05827 -8.81674 -8.70525 -7.64640 -7.44191 -6.90009 -4.50993 2.19164 2.54044 2.59885 2.78205 3.04296 3.13097 3.18571 3.63218 3.86508 3.89358 4.32142 4.40146 4.51677 4.58693 4.63313 4.73684 4.86300 4.99675 5.10839 5.17245 5.28318 5.31969 5.34112 5.36672 5.56053 5.56295 5.57849 5.60951 5.65317 5.72367 5.76459 5.85012 5.99216 6.04132 6.16436 6.17949 6.28548 6.39470 6.55481 6.60435 6.92929 7.06001 7.12902 7.22311 7.29741 7.46437 7.64450 7.90101 7.94173 8.13959 8.18754 8.55045 8.69953 8.77613 9.03067 10.03636 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013778 B = 0.002911 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.762491 B = 9616.815841 C =11274.270330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.128 3.872 3 H 0.096 0.904 4 C -0.131 4.131 5 C -0.121 4.121 6 C -0.132 4.132 7 C 0.147 3.853 8 H 0.070 0.930 9 C -0.140 4.140 10 N -0.607 5.607 11 C 0.520 3.480 12 O -0.506 6.506 13 C 0.050 3.950 14 O -0.345 6.345 15 C 0.506 3.494 16 O -0.517 6.517 17 C -0.250 4.250 18 C -0.034 4.034 19 C -0.248 4.248 20 C -0.089 4.089 21 C -0.151 4.151 22 C 0.147 3.853 23 C -0.416 4.416 24 H 0.107 0.893 25 C 0.069 3.931 26 N -0.785 5.785 27 Si 0.919 3.081 28 H -0.256 1.256 29 H -0.272 1.272 30 H -0.272 1.272 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.043 0.957 41 H 0.076 0.924 42 H 0.069 0.931 43 H 0.090 0.910 44 H 0.091 0.909 45 H 0.105 0.895 46 H 0.094 0.906 47 H 0.094 0.906 48 H 0.122 0.878 49 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.258 -14.629 10.193 19.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.024 3.976 3 H 0.114 0.886 4 C -0.169 4.169 5 C -0.158 4.158 6 C -0.170 4.170 7 C 0.044 3.956 8 H 0.088 0.912 9 C -0.197 4.197 10 N -0.344 5.344 11 C 0.307 3.693 12 O -0.381 6.381 13 C -0.028 4.028 14 O -0.263 6.263 15 C 0.357 3.643 16 O -0.408 6.408 17 C -0.253 4.253 18 C -0.053 4.053 19 C -0.267 4.267 20 C -0.108 4.108 21 C -0.170 4.170 22 C 0.143 3.857 23 C -0.444 4.444 24 H 0.124 0.876 25 C -0.150 4.150 26 N -0.409 5.409 27 Si 0.743 3.257 28 H -0.180 1.180 29 H -0.197 1.197 30 H -0.197 1.197 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.092 0.908 40 H 0.061 0.939 41 H 0.095 0.905 42 H 0.088 0.912 43 H 0.108 0.892 44 H 0.109 0.891 45 H 0.124 0.876 46 H 0.112 0.888 47 H 0.112 0.888 48 H 0.140 0.860 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.197 -14.505 9.805 18.930 hybrid contribution -0.239 0.648 0.792 1.051 sum -7.436 -13.857 10.597 18.964 Atomic orbital electron populations 1.22174 0.94604 1.02696 1.02759 1.21398 0.94815 0.96717 0.84645 0.88642 1.21938 1.01802 0.95933 0.97207 1.21553 1.00874 0.95403 0.97995 1.22028 1.01294 0.99463 0.94240 1.21233 0.99468 0.78938 0.95933 0.91205 1.22208 1.02054 0.98288 0.97139 1.48156 1.56713 1.08792 1.20742 1.20244 0.77653 0.88103 0.83252 1.90774 1.52513 1.67997 1.26783 1.22466 0.98376 0.92116 0.89851 1.86691 1.68599 1.30402 1.40585 1.21511 0.77009 0.77969 0.87845 1.90722 1.55307 1.59241 1.35538 1.18697 1.14280 0.98904 0.93414 1.20900 0.94698 0.97364 0.92329 1.20383 1.10176 0.97203 0.98923 1.20876 0.98583 0.94251 0.97063 1.21339 1.01896 0.99982 0.93774 1.17463 0.86589 0.88849 0.92788 1.20294 1.37530 0.90703 0.95841 0.87561 1.26171 0.92189 0.98870 0.97800 1.69717 1.32926 1.13001 1.25284 0.86073 0.78566 0.79279 0.81822 1.17970 1.19699 1.19749 0.91142 0.92006 0.91868 0.90471 0.91209 0.91652 0.91497 0.91356 0.90807 0.93871 0.90490 0.91243 0.89162 0.89124 0.87649 0.88750 0.88832 0.86002 0.90501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.25 9.02 37.16 0.34 -0.91 16 2 C 0.13 1.15 3.12 -67.59 -0.21 0.94 16 3 H 0.10 0.90 5.93 -51.93 -0.31 0.59 16 4 C -0.13 -0.97 5.55 -26.61 -0.15 -1.11 16 5 C -0.12 -0.81 5.68 -26.69 -0.15 -0.96 16 6 C -0.13 -1.05 5.37 -26.61 -0.14 -1.19 16 7 C 0.15 1.48 3.08 -67.60 -0.21 1.27 16 8 H 0.07 0.64 7.48 -51.93 -0.39 0.25 16 9 C -0.14 -1.66 7.62 37.15 0.28 -1.38 16 10 N -0.61 -7.00 2.68 -157.72 -0.42 -7.42 16 11 C 0.52 8.01 7.57 -10.99 -0.08 7.92 16 12 O -0.51 -9.34 12.07 -14.10 -0.17 -9.51 16 13 C 0.05 0.83 4.31 36.00 0.16 0.98 16 14 O -0.34 -7.40 9.02 -47.46 -0.43 -7.83 16 15 C 0.51 12.29 7.84 34.41 0.27 12.56 16 16 O -0.52 -13.14 13.36 -19.28 -0.26 -13.39 16 17 C -0.25 -6.40 5.92 -104.39 -0.62 -7.02 16 18 C -0.03 -0.81 9.60 -39.20 -0.38 -1.19 16 19 C -0.25 -5.53 10.03 -39.37 -0.39 -5.93 16 20 C -0.09 -2.03 10.01 -39.59 -0.40 -2.43 16 21 C -0.15 -3.83 8.63 -38.88 -0.34 -4.16 16 22 C 0.15 3.95 5.53 -106.53 -0.59 3.36 16 23 C -0.42 -11.20 7.74 -37.82 -0.29 -11.49 16 24 H 0.11 2.92 5.84 -52.49 -0.31 2.62 16 25 C 0.07 1.73 5.27 -17.30 -0.09 1.63 16 26 N -0.78 -19.81 11.02 55.56 0.61 -19.20 16 27 Si 0.92 18.91 29.57 -169.99 -5.03 13.88 16 28 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 29 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 30 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.44 5.72 -51.93 -0.30 0.15 16 34 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.41 6.51 -51.93 -0.34 0.07 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.08 1.08 6.74 -51.93 -0.35 0.73 16 42 H 0.07 0.98 6.75 -51.93 -0.35 0.63 16 43 H 0.09 1.38 7.71 -51.93 -0.40 0.98 16 44 H 0.09 1.38 7.91 -51.93 -0.41 0.97 16 45 H 0.11 2.33 7.61 -52.49 -0.40 1.93 16 46 H 0.09 1.85 8.06 -52.49 -0.42 1.42 16 47 H 0.09 1.86 8.06 -52.49 -0.42 1.43 16 48 H 0.12 3.11 6.47 -52.48 -0.34 2.77 16 49 H 0.28 6.45 8.29 -40.82 -0.34 6.11 16 LS Contribution 385.14 15.07 5.80 5.80 Total: -1.00 -30.45 385.14 -10.13 -40.59 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -7.25 Total: 6.18 kcal Atomic # 6 Polarization: -6.10 SS G_CDS: -3.00 Total: -9.10 kcal Atomic # 7 Polarization: -26.81 SS G_CDS: 0.19 Total: -26.62 kcal Atomic # 8 Polarization: -29.87 SS G_CDS: -0.86 Total: -30.73 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.03 Total: 13.88 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -30.45 -10.13 -40.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000022872105.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.191 kcal (2) G-P(sol) polarization free energy of solvation -30.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds