Wall clock time and date at job start Tue Mar 31 2020 06:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46501 * 120.00098 * 2 1 4 4 C 1.53001 * 109.46892 * 85.00151 * 3 2 1 5 5 C 1.52996 * 109.46868 * 179.97438 * 4 3 2 6 6 C 1.50698 * 109.47039 * 180.02562 * 5 4 3 7 7 O 1.21211 * 119.99913 * 359.97438 * 6 5 4 8 8 O 1.34315 * 120.00264 * 180.02562 * 6 5 4 9 9 C 1.34921 * 117.00378 * 179.97438 * 8 6 5 10 10 H 1.07999 * 119.99746 * 359.97438 * 9 8 6 11 11 C 1.38752 * 119.99982 * 179.97438 * 9 8 6 12 12 N 1.31440 * 120.00127 * 179.97438 * 11 9 8 13 13 Si 1.86801 * 120.00093 * 0.02562 * 11 9 8 14 14 H 1.48495 * 109.47226 * 90.00023 * 13 11 9 15 15 H 1.48499 * 109.47110 * 210.00139 * 13 11 9 16 16 H 1.48501 * 109.47190 * 329.99706 * 13 11 9 17 17 S 1.65599 * 119.99791 * 180.02562 * 2 1 3 18 18 O 1.42099 * 106.40401 * 203.53818 * 17 2 1 19 19 O 1.42103 * 106.40122 * 336.45794 * 17 2 1 20 20 C 1.76205 * 107.21913 * 89.99801 * 17 2 1 21 21 C 1.38246 * 119.97286 * 269.72470 * 20 17 2 22 22 C 1.38199 * 120.02088 * 179.72340 * 21 20 17 23 23 C 1.38454 * 119.97572 * 0.57118 * 22 21 20 24 24 F 1.35103 * 120.02562 * 179.67919 * 23 22 21 25 25 C 1.38460 * 119.94838 * 359.70850 * 23 22 21 26 26 C 1.38193 * 119.97402 * 359.97438 * 25 23 22 27 27 H 1.09001 * 109.47060 * 270.00243 * 1 2 3 28 28 H 1.09004 * 109.47073 * 29.99732 * 1 2 3 29 29 H 1.09000 * 109.47212 * 149.99814 * 1 2 3 30 30 H 1.09001 * 109.47135 * 205.00098 * 3 2 1 31 31 H 1.09001 * 109.46893 * 325.00392 * 3 2 1 32 32 H 1.09001 * 109.47188 * 299.99915 * 4 3 2 33 33 H 1.08997 * 109.47202 * 59.99921 * 4 3 2 34 34 H 1.09001 * 109.47272 * 300.00016 * 5 4 3 35 35 H 1.09003 * 109.47509 * 60.00204 * 5 4 3 36 36 H 0.96997 * 120.00395 * 180.02562 * 12 11 9 37 37 H 1.08003 * 119.98911 * 359.97438 * 21 20 17 38 38 H 1.08003 * 120.00813 * 180.25164 * 22 21 20 39 39 H 1.07999 * 120.01202 * 179.97438 * 25 23 22 40 40 H 1.08001 * 119.98965 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3437 1.7732 1.4370 5 6 3.1093 3.0978 1.4371 6 6 3.2538 3.5944 2.8525 7 8 2.7900 2.9527 3.7703 8 8 3.8956 4.7487 3.0971 9 6 3.9893 5.1363 4.3860 10 1 3.5579 4.5265 5.1660 11 6 4.6399 6.3184 4.7094 12 7 4.7308 6.6963 5.9650 13 14 5.3855 7.3735 3.3602 14 1 4.3755 8.3510 2.8812 15 1 6.5640 8.1015 3.8954 16 1 5.8099 6.5068 2.2316 17 16 2.2930 -1.4342 -0.0006 18 8 3.5760 -1.1571 0.5439 19 8 1.4113 -2.4067 0.5434 20 6 2.5537 -1.8852 -1.6839 21 6 1.6216 -2.6655 -2.3422 22 6 1.8223 -3.0150 -3.6641 23 6 2.9631 -2.5934 -4.3256 24 9 3.1635 -2.9399 -5.6160 25 6 3.8989 -1.8167 -3.6635 26 6 3.6929 -1.4629 -2.3436 27 1 -0.3633 0.0000 1.0277 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3634 -0.8900 -0.5139 30 1 3.1859 1.1177 -0.4343 31 1 1.6502 2.0043 -0.5894 32 1 1.3555 1.9242 1.8714 33 1 2.8910 1.0376 2.0264 34 1 4.0975 2.9464 1.0029 35 1 2.5623 3.8337 0.8476 36 1 5.1853 7.5229 6.1911 37 1 0.7342 -2.9986 -1.8245 38 1 1.0919 -3.6212 -4.1794 39 1 4.7893 -1.4876 -4.1784 40 1 4.4224 -0.8568 -1.8270 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000023046764.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:35 Heat of formation + Delta-G solvation = -168.953274 kcal Electronic energy + Delta-G solvation = -27252.991107 eV Core-core repulsion = 22882.154148 eV Total energy + Delta-G solvation = -4370.836959 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.092 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.62481 -39.49875 -39.19487 -37.59320 -37.16090 -36.08321 -35.41003 -32.83450 -32.23967 -31.84780 -31.34978 -28.20524 -26.04445 -24.73232 -23.78947 -23.66260 -22.03943 -19.67630 -19.45540 -18.56463 -18.05464 -17.91999 -17.51233 -17.18421 -16.69549 -16.27773 -16.08578 -15.47921 -15.30030 -14.94913 -14.69242 -14.35319 -14.25739 -14.07596 -13.90203 -13.77842 -13.68002 -13.26426 -13.02716 -12.70927 -12.44268 -12.33393 -12.22051 -12.14564 -11.88721 -11.77849 -11.65049 -11.46427 -11.29151 -11.13562 -10.58672 -10.43392 -10.32954 -9.81985 -9.76286 -9.66479 -9.38595 -9.10798 -8.64423 -6.32771 -4.08309 -0.10594 0.19314 0.54633 2.47132 2.85009 3.17239 3.25817 3.37779 3.44494 3.46129 3.51765 3.81826 4.10008 4.17614 4.21054 4.28065 4.40063 4.54564 4.68471 4.94023 5.01135 5.12564 5.14347 5.17597 5.19775 5.29374 5.35915 5.41139 5.42879 5.44523 5.50621 5.56598 5.70772 5.82048 6.12941 6.15610 6.29164 6.48398 6.53636 7.79758 8.08209 8.68060 9.06054 9.73989 10.76054 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.019473 B = 0.002244 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.570497 B =12475.262475 C =13309.096373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.997 5.997 3 C 0.123 3.877 4 C -0.128 4.128 5 C -0.103 4.103 6 C 0.409 3.591 7 O -0.540 6.540 8 O -0.255 6.255 9 C -0.381 4.381 10 H 0.108 0.892 11 C 0.063 3.937 12 N -0.877 5.877 13 Si 0.906 3.094 14 H -0.274 1.274 15 H -0.283 1.283 16 H -0.260 1.260 17 S 2.691 3.309 18 O -0.942 6.942 19 O -0.951 6.951 20 C -0.692 4.692 21 C 0.008 3.992 22 C -0.176 4.176 23 C 0.153 3.847 24 F -0.131 7.131 25 C -0.175 4.175 26 C 0.011 3.989 27 H 0.065 0.935 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.278 0.722 37 H 0.151 0.849 38 H 0.146 0.854 39 H 0.147 0.853 40 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.015 -17.172 -24.868 31.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.836 5.836 3 C -0.002 4.002 4 C -0.167 4.167 5 C -0.141 4.141 6 C 0.254 3.746 7 O -0.434 6.434 8 O -0.164 6.164 9 C -0.456 4.456 10 H 0.126 0.874 11 C -0.140 4.140 12 N -0.517 5.517 13 Si 0.732 3.268 14 H -0.200 1.200 15 H -0.209 1.209 16 H -0.184 1.184 17 S 2.779 3.221 18 O -0.932 6.932 19 O -0.942 6.942 20 C -0.777 4.777 21 C -0.011 4.011 22 C -0.196 4.196 23 C 0.133 3.867 24 F -0.109 7.109 25 C -0.194 4.194 26 C -0.009 4.009 27 H 0.084 0.916 28 H 0.095 0.905 29 H 0.088 0.912 30 H 0.102 0.898 31 H 0.103 0.897 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.113 0.887 35 H 0.111 0.889 36 H 0.089 0.911 37 H 0.168 0.832 38 H 0.164 0.836 39 H 0.165 0.835 40 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -6.796 -17.646 -23.833 30.424 hybrid contribution 0.361 0.575 -1.479 1.627 sum -6.436 -17.071 -25.312 31.201 Atomic orbital electron populations 1.21549 0.77757 1.02978 1.03049 1.57401 1.15515 1.21293 1.89345 1.21442 0.96333 0.84376 0.98011 1.21808 1.02205 0.96644 0.96078 1.21033 1.02758 0.97305 0.93045 1.22976 0.79312 0.80986 0.91305 1.90605 1.48481 1.57450 1.46911 1.83518 1.64775 1.36261 1.31855 1.20646 1.37473 1.07580 0.79938 0.87396 1.24559 0.96235 0.96378 0.96800 1.69610 1.41815 1.23667 1.16594 0.86201 0.78785 0.80042 0.81770 1.19978 1.20865 1.18401 1.02253 0.73558 0.72585 0.73675 1.93632 1.39881 1.84167 1.75509 1.93589 1.66101 1.58655 1.75809 1.31320 1.04311 1.14088 1.27987 1.20828 0.96812 0.90492 0.92958 1.21298 0.98086 1.04277 0.95916 1.18021 0.94962 0.95038 0.78670 1.91557 1.94929 1.89895 1.34518 1.21331 1.00705 1.01422 0.95949 1.20881 0.93949 0.93086 0.92951 0.91627 0.90511 0.91223 0.89831 0.89686 0.90375 0.90089 0.88689 0.88860 0.91123 0.83177 0.83638 0.83509 0.82920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.63 10.33 59.85 0.62 1.25 16 2 N -1.00 -8.94 3.18 -121.75 -0.39 -9.32 16 3 C 0.12 1.12 5.37 -4.04 -0.02 1.10 16 4 C -0.13 -1.75 4.83 -26.73 -0.13 -1.88 16 5 C -0.10 -1.57 5.81 -27.89 -0.16 -1.73 16 6 C 0.41 9.46 7.91 36.00 0.28 9.74 16 7 O -0.54 -14.33 15.22 -19.05 -0.29 -14.62 16 8 O -0.26 -6.73 8.58 -20.71 -0.18 -6.90 16 9 C -0.38 -11.43 10.10 30.92 0.31 -11.12 16 10 H 0.11 3.59 7.09 -52.49 -0.37 3.21 16 11 C 0.06 1.84 5.49 -17.53 -0.10 1.74 16 12 N -0.88 -26.27 13.96 55.48 0.77 -25.50 16 13 Si 0.91 21.41 28.62 -169.99 -4.86 16.55 16 14 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 15 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 16 H -0.26 -5.96 7.11 56.52 0.40 -5.56 16 17 S 2.69 28.37 5.60 -107.50 -0.60 27.77 16 18 O -0.94 -12.79 16.25 -57.17 -0.93 -13.72 16 19 O -0.95 -12.04 16.35 -57.17 -0.93 -12.97 16 20 C -0.69 -5.72 5.97 -39.58 -0.24 -5.95 16 21 C 0.01 0.06 9.52 -39.59 -0.38 -0.32 16 22 C -0.18 -1.14 10.03 -39.52 -0.40 -1.54 16 23 C 0.15 1.12 7.30 -39.42 -0.29 0.83 16 24 F -0.13 -1.02 17.27 2.25 0.04 -0.98 16 25 C -0.17 -1.19 10.03 -39.52 -0.40 -1.59 16 26 C 0.01 0.08 9.52 -39.60 -0.38 -0.30 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.08 0.38 7.94 -51.93 -0.41 -0.03 16 29 H 0.07 0.36 7.79 -51.93 -0.40 -0.04 16 30 H 0.08 0.65 7.61 -51.93 -0.40 0.25 16 31 H 0.08 0.55 7.96 -51.93 -0.41 0.14 16 32 H 0.08 1.10 8.10 -51.93 -0.42 0.68 16 33 H 0.08 1.31 8.10 -51.93 -0.42 0.89 16 34 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.28 7.61 8.31 -40.82 -0.34 7.27 16 37 H 0.15 0.80 7.61 -52.48 -0.40 0.40 16 38 H 0.15 0.61 8.06 -52.48 -0.42 0.19 16 39 H 0.15 0.70 8.06 -52.49 -0.42 0.28 16 40 H 0.15 0.96 7.62 -52.49 -0.40 0.56 16 LS Contribution 367.21 15.07 5.53 5.53 Total: -1.00 -38.02 367.21 -7.99 -46.01 By element: Atomic # 1 Polarization: 2.82 SS G_CDS: -4.89 Total: -2.07 kcal Atomic # 6 Polarization: -8.50 SS G_CDS: -1.26 Total: -9.76 kcal Atomic # 7 Polarization: -35.21 SS G_CDS: 0.39 Total: -34.82 kcal Atomic # 8 Polarization: -45.89 SS G_CDS: -2.33 Total: -48.22 kcal Atomic # 9 Polarization: -1.02 SS G_CDS: 0.04 Total: -0.98 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.86 Total: 16.55 kcal Atomic # 16 Polarization: 28.37 SS G_CDS: -0.60 Total: 27.77 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -38.02 -7.99 -46.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023046764.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.940 kcal (2) G-P(sol) polarization free energy of solvation -38.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds