Wall clock time and date at job start Tue Mar 31 2020 05:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86806 * 119.99710 * 2 1 4 4 H 1.48505 * 109.47054 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47023 * 299.99685 * 3 2 1 6 6 H 1.48506 * 109.47294 * 59.99898 * 3 2 1 7 7 C 1.37879 * 120.00610 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00532 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99571 * 0.02562 * 7 2 1 10 10 N 1.46895 * 109.47098 * 179.97438 * 9 7 2 11 11 C 1.46899 * 110.99952 * 170.00095 * 10 9 7 12 12 C 1.53243 * 109.33869 * 187.25171 * 11 10 9 13 13 N 1.47079 * 108.52336 * 306.17296 * 12 11 10 14 14 S 1.65605 * 120.87796 * 231.18895 * 13 12 11 15 15 O 1.42094 * 106.40242 * 329.02947 * 14 13 12 16 16 O 1.42102 * 106.39924 * 196.11132 * 14 13 12 17 17 C 1.76195 * 107.21941 * 82.57091 * 14 13 12 18 18 C 1.38232 * 120.00570 * 247.28525 * 17 14 13 19 19 C 1.38224 * 120.01235 * 180.25781 * 18 17 14 20 20 C 1.38262 * 120.02863 * 0.03873 * 19 18 17 21 21 C 1.38191 * 120.01040 * 359.96076 * 20 19 18 22 22 C 1.38332 * 120.00566 * 67.56168 * 17 14 13 23 23 Cl 1.73598 * 120.01709 * 359.74542 * 22 17 14 24 24 C 1.47075 * 118.23717 * 51.45620 * 13 12 11 25 25 C 1.46902 * 111.00163 * 294.30119 * 10 9 7 26 26 H 0.97005 * 120.00387 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.46913 * 59.99988 * 9 7 2 28 28 H 1.08998 * 109.47101 * 300.00184 * 9 7 2 29 29 H 1.09005 * 109.49272 * 67.29440 * 11 10 9 30 30 H 1.08996 * 109.49386 * 307.21420 * 11 10 9 31 31 H 1.08997 * 109.62596 * 186.45939 * 12 11 10 32 32 H 1.09001 * 109.62710 * 65.88370 * 12 11 10 33 33 H 1.08003 * 119.99405 * 0.25358 * 18 17 14 34 34 H 1.08002 * 119.98614 * 179.97438 * 19 18 17 35 35 H 1.08001 * 119.99332 * 179.97438 * 20 19 18 36 36 H 1.07997 * 120.00423 * 180.02562 * 21 20 19 37 37 H 1.08997 * 109.63029 * 68.25603 * 24 13 12 38 38 H 1.09003 * 109.62763 * 188.83306 * 24 13 12 39 39 H 1.09002 * 109.49468 * 292.71120 * 25 10 9 40 40 H 1.09004 * 109.48639 * 52.78599 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8902 2.3966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6156 0.0005 11 6 1.5213 -4.8934 0.2387 12 6 2.5640 -6.0031 0.4114 13 7 3.4618 -5.9861 -0.7534 14 16 3.7694 -7.3698 -1.6097 15 8 3.6880 -8.4425 -0.6815 16 8 4.9243 -7.1073 -2.3949 17 6 2.4373 -7.5894 -2.7419 18 6 1.5667 -8.6519 -2.5873 19 6 0.5248 -8.8274 -3.4785 20 6 0.3532 -7.9409 -4.5255 21 6 1.2229 -6.8784 -4.6811 22 6 2.2659 -6.7019 -3.7890 23 17 3.3591 -5.3676 -3.9843 24 6 4.0839 -4.7088 -1.1338 25 6 2.9769 -3.6490 -1.2494 26 1 -0.4851 0.8401 -0.0004 27 1 0.6248 -2.5570 -0.8897 28 1 0.6241 -2.5567 0.8903 29 1 0.8797 -5.1263 -0.6112 30 1 0.9161 -4.8191 1.1421 31 1 2.0634 -6.9693 0.4738 32 1 3.1396 -5.8264 1.3200 33 1 1.7006 -9.3452 -1.7700 34 1 -0.1549 -9.6580 -3.3575 35 1 -0.4608 -8.0788 -5.2218 36 1 1.0885 -6.1857 -5.4988 37 1 4.8029 -4.4101 -0.3710 38 1 4.5888 -4.8190 -2.0936 39 1 2.3150 -3.8991 -2.0785 40 1 3.4272 -2.6720 -1.4250 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000023641149.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:57 Heat of formation + Delta-G solvation = -30.367917 kcal Electronic energy + Delta-G solvation = -26708.983721 eV Core-core repulsion = 22870.211311 eV Total energy + Delta-G solvation = -3838.772410 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 344.075 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.55240 -38.37431 -37.41033 -36.71109 -35.88339 -34.42095 -32.32745 -31.71657 -31.13057 -30.76352 -27.83697 -25.10528 -23.70816 -23.36794 -23.13185 -21.78995 -20.20889 -18.98152 -18.31612 -17.44371 -16.60682 -16.43363 -16.26320 -15.36929 -15.06765 -14.84905 -14.47524 -14.38607 -14.27018 -14.21177 -13.82703 -13.79948 -13.47389 -12.75868 -12.58570 -12.25366 -12.14871 -12.09066 -11.92134 -11.82242 -11.68449 -11.54346 -11.26796 -11.07638 -10.84861 -10.74736 -10.70400 -10.51896 -10.35217 -9.91218 -9.75393 -9.30966 -9.15412 -8.84688 -8.47339 -7.28933 -6.06679 -4.08059 0.19211 0.46855 0.78886 1.69707 2.78921 3.11763 3.28731 3.36650 3.41194 3.64849 4.09985 4.39077 4.45626 4.52424 4.74549 4.76754 4.89748 4.95218 5.09866 5.29085 5.36087 5.40020 5.47327 5.57441 5.65403 5.68663 5.75591 5.82083 5.88718 6.03225 6.17119 6.30410 6.31004 6.46958 6.54243 6.74102 7.23295 7.28872 7.75689 8.02844 8.13736 8.49189 8.99887 9.56667 11.04172 Molecular weight = 344.07amu Principal moments of inertia in cm(-1) A = 0.015286 B = 0.003835 C = 0.003651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.321987 B = 7299.855802 C = 7666.568137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.507 4.507 8 H 0.065 0.935 9 C 0.194 3.806 10 N -0.532 5.532 11 C 0.041 3.959 12 C 0.130 3.870 13 N -0.988 5.988 14 S 2.687 3.313 15 O -0.957 6.957 16 O -0.944 6.944 17 C -0.674 4.674 18 C -0.012 4.012 19 C -0.139 4.139 20 C -0.055 4.055 21 C -0.130 4.130 22 C 0.056 3.944 23 Cl -0.031 7.031 24 C 0.119 3.881 25 C 0.050 3.950 26 H 0.261 0.739 27 H -0.010 1.010 28 H 0.031 0.969 29 H 0.024 0.976 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.151 0.849 34 H 0.138 0.862 35 H 0.139 0.861 36 H 0.143 0.857 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.029 0.971 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.442 -17.799 -8.005 19.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.725 3.275 4 H -0.196 1.196 5 H -0.212 1.212 6 H -0.210 1.210 7 C -0.546 4.546 8 H 0.083 0.917 9 C 0.069 3.931 10 N -0.257 5.257 11 C -0.089 4.089 12 C 0.004 3.996 13 N -0.828 5.828 14 S 2.775 3.225 15 O -0.947 6.947 16 O -0.934 6.934 17 C -0.759 4.759 18 C -0.032 4.032 19 C -0.157 4.157 20 C -0.074 4.074 21 C -0.150 4.150 22 C 0.028 3.972 23 Cl -0.002 7.002 24 C -0.005 4.005 25 C -0.080 4.080 26 H 0.070 0.930 27 H 0.008 0.992 28 H 0.049 0.951 29 H 0.043 0.957 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.102 0.898 33 H 0.168 0.832 34 H 0.156 0.844 35 H 0.157 0.843 36 H 0.161 0.839 37 H 0.099 0.901 38 H 0.107 0.893 39 H 0.047 0.953 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.426 -18.023 -7.562 19.695 hybrid contribution -1.044 1.183 -1.127 1.939 sum 1.382 -16.840 -8.689 19.000 Atomic orbital electron populations 1.69963 1.06092 1.26691 1.51067 1.24980 0.94835 0.99323 0.95400 0.86463 0.80142 0.83449 0.77494 1.19585 1.21168 1.21024 1.21191 0.93561 0.89856 1.49982 0.91702 1.19722 0.89999 0.87261 0.96104 1.61992 1.27800 1.02420 1.33508 1.22389 0.94755 0.91054 1.00732 1.21600 0.91364 0.98757 0.87852 1.57626 1.60221 1.24304 1.40664 1.02275 0.73939 0.72920 0.73356 1.93559 1.86823 1.52905 1.61461 1.93610 1.44752 1.84579 1.70499 1.31139 1.23691 1.04961 1.16127 1.21002 0.91037 0.93592 0.97546 1.21398 0.98592 1.00362 0.95387 1.21460 0.97055 0.92373 0.96473 1.21239 0.94401 0.99554 0.99760 1.20559 0.92502 0.89455 0.94691 1.98464 1.61239 1.43918 1.96546 1.21983 0.95885 0.81605 1.01068 1.22452 0.95189 0.98979 0.91332 0.92983 0.99218 0.95077 0.95741 0.90073 0.90167 0.89818 0.83153 0.84377 0.84276 0.83939 0.90074 0.89327 0.95264 0.88728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.11 13.29 55.43 0.74 -25.38 16 2 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 3 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 4 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 7 C -0.51 -13.73 8.41 -34.44 -0.29 -14.02 16 8 H 0.06 1.73 7.13 -52.49 -0.37 1.36 16 9 C 0.19 4.85 4.72 -4.98 -0.02 4.83 16 10 N -0.53 -10.83 4.62 -235.46 -1.09 -11.92 16 11 C 0.04 0.69 5.62 -3.70 -0.02 0.67 16 12 C 0.13 1.82 6.51 -3.60 -0.02 1.80 16 13 N -0.99 -14.56 3.32 -112.98 -0.38 -14.94 16 14 S 2.69 38.82 5.10 -107.50 -0.55 38.27 16 15 O -0.96 -14.73 16.02 -57.17 -0.92 -15.65 16 16 O -0.94 -15.33 14.97 -57.17 -0.86 -16.19 16 17 C -0.67 -8.71 5.92 -39.55 -0.23 -8.94 16 18 C -0.01 -0.13 9.55 -39.59 -0.38 -0.51 16 19 C -0.14 -1.18 10.05 -39.58 -0.40 -1.58 16 20 C -0.06 -0.47 10.05 -39.59 -0.40 -0.86 16 21 C -0.13 -1.37 9.83 -39.55 -0.39 -1.75 16 22 C 0.06 0.73 6.30 -39.50 -0.25 0.48 16 23 Cl -0.03 -0.43 21.84 -51.86 -1.13 -1.57 16 24 C 0.12 1.87 5.65 -3.37 -0.02 1.85 16 25 C 0.05 0.93 5.21 -3.46 -0.02 0.91 16 26 H 0.26 7.16 8.31 -40.82 -0.34 6.83 16 27 H -0.01 -0.27 8.12 -51.93 -0.42 -0.69 16 28 H 0.03 0.83 7.97 -51.93 -0.41 0.42 16 29 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 1.31 7.99 -51.93 -0.41 0.89 16 31 H 0.08 0.95 7.43 -51.93 -0.39 0.56 16 32 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.15 1.38 7.33 -52.48 -0.38 1.00 16 34 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 35 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 36 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 37 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.09 1.32 4.79 -51.93 -0.25 1.07 16 39 H 0.03 0.54 6.87 -51.93 -0.36 0.18 16 40 H 0.09 1.88 6.67 -51.93 -0.35 1.54 16 LS Contribution 344.50 15.07 5.19 5.19 Total: -1.00 -32.50 344.50 -11.56 -44.07 By element: Atomic # 1 Polarization: 2.65 SS G_CDS: -5.02 Total: -2.37 kcal Atomic # 6 Polarization: -13.16 SS G_CDS: -2.54 Total: -15.70 kcal Atomic # 7 Polarization: -51.51 SS G_CDS: -0.73 Total: -52.23 kcal Atomic # 8 Polarization: -30.06 SS G_CDS: -1.77 Total: -31.83 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: 38.82 SS G_CDS: -0.55 Total: 38.27 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -1.13 Total: -1.57 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.50 -11.56 -44.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023641149.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.697 kcal (2) G-P(sol) polarization free energy of solvation -32.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds