Wall clock time and date at job start Tue Mar 31 2020 05:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30836 * 125.89659 * 2 1 4 4 N 1.40087 * 108.20250 * 180.25594 * 3 2 1 5 5 C 1.46502 * 126.03655 * 179.73800 * 4 3 2 6 6 C 1.50700 * 109.47091 * 269.97719 * 5 4 3 7 7 H 1.07999 * 120.00500 * 0.02562 * 6 5 4 8 8 C 1.37881 * 119.99928 * 179.97438 * 6 5 4 9 9 N 1.31516 * 120.00004 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00188 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.46782 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.46874 * 120.00186 * 10 8 6 13 13 H 1.48501 * 109.47145 * 240.00653 * 10 8 6 14 14 C 1.34949 * 107.92814 * 359.72513 * 4 3 2 15 15 C 1.50693 * 126.13024 * 179.97438 * 14 4 3 16 16 C 1.35315 * 107.74236 * 359.97438 * 14 4 3 17 17 C 1.50703 * 126.03992 * 180.02562 * 16 14 4 18 18 C 1.53006 * 109.46850 * 90.00259 * 17 16 14 19 19 C 1.50703 * 109.46853 * 180.02562 * 18 17 16 20 20 O 1.21283 * 120.00050 * 359.97438 * 19 18 17 21 21 N 1.34773 * 119.99772 * 180.02562 * 19 18 17 22 22 C 1.39583 * 119.99717 * 179.97438 * 21 19 18 23 23 N 1.32271 * 119.72937 * 359.97438 * 22 21 19 24 24 C 1.31956 * 121.69503 * 180.02562 * 23 22 21 25 25 C 1.38095 * 120.94852 * 359.97438 * 24 23 22 26 26 C 1.38770 * 119.35613 * 0.02562 * 25 24 23 27 27 C 1.38804 * 118.45000 * 0.02562 * 26 25 24 28 28 O 1.35974 * 120.49519 * 179.97438 * 27 26 25 29 29 H 1.08999 * 109.47355 * 270.20991 * 1 2 3 30 30 H 1.08995 * 109.47356 * 30.20877 * 1 2 3 31 31 H 1.08999 * 109.46735 * 150.21232 * 1 2 3 32 32 H 1.08994 * 109.47197 * 29.97846 * 5 4 3 33 33 H 1.08998 * 109.46764 * 149.97908 * 5 4 3 34 34 H 0.96993 * 120.00332 * 179.97438 * 9 8 6 35 35 H 1.09000 * 109.46804 * 270.02137 * 15 14 4 36 36 H 1.08999 * 109.47074 * 30.01767 * 15 14 4 37 37 H 1.09002 * 109.47308 * 150.02160 * 15 14 4 38 38 H 1.08998 * 109.47206 * 330.00036 * 17 16 14 39 39 H 1.08999 * 109.47377 * 210.00235 * 17 16 14 40 40 H 1.08993 * 109.47363 * 60.00360 * 18 17 16 41 41 H 1.09001 * 109.46924 * 299.99393 * 18 17 16 42 42 H 0.96998 * 120.00223 * 359.97438 * 21 19 18 43 43 H 1.07989 * 119.52579 * 180.27245 * 24 23 22 44 44 H 1.08007 * 120.31793 * 179.97438 * 25 24 23 45 45 H 1.08001 * 120.77316 * 180.02562 * 26 25 24 46 46 H 0.96700 * 114.00256 * 90.00013 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6087 0.6341 -0.0059 5 6 4.7899 1.5008 -0.0134 6 6 5.1881 1.7950 -1.4367 7 1 4.6181 1.3785 -2.2541 8 6 6.2795 2.5969 -1.6955 9 7 6.9733 3.1045 -0.7002 10 14 6.7727 2.9623 -3.4598 11 1 5.8367 2.2775 -4.3873 12 1 6.7189 4.4275 -3.6954 13 1 8.1541 2.4727 -3.6991 14 6 3.6143 -0.7154 -0.0033 15 6 4.8350 -1.5989 -0.0084 16 6 2.3272 -1.1330 0.0046 17 6 1.8599 -2.5657 0.0105 18 6 1.7095 -3.0471 1.4551 19 6 1.2429 -4.4800 1.4610 20 8 1.0492 -5.0591 0.4131 21 7 1.0398 -5.1177 2.6308 22 6 0.6071 -6.4448 2.6363 23 7 0.3975 -7.0711 1.4903 24 6 -0.0120 -8.3249 1.4502 25 6 -0.2384 -9.0355 2.6124 26 6 -0.0316 -8.4187 3.8382 27 6 0.3982 -7.0990 3.8502 28 8 0.6134 -6.4541 5.0277 29 1 -0.3634 0.0038 1.0276 30 1 -0.3634 0.8880 -0.5170 31 1 -0.3633 -0.8919 -0.5105 32 1 4.5588 2.4343 0.4996 33 1 5.6117 0.9992 0.4976 34 1 7.7412 3.6683 -0.8822 35 1 5.1238 -1.8136 -1.0372 36 1 5.6539 -1.0901 0.5002 37 1 4.6103 -2.5321 0.5082 38 1 2.5906 -3.1883 -0.5058 39 1 0.8985 -2.6365 -0.4980 40 1 0.9788 -2.4246 1.9713 41 1 2.6711 -2.9765 1.9635 42 1 1.1944 -4.6545 3.4689 43 1 -0.1679 -8.8035 0.4948 44 1 -0.5740 -10.0612 2.5677 45 1 -0.2012 -8.9531 4.7613 46 1 1.5156 -6.5410 5.3647 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000023019754.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:19 Heat of formation + Delta-G solvation = 27.714070 kcal Electronic energy + Delta-G solvation = -28858.136968 eV Core-core repulsion = 24749.689006 eV Total energy + Delta-G solvation = -4108.447962 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.26390 -40.59703 -39.34288 -37.63333 -35.12179 -34.38712 -33.40442 -32.49119 -32.12186 -30.53906 -29.59996 -28.95754 -26.87587 -25.88093 -24.69638 -23.83232 -23.06770 -22.10940 -20.50556 -19.07504 -18.81796 -18.65615 -18.21979 -17.38197 -16.72056 -16.24601 -16.14406 -15.70227 -15.47078 -15.17907 -14.58304 -14.38765 -14.20211 -13.97108 -13.71701 -13.42441 -13.08106 -12.98878 -12.92285 -12.62028 -12.50027 -12.32237 -12.15480 -11.81957 -11.77938 -11.66886 -11.34763 -11.27694 -11.06776 -10.95583 -10.82704 -10.73604 -10.37876 -10.25904 -10.02864 -9.72261 -9.62371 -9.25994 -8.66037 -8.50532 -8.18646 -7.48619 -6.27453 -4.34567 0.60809 0.86845 2.54198 2.56308 2.77942 3.19417 3.27419 3.33207 3.37081 3.37467 3.60862 3.65040 4.08247 4.29068 4.41599 4.60037 4.71686 4.88447 5.06296 5.11462 5.15947 5.22597 5.32568 5.38760 5.49753 5.64365 5.66393 5.71833 5.81262 5.90192 5.94700 5.95598 6.01632 6.05156 6.23613 6.25057 6.36447 6.43683 6.54119 6.84451 6.90953 7.02139 7.04429 7.11174 7.50892 7.65851 7.69919 7.87499 8.04830 8.09333 8.66371 8.75140 9.31992 10.80189 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.020943 B = 0.001963 C = 0.001941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.671990 B =14262.761340 C =14425.178710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.051 3.949 3 N -0.297 5.297 4 N -0.325 5.325 5 C 0.256 3.744 6 C -0.534 4.534 7 H 0.064 0.936 8 C 0.065 3.935 9 N -0.892 5.892 10 Si 0.906 3.094 11 H -0.271 1.271 12 H -0.280 1.280 13 H -0.281 1.281 14 C 0.094 3.906 15 C -0.086 4.086 16 C -0.269 4.269 17 C -0.011 4.011 18 C -0.131 4.131 19 C 0.502 3.498 20 O -0.469 6.469 21 N -0.662 5.662 22 C 0.348 3.652 23 N -0.462 5.462 24 C 0.126 3.874 25 C -0.195 4.195 26 C -0.074 4.074 27 C 0.012 3.988 28 O -0.488 6.488 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.267 0.733 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.095 0.905 41 H 0.094 0.906 42 H 0.420 0.580 43 H 0.162 0.838 44 H 0.139 0.861 45 H 0.142 0.858 46 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.515 -23.156 11.801 28.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.113 4.113 3 N -0.121 5.121 4 N -0.104 5.104 5 C 0.139 3.861 6 C -0.573 4.573 7 H 0.083 0.917 8 C -0.139 4.139 9 N -0.530 5.530 10 Si 0.733 3.267 11 H -0.195 1.195 12 H -0.206 1.206 13 H -0.206 1.206 14 C -0.037 4.037 15 C -0.144 4.144 16 C -0.282 4.282 17 C -0.050 4.050 18 C -0.171 4.171 19 C 0.289 3.711 20 O -0.337 6.337 21 N -0.310 5.310 22 C 0.115 3.885 23 N -0.178 5.178 24 C -0.032 4.032 25 C -0.217 4.217 26 C -0.100 4.100 27 C -0.038 4.038 28 O -0.296 6.296 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.114 0.886 41 H 0.112 0.888 42 H 0.257 0.743 43 H 0.179 0.821 44 H 0.156 0.844 45 H 0.160 0.840 46 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -11.720 -21.296 10.211 26.366 hybrid contribution 0.880 -0.818 0.511 1.306 sum -10.840 -22.114 10.722 26.861 Atomic orbital electron populations 1.20032 0.88042 1.02468 1.01832 1.21947 0.96115 0.90758 1.02477 1.77281 0.87484 1.22655 1.24652 1.49248 1.05791 1.04196 1.51181 1.19659 0.77976 0.89549 0.98943 1.21347 1.12968 1.31605 0.91349 0.91738 1.24935 0.95721 0.95019 0.98175 1.69925 1.18945 1.33039 1.31103 0.86302 0.78385 0.78296 0.83732 1.19549 1.20632 1.20639 1.20775 0.96107 0.85695 1.01162 1.20350 0.93759 0.97104 1.03218 1.19314 0.91350 0.94980 1.22513 1.19401 1.01794 0.91032 0.92747 1.21797 1.03184 0.90290 1.01863 1.21412 0.77289 0.89455 0.82944 1.90805 1.45396 1.67068 1.30424 1.43876 1.65956 1.09790 1.11351 1.19032 0.93763 0.86600 0.89136 1.67763 1.14025 1.10147 1.25840 1.22765 0.92821 0.88757 0.98849 1.22031 1.05029 1.02042 0.92551 1.21703 0.96281 0.92669 0.99386 1.18836 1.07906 0.92340 0.84706 1.84918 1.35517 1.73963 1.35246 0.91590 0.91555 0.91209 0.93064 0.93097 0.92318 0.90415 0.90929 0.91124 0.91255 0.91111 0.88627 0.88771 0.74295 0.82054 0.84360 0.84023 0.75688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.93 10.26 36.01 0.37 -0.56 16 2 C 0.05 0.97 7.22 -82.40 -0.59 0.38 16 3 N -0.30 -6.81 12.58 33.67 0.42 -6.39 16 4 N -0.32 -7.54 3.60 -58.32 -0.21 -7.75 16 5 C 0.26 6.56 6.00 -5.19 -0.03 6.53 16 6 C -0.53 -14.78 9.39 -34.44 -0.32 -15.10 16 7 H 0.06 1.85 7.81 -52.49 -0.41 1.44 16 8 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 9 N -0.89 -25.11 13.29 55.43 0.74 -24.37 16 10 Si 0.91 21.25 29.54 -169.99 -5.02 16.23 16 11 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 13 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 14 C 0.09 1.85 6.93 -82.27 -0.57 1.28 16 15 C -0.09 -1.39 9.72 36.00 0.35 -1.04 16 16 C -0.27 -4.76 5.35 -105.05 -0.56 -5.32 16 17 C -0.01 -0.15 4.41 -27.88 -0.12 -0.28 16 18 C -0.13 -1.46 5.68 -27.88 -0.16 -1.61 16 19 C 0.50 6.14 7.79 -10.99 -0.09 6.05 16 20 O -0.47 -7.52 14.24 5.55 0.08 -7.44 16 21 N -0.66 -6.49 5.39 -11.29 -0.06 -6.55 16 22 C 0.35 3.76 7.45 -154.43 -1.15 2.61 16 23 N -0.46 -5.74 7.88 -12.22 -0.10 -5.84 16 24 C 0.13 1.12 11.17 -17.55 -0.20 0.92 16 25 C -0.20 -1.27 10.10 -39.44 -0.40 -1.67 16 26 C -0.07 -0.50 10.12 -39.18 -0.40 -0.89 16 27 C 0.01 0.10 6.76 -38.91 -0.26 -0.16 16 28 O -0.49 -3.05 12.77 -19.66 -0.25 -3.30 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.07 0.88 7.25 -51.93 -0.38 0.50 16 32 H 0.05 1.41 8.14 -51.93 -0.42 0.98 16 33 H 0.05 1.28 7.05 -51.93 -0.37 0.92 16 34 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 35 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.07 1.20 7.08 -51.93 -0.37 0.83 16 37 H 0.07 0.91 7.77 -51.93 -0.40 0.51 16 38 H 0.07 1.02 7.73 -51.93 -0.40 0.62 16 39 H 0.07 1.02 7.20 -51.93 -0.37 0.65 16 40 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.42 2.80 8.05 -40.82 -0.33 2.48 16 43 H 0.16 1.06 8.06 -52.49 -0.42 0.63 16 44 H 0.14 0.50 8.06 -52.48 -0.42 0.08 16 45 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 46 H 0.39 0.68 9.06 45.56 0.41 1.09 16 LS Contribution 394.73 15.07 5.95 5.95 Total: -1.00 -36.10 394.73 -8.24 -44.34 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -5.55 Total: 2.31 kcal Atomic # 6 Polarization: -2.97 SS G_CDS: -4.23 Total: -7.20 kcal Atomic # 7 Polarization: -51.68 SS G_CDS: 0.79 Total: -50.89 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: -0.17 Total: -10.73 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -36.10 -8.24 -44.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023019754.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.051 kcal (2) G-P(sol) polarization free energy of solvation -36.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds