Wall clock time and date at job start Tue Mar 31 2020 05:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99985 * 2 1 4 4 H 1.48495 * 109.47385 * 269.99889 * 3 2 1 5 5 H 1.48503 * 109.47203 * 29.99968 * 3 2 1 6 6 H 1.48501 * 109.47154 * 149.99630 * 3 2 1 7 7 C 1.37870 * 120.00012 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00316 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99943 * 0.02562 * 7 2 1 10 10 N 1.46902 * 109.47038 * 185.01923 * 9 7 2 11 11 C 1.46898 * 111.00243 * 295.08182 * 10 9 7 12 12 C 1.53232 * 109.34270 * 187.25843 * 11 10 9 13 13 N 1.47083 * 108.51885 * 306.16402 * 12 11 10 14 14 S 1.65595 * 120.88423 * 231.18541 * 13 12 11 15 15 O 1.42097 * 106.40500 * 203.54307 * 14 13 12 16 16 O 1.42102 * 106.40587 * 336.46403 * 14 13 12 17 17 C 1.76204 * 107.21757 * 90.00116 * 14 13 12 18 18 C 1.38237 * 119.98955 * 269.72898 * 17 14 13 19 19 C 1.38214 * 120.01140 * 179.72020 * 18 17 14 20 20 C 1.38348 * 119.98769 * 0.55189 * 19 18 17 21 21 Cl 1.73605 * 120.01003 * 179.74491 * 20 19 18 22 22 C 1.38346 * 119.97204 * 359.72060 * 20 19 18 23 23 C 1.38208 * 119.99097 * 0.02562 * 22 20 19 24 24 C 1.47081 * 118.23719 * 51.46280 * 13 12 11 25 25 C 1.46905 * 111.00177 * 59.38411 * 10 9 7 26 26 H 0.97009 * 119.99894 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.47132 * 65.02248 * 9 7 2 28 28 H 1.09005 * 109.47295 * 305.01420 * 9 7 2 29 29 H 1.08996 * 109.49613 * 67.29341 * 11 10 9 30 30 H 1.09000 * 109.49044 * 307.21412 * 11 10 9 31 31 H 1.09002 * 109.63234 * 186.45905 * 12 11 10 32 32 H 1.09001 * 109.63371 * 65.87430 * 12 11 10 33 33 H 1.07998 * 119.99089 * 0.02562 * 18 17 14 34 34 H 1.08007 * 120.00314 * 180.26686 * 19 18 17 35 35 H 1.08004 * 120.00478 * 179.97438 * 22 20 19 36 36 H 1.08004 * 119.99613 * 180.02562 * 23 22 20 37 37 H 1.09001 * 109.62627 * 68.24637 * 24 13 12 38 38 H 1.08991 * 109.63088 * 188.82955 * 24 13 12 39 39 H 1.08998 * 109.49105 * 292.70459 * 25 10 9 40 40 H 1.09000 * 109.49131 * 52.78329 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2010 -3.6129 0.1223 11 6 3.0772 -3.6886 -1.0542 12 6 3.9253 -4.9623 -0.9743 13 7 4.6212 -4.9797 0.3214 14 16 6.2565 -5.2265 0.4047 15 8 6.5207 -5.7290 1.7074 16 8 6.6192 -5.9172 -0.7830 17 6 7.0279 -3.6448 0.3156 18 6 7.3827 -3.1172 -0.9119 19 6 7.9825 -1.8741 -0.9827 20 6 8.2383 -1.1627 0.1760 21 17 8.9977 0.3960 0.0881 22 6 7.8881 -1.6937 1.4045 23 6 7.2836 -2.9346 1.4738 24 6 3.8250 -4.7783 1.5415 25 6 2.9816 -3.5059 1.3622 26 1 -0.4850 0.8401 -0.0004 27 1 0.6939 -2.5970 -0.9312 28 1 0.5583 -2.5187 0.8420 29 1 3.7313 -2.8170 -1.0774 30 1 2.4699 -3.7122 -1.9591 31 1 4.6566 -4.9667 -1.7827 32 1 3.2805 -5.8374 -1.0554 33 1 7.1866 -3.6744 -1.8160 34 1 8.2558 -1.4601 -1.9422 35 1 8.0879 -1.1390 2.3094 36 1 7.0098 -3.3490 2.4329 37 1 3.1707 -5.6360 1.6975 38 1 4.4898 -4.6609 2.3973 39 1 3.6370 -2.6368 1.3054 40 1 2.3050 -3.3971 2.2097 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000024167668.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:02 Heat of formation + Delta-G solvation = -40.978066 kcal Electronic energy + Delta-G solvation = -26535.423475 eV Core-core repulsion = 22696.190975 eV Total energy + Delta-G solvation = -3839.232500 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 344.075 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.48325 -38.39899 -37.34598 -36.81789 -35.90652 -34.52608 -32.28969 -31.45437 -31.25947 -30.72579 -27.74552 -25.05943 -23.46897 -23.40454 -23.15538 -22.07870 -20.12229 -18.90762 -18.26309 -17.51893 -16.66256 -16.33139 -16.29655 -15.38565 -14.96129 -14.92702 -14.45439 -14.29086 -14.16914 -13.98960 -13.89811 -13.81357 -13.25425 -12.95937 -12.51369 -12.38888 -12.15233 -12.01763 -11.99757 -11.85888 -11.74106 -11.22876 -11.18820 -11.18608 -11.05130 -10.99738 -10.69587 -10.56644 -10.29091 -9.93437 -9.73200 -9.40197 -9.36882 -8.88996 -8.51886 -7.29967 -6.11596 -4.21151 0.20552 0.50333 0.94706 1.72045 2.79899 3.18890 3.19773 3.27708 3.29742 3.70328 4.12342 4.32361 4.46510 4.51119 4.76626 4.91088 4.93899 5.03752 5.18795 5.21794 5.40959 5.51817 5.55117 5.59051 5.73891 5.74684 5.76989 5.81698 5.82360 6.06438 6.16253 6.37193 6.44189 6.54809 6.65521 6.70768 7.16170 7.43104 7.80504 7.92079 8.15815 8.18937 8.88942 9.46418 10.93394 Molecular weight = 344.07amu Principal moments of inertia in cm(-1) A = 0.008133 B = 0.005659 C = 0.003688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3441.822052 B = 4946.928071 C = 7590.559431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.067 3.933 3 Si 0.885 3.115 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.551 4.551 8 H 0.056 0.944 9 C 0.187 3.813 10 N -0.537 5.537 11 C 0.048 3.952 12 C 0.125 3.875 13 N -0.991 5.991 14 S 2.693 3.307 15 O -0.957 6.957 16 O -0.957 6.957 17 C -0.675 4.675 18 C -0.005 4.005 19 C -0.131 4.131 20 C 0.017 3.983 21 Cl -0.060 7.060 22 C -0.131 4.131 23 C -0.005 4.005 24 C 0.123 3.877 25 C 0.050 3.950 26 H 0.263 0.737 27 H 0.029 0.971 28 H 0.036 0.964 29 H 0.041 0.959 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.149 0.851 34 H 0.143 0.857 35 H 0.143 0.857 36 H 0.149 0.851 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.044 0.956 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.873 -6.143 0.561 16.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.136 4.136 3 Si 0.713 3.287 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.590 4.590 8 H 0.074 0.926 9 C 0.062 3.938 10 N -0.261 5.261 11 C -0.082 4.082 12 C 0.000 4.000 13 N -0.831 5.831 14 S 2.782 3.218 15 O -0.947 6.947 16 O -0.947 6.947 17 C -0.760 4.760 18 C -0.024 4.024 19 C -0.151 4.151 20 C -0.010 4.010 21 Cl -0.031 7.031 22 C -0.151 4.151 23 C -0.024 4.024 24 C -0.002 4.002 25 C -0.080 4.080 26 H 0.073 0.927 27 H 0.047 0.953 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.096 0.904 31 H 0.101 0.899 32 H 0.097 0.903 33 H 0.167 0.833 34 H 0.161 0.839 35 H 0.161 0.839 36 H 0.167 0.833 37 H 0.097 0.903 38 H 0.102 0.898 39 H 0.062 0.938 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 14.931 -7.109 0.657 16.550 hybrid contribution 0.970 3.048 -0.147 3.202 sum 15.900 -4.062 0.510 16.419 Atomic orbital electron populations 1.69933 1.05971 1.26900 1.49893 1.24931 0.94722 0.99047 0.94854 0.86711 0.79961 0.83841 0.78220 1.20621 1.21054 1.19990 1.21717 0.93213 0.92088 1.51985 0.92634 1.19774 0.90734 0.85299 0.97994 1.62413 1.16855 1.46494 1.00377 1.22257 0.95510 0.95100 0.95361 1.21701 0.95865 1.00112 0.82371 1.57655 1.23462 1.88092 1.13872 1.02005 0.72328 0.73888 0.73537 1.93567 1.84110 1.77432 1.39614 1.93567 1.82338 1.70348 1.48493 1.31298 1.18418 1.26767 0.99526 1.20886 0.91326 0.93699 0.96533 1.21194 1.01019 0.95046 0.97831 1.21287 0.96566 0.87617 0.95520 1.98399 1.79619 1.26362 1.98721 1.21195 1.00558 0.96444 0.96864 1.20891 0.91599 0.92345 0.97560 1.21820 0.94267 0.99774 0.84303 1.22319 0.96316 0.94707 0.94634 0.92732 0.95300 0.94555 0.94081 0.90354 0.89866 0.90305 0.83328 0.83916 0.83919 0.83323 0.90301 0.89841 0.93824 0.90314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.21 13.29 55.43 0.74 -24.47 16 2 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 3 Si 0.88 20.84 29.54 -169.99 -5.02 15.82 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 6 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.55 -14.26 7.75 -34.44 -0.27 -14.53 16 8 H 0.06 1.43 5.88 -52.48 -0.31 1.12 16 9 C 0.19 4.49 5.11 -4.98 -0.03 4.47 16 10 N -0.54 -10.37 4.83 -235.47 -1.14 -11.51 16 11 C 0.05 0.82 5.24 -3.71 -0.02 0.80 16 12 C 0.12 1.71 6.53 -3.60 -0.02 1.69 16 13 N -0.99 -13.64 3.32 -112.97 -0.38 -14.02 16 14 S 2.69 36.45 5.70 -107.50 -0.61 35.84 16 15 O -0.96 -14.41 16.05 -57.17 -0.92 -15.33 16 16 O -0.96 -14.37 16.05 -57.17 -0.92 -15.28 16 17 C -0.67 -8.62 5.97 -39.58 -0.24 -8.86 16 18 C -0.01 -0.06 9.52 -39.59 -0.38 -0.44 16 19 C -0.13 -1.51 9.83 -39.55 -0.39 -1.90 16 20 C 0.02 0.21 6.32 -39.50 -0.25 -0.04 16 21 Cl -0.06 -0.67 28.96 -51.86 -1.50 -2.18 16 22 C -0.13 -1.53 9.83 -39.55 -0.39 -1.92 16 23 C 0.00 -0.05 9.52 -39.59 -0.38 -0.43 16 24 C 0.12 1.71 6.56 -3.36 -0.02 1.69 16 25 C 0.05 0.87 5.17 -3.46 -0.02 0.85 16 26 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 27 H 0.03 0.74 8.07 -51.93 -0.42 0.32 16 28 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.04 0.76 6.92 -51.93 -0.36 0.40 16 30 H 0.08 1.32 8.05 -51.93 -0.42 0.90 16 31 H 0.08 0.99 7.22 -51.93 -0.37 0.61 16 32 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.15 1.51 7.61 -52.49 -0.40 1.11 16 34 H 0.14 1.32 8.06 -52.48 -0.42 0.90 16 35 H 0.14 1.35 8.06 -52.48 -0.42 0.93 16 36 H 0.15 1.53 7.62 -52.48 -0.40 1.13 16 37 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.08 1.01 7.21 -51.93 -0.37 0.63 16 39 H 0.04 0.83 6.79 -51.93 -0.35 0.47 16 40 H 0.08 1.37 8.11 -51.93 -0.42 0.94 16 LS Contribution 354.21 15.07 5.34 5.34 Total: -1.00 -31.21 354.21 -11.97 -43.18 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -5.08 Total: -0.49 kcal Atomic # 6 Polarization: -14.41 SS G_CDS: -2.49 Total: -16.90 kcal Atomic # 7 Polarization: -49.23 SS G_CDS: -0.78 Total: -50.00 kcal Atomic # 8 Polarization: -28.78 SS G_CDS: -1.84 Total: -30.61 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 16 Polarization: 36.45 SS G_CDS: -0.61 Total: 35.84 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -1.50 Total: -2.18 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.21 -11.97 -43.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000024167668.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.207 kcal (2) G-P(sol) polarization free energy of solvation -31.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds