Wall clock time and date at job start Tue Mar 31 2020 05:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86806 * 119.99710 * 2 1 4 4 H 1.48505 * 109.47054 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47023 * 299.99685 * 3 2 1 6 6 H 1.48506 * 109.47294 * 59.99898 * 3 2 1 7 7 C 1.37879 * 120.00610 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00532 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99571 * 0.02562 * 7 2 1 10 10 N 1.46895 * 109.47098 * 179.97438 * 9 7 2 11 11 C 1.46899 * 110.99952 * 170.00095 * 10 9 7 12 12 C 1.53243 * 109.33869 * 187.25171 * 11 10 9 13 13 N 1.47079 * 108.52336 * 306.17296 * 12 11 10 14 14 S 1.65605 * 120.87796 * 231.18895 * 13 12 11 15 15 O 1.42094 * 106.40242 * 329.02947 * 14 13 12 16 16 O 1.42102 * 106.39924 * 196.11132 * 14 13 12 17 17 C 1.76195 * 107.21941 * 82.57091 * 14 13 12 18 18 C 1.38232 * 120.00570 * 247.28525 * 17 14 13 19 19 C 1.38224 * 120.01235 * 180.25781 * 18 17 14 20 20 C 1.38262 * 120.02863 * 0.03873 * 19 18 17 21 21 C 1.38191 * 120.01040 * 359.96076 * 20 19 18 22 22 C 1.38332 * 120.00566 * 67.56168 * 17 14 13 23 23 Cl 1.73598 * 120.01709 * 359.74542 * 22 17 14 24 24 C 1.47075 * 118.23717 * 51.45620 * 13 12 11 25 25 C 1.46902 * 111.00163 * 294.30119 * 10 9 7 26 26 H 0.97005 * 120.00387 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.46913 * 59.99988 * 9 7 2 28 28 H 1.08998 * 109.47101 * 300.00184 * 9 7 2 29 29 H 1.09005 * 109.49272 * 67.29440 * 11 10 9 30 30 H 1.08996 * 109.49386 * 307.21420 * 11 10 9 31 31 H 1.08997 * 109.62596 * 186.45939 * 12 11 10 32 32 H 1.09001 * 109.62710 * 65.88370 * 12 11 10 33 33 H 1.08003 * 119.99405 * 0.25358 * 18 17 14 34 34 H 1.08002 * 119.98614 * 179.97438 * 19 18 17 35 35 H 1.08001 * 119.99332 * 179.97438 * 20 19 18 36 36 H 1.07997 * 120.00423 * 180.02562 * 21 20 19 37 37 H 1.08997 * 109.63029 * 68.25603 * 24 13 12 38 38 H 1.09003 * 109.62763 * 188.83306 * 24 13 12 39 39 H 1.09002 * 109.49468 * 292.71120 * 25 10 9 40 40 H 1.09004 * 109.48639 * 52.78599 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8902 2.3966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6156 0.0005 11 6 1.5213 -4.8934 0.2387 12 6 2.5640 -6.0031 0.4114 13 7 3.4618 -5.9861 -0.7534 14 16 3.7694 -7.3698 -1.6097 15 8 3.6880 -8.4425 -0.6815 16 8 4.9243 -7.1073 -2.3949 17 6 2.4373 -7.5894 -2.7419 18 6 1.5667 -8.6519 -2.5873 19 6 0.5248 -8.8274 -3.4785 20 6 0.3532 -7.9409 -4.5255 21 6 1.2229 -6.8784 -4.6811 22 6 2.2659 -6.7019 -3.7890 23 17 3.3591 -5.3676 -3.9843 24 6 4.0839 -4.7088 -1.1338 25 6 2.9769 -3.6490 -1.2494 26 1 -0.4851 0.8401 -0.0004 27 1 0.6248 -2.5570 -0.8897 28 1 0.6241 -2.5567 0.8903 29 1 0.8797 -5.1263 -0.6112 30 1 0.9161 -4.8191 1.1421 31 1 2.0634 -6.9693 0.4738 32 1 3.1396 -5.8264 1.3200 33 1 1.7006 -9.3452 -1.7700 34 1 -0.1549 -9.6580 -3.3575 35 1 -0.4608 -8.0788 -5.2218 36 1 1.0885 -6.1857 -5.4988 37 1 4.8029 -4.4101 -0.3710 38 1 4.5888 -4.8190 -2.0936 39 1 2.3150 -3.8991 -2.0785 40 1 3.4272 -2.6720 -1.4250 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000023641149.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:56 Heat of formation + Delta-G solvation = -53.144375 kcal Electronic energy + Delta-G solvation = -26709.971382 eV Core-core repulsion = 22870.211311 eV Total energy + Delta-G solvation = -3839.760071 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 344.075 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.34236 -39.79749 -38.55637 -37.69626 -37.06645 -36.04197 -34.28094 -32.51180 -32.11588 -31.89280 -29.65607 -26.80167 -24.73674 -24.53248 -23.95315 -23.57604 -21.57544 -20.05979 -19.39741 -18.59669 -18.47361 -17.44622 -17.36756 -16.71493 -16.38801 -15.95877 -15.85881 -15.74669 -15.49318 -15.41853 -15.03117 -14.94430 -14.76677 -14.17328 -13.74676 -13.58023 -13.53505 -13.32032 -13.26904 -12.95175 -12.77086 -12.72157 -12.63886 -12.60159 -12.55241 -12.24068 -12.17809 -12.01368 -11.69247 -11.49515 -11.25093 -10.61000 -10.59936 -10.15176 -9.97200 -8.97677 -8.19034 -6.28044 -0.84237 -0.42901 0.01431 0.77412 1.41730 1.43266 1.56017 1.71854 2.30034 2.41521 2.57336 3.08838 3.13909 3.27570 3.59237 3.63909 3.86513 4.09512 4.12665 4.14576 4.27552 4.31032 4.34021 4.38663 4.47598 4.63738 4.72969 4.79395 4.84005 5.01542 5.02475 5.05468 5.07504 5.17725 5.23925 5.28563 5.49625 5.61420 5.67483 6.06885 6.32911 6.64229 6.88380 7.41753 8.92150 Molecular weight = 344.07amu Principal moments of inertia in cm(-1) A = 0.015286 B = 0.003835 C = 0.003651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.321987 B = 7299.855802 C = 7666.568137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.004 3.996 3 Si 0.964 3.036 4 H -0.263 1.263 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.520 4.520 8 H 0.065 0.935 9 C 0.210 3.790 10 N -0.538 5.538 11 C 0.040 3.960 12 C 0.133 3.867 13 N -0.992 5.992 14 S 2.697 3.303 15 O -0.968 6.968 16 O -0.968 6.968 17 C -0.689 4.689 18 C -0.022 4.022 19 C -0.130 4.130 20 C -0.046 4.046 21 C -0.140 4.140 22 C 0.032 3.968 23 Cl -0.054 7.054 24 C 0.128 3.872 25 C 0.055 3.945 26 H 0.263 0.737 27 H -0.040 1.040 28 H 0.008 0.992 29 H 0.022 0.978 30 H 0.085 0.915 31 H 0.108 0.892 32 H 0.091 0.909 33 H 0.163 0.837 34 H 0.177 0.823 35 H 0.178 0.822 36 H 0.156 0.844 37 H 0.086 0.914 38 H 0.096 0.904 39 H 0.027 0.973 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.967 -19.298 -8.537 21.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.194 4.194 3 Si 0.790 3.210 4 H -0.187 1.187 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.558 4.558 8 H 0.083 0.917 9 C 0.084 3.916 10 N -0.263 5.263 11 C -0.090 4.090 12 C 0.008 3.992 13 N -0.831 5.831 14 S 2.789 3.211 15 O -0.959 6.959 16 O -0.958 6.958 17 C -0.777 4.777 18 C -0.042 4.042 19 C -0.149 4.149 20 C -0.064 4.064 21 C -0.159 4.159 22 C 0.004 3.996 23 Cl -0.025 7.025 24 C 0.003 3.997 25 C -0.075 4.075 26 H 0.072 0.928 27 H -0.022 1.022 28 H 0.026 0.974 29 H 0.041 0.959 30 H 0.104 0.896 31 H 0.126 0.874 32 H 0.109 0.891 33 H 0.181 0.819 34 H 0.194 0.806 35 H 0.195 0.805 36 H 0.173 0.827 37 H 0.104 0.896 38 H 0.114 0.886 39 H 0.045 0.955 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.991 -19.541 -8.068 21.234 hybrid contribution -1.020 1.516 -1.029 2.097 sum 0.972 -18.024 -9.097 20.213 Atomic orbital electron populations 1.70081 1.07663 1.27715 1.52040 1.25839 0.95647 1.02962 0.94927 0.85403 0.79125 0.78935 0.77575 1.18686 1.20654 1.20555 1.21501 0.93704 0.90995 1.49613 0.91729 1.19353 0.89987 0.88744 0.93499 1.61904 1.26975 1.02859 1.34560 1.22486 0.95603 0.90093 1.00785 1.21659 0.90736 0.98891 0.87905 1.57613 1.60336 1.23907 1.41197 1.01721 0.73958 0.72339 0.73097 1.93537 1.87213 1.53026 1.62110 1.93576 1.46587 1.84784 1.70849 1.30814 1.24164 1.06557 1.16173 1.21335 0.91221 0.93034 0.98586 1.21882 0.97899 1.00962 0.94129 1.21971 0.96927 0.90826 0.96663 1.21575 0.94027 1.00654 0.99671 1.20767 0.93413 0.89427 0.96029 1.98446 1.62271 1.45156 1.96649 1.21826 0.94795 0.81265 1.01810 1.22387 0.95598 0.99067 0.90426 0.92786 1.02218 0.97374 0.95947 0.89634 0.87350 0.89068 0.81908 0.80610 0.80466 0.82662 0.89563 0.88556 0.95505 0.90713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.33 13.29 21.45 0.28 -55.05 16 2 C 0.00 0.24 5.46 84.66 0.46 0.70 16 3 Si 0.96 43.74 29.54 68.60 2.03 45.77 16 4 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16 5 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 6 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 7 C -0.52 -28.75 8.41 25.60 0.22 -28.53 16 8 H 0.06 3.50 7.13 -2.91 -0.02 3.48 16 9 C 0.21 10.90 4.72 85.56 0.40 11.30 16 10 N -0.54 -22.34 4.62 -898.87 -4.15 -26.49 16 11 C 0.04 1.34 5.62 86.38 0.49 1.82 16 12 C 0.13 3.58 6.51 86.35 0.56 4.14 16 13 N -0.99 -28.62 3.32 -511.34 -1.70 -30.32 16 14 S 2.70 75.99 5.10 -56.49 -0.29 75.70 16 15 O -0.97 -28.51 16.02 -128.00 -2.05 -30.56 16 16 O -0.97 -31.40 14.97 -128.00 -1.92 -33.32 16 17 C -0.69 -16.96 5.92 22.29 0.13 -16.82 16 18 C -0.02 -0.42 9.55 22.26 0.21 -0.21 16 19 C -0.13 -1.71 10.05 22.27 0.22 -1.48 16 20 C -0.05 -0.60 10.05 22.26 0.22 -0.38 16 21 C -0.14 -2.67 9.83 22.29 0.22 -2.45 16 22 C 0.03 0.80 6.30 22.33 0.14 0.94 16 23 Cl -0.05 -1.54 21.84 -2.72 -0.06 -1.60 16 24 C 0.13 4.02 5.65 86.50 0.49 4.51 16 25 C 0.05 2.08 5.21 86.54 0.45 2.53 16 26 H 0.26 14.67 8.31 -92.70 -0.77 13.90 16 27 H -0.04 -2.26 8.12 -2.39 -0.02 -2.28 16 28 H 0.01 0.45 7.97 -2.39 -0.02 0.44 16 29 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 30 H 0.09 2.75 7.99 -2.39 -0.02 2.73 16 31 H 0.11 2.33 7.43 -2.39 -0.02 2.31 16 32 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.16 2.55 7.33 -2.91 -0.02 2.53 16 34 H 0.18 0.97 8.06 -2.91 -0.02 0.95 16 35 H 0.18 0.96 8.06 -2.91 -0.02 0.93 16 36 H 0.16 2.43 8.06 -2.91 -0.02 2.41 16 37 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 38 H 0.10 2.91 4.79 -2.39 -0.01 2.89 16 39 H 0.03 1.02 6.87 -2.39 -0.02 1.01 16 40 H 0.07 3.09 6.67 -2.39 -0.02 3.07 16 Total: -1.00 -71.44 344.50 -2.57 -74.01 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: 1.06 Total: 5.80 kcal Atomic # 6 Polarization: -28.16 SS G_CDS: 4.22 Total: -23.94 kcal Atomic # 7 Polarization: -106.30 SS G_CDS: -5.57 Total: -111.86 kcal Atomic # 8 Polarization: -59.92 SS G_CDS: -3.97 Total: -63.88 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Atomic # 16 Polarization: 75.99 SS G_CDS: -0.29 Total: 75.70 kcal Atomic # 17 Polarization: -1.54 SS G_CDS: -0.06 Total: -1.60 kcal Total: -71.44 -2.57 -74.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023641149.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.864 kcal (2) G-P(sol) polarization free energy of solvation -71.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds