Wall clock time and date at job start Tue Mar 31 2020 05:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31570 * 1 3 3 Si 1.86808 * 120.00066 * 2 1 4 4 H 1.48494 * 109.47103 * 269.99579 * 3 2 1 5 5 H 1.48500 * 109.47037 * 29.99994 * 3 2 1 6 6 H 1.48507 * 109.46971 * 149.99439 * 3 2 1 7 7 C 1.38633 * 120.00103 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99911 * 180.02562 * 7 2 1 9 9 O 1.34817 * 119.99526 * 0.02562 * 7 2 1 10 10 C 1.35783 * 116.99629 * 174.96006 * 9 7 2 11 11 C 1.38903 * 119.99748 * 185.06374 * 10 9 7 12 12 C 1.38012 * 119.99956 * 179.76631 * 11 10 9 13 13 C 1.38915 * 119.99829 * 0.53868 * 12 11 10 14 14 N 1.40030 * 120.00180 * 179.70140 * 13 12 11 15 15 C 1.34776 * 119.99945 * 35.13888 * 14 13 12 16 16 O 1.21589 * 119.99790 * 355.50122 * 15 14 13 17 17 N 1.34771 * 119.99799 * 175.49576 * 15 14 13 18 18 C 1.46504 * 119.99755 * 180.02562 * 17 15 14 19 19 C 1.53005 * 109.46759 * 179.97438 * 18 17 15 20 20 C 1.50706 * 109.46924 * 179.97438 * 19 18 17 21 21 C 1.38241 * 119.97343 * 269.73004 * 20 19 18 22 22 C 1.38207 * 120.01808 * 179.72778 * 21 20 19 23 23 C 1.38453 * 119.97632 * 0.56466 * 22 21 20 24 24 F 1.35102 * 120.02554 * 179.68570 * 23 22 21 25 25 C 1.38461 * 119.95049 * 359.70746 * 23 22 21 26 26 C 1.38201 * 119.97248 * 359.97438 * 25 23 22 27 27 C 1.38915 * 119.99768 * 359.71438 * 13 12 11 28 28 C 1.38012 * 119.99714 * 0.02562 * 27 13 12 29 29 H 0.97008 * 120.00028 * 0.02562 * 1 2 3 30 30 H 1.08001 * 119.99963 * 0.02562 * 11 10 9 31 31 H 1.07995 * 120.00257 * 180.25134 * 12 11 10 32 32 H 0.97000 * 119.99428 * 215.14352 * 14 13 12 33 33 H 0.96996 * 120.00125 * 359.97438 * 17 15 14 34 34 H 1.08996 * 109.47001 * 299.99800 * 18 17 15 35 35 H 1.09003 * 109.46902 * 60.00267 * 18 17 15 36 36 H 1.08996 * 109.47321 * 299.99752 * 19 18 17 37 37 H 1.09003 * 109.47075 * 60.00521 * 19 18 17 38 38 H 1.07998 * 119.99056 * 359.97438 * 21 20 19 39 39 H 1.08000 * 120.00439 * 180.25597 * 22 21 20 40 40 H 1.07993 * 120.01555 * 179.97438 * 25 23 22 41 41 H 1.07997 * 119.98531 * 179.97438 * 26 25 23 42 42 H 1.07992 * 119.99919 * 179.97438 * 27 13 12 43 43 H 1.07995 * 119.99630 * 180.02562 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 2.4973 2.0464 -1.4000 5 1 1.4472 2.6527 0.7000 6 1 3.5473 1.4402 0.7002 7 6 2.0089 -1.2006 0.0005 8 1 3.0889 -1.2005 0.0010 9 8 1.3347 -2.3681 0.0005 10 6 2.0702 -3.5045 -0.1052 11 6 1.4352 -4.7348 -0.2175 12 6 2.1828 -5.8895 -0.3299 13 6 3.5703 -5.8224 -0.3194 14 7 4.3288 -6.9945 -0.4270 15 6 3.8935 -8.0104 -1.1984 16 8 2.8047 -7.9427 -1.7353 17 7 4.6652 -9.1011 -1.3748 18 6 4.1923 -10.2051 -2.2137 19 6 5.2506 -11.3096 -2.2473 20 6 4.7639 -12.4456 -3.1098 21 6 4.0418 -13.4808 -2.5458 22 6 3.5902 -14.5202 -3.3369 23 6 3.8712 -14.5302 -4.6926 24 9 3.4356 -15.5490 -5.4657 25 6 4.5993 -13.4957 -5.2553 26 6 5.0442 -12.4541 -4.4635 27 6 4.2053 -4.5925 -0.2017 28 6 3.4576 -3.4374 -0.0948 29 1 -0.4850 0.8401 -0.0004 30 1 0.3565 -4.7874 -0.2212 31 1 1.6891 -6.8457 -0.4213 32 1 5.1674 -7.0753 0.0536 33 1 5.5340 -9.1549 -0.9468 34 1 3.2646 -10.6026 -1.8022 35 1 4.0146 -9.8419 -3.2260 36 1 6.1780 -10.9119 -2.6591 37 1 5.4287 -11.6730 -1.2352 38 1 3.8272 -13.4753 -1.4874 39 1 3.0226 -15.3267 -2.8968 40 1 4.8194 -13.5027 -6.3126 41 1 5.6125 -11.6472 -4.9022 42 1 5.2839 -4.5404 -0.1931 43 1 3.9513 -2.4812 -0.0038 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000024689591.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:23 Heat of formation + Delta-G solvation = -48.140521 kcal Electronic energy + Delta-G solvation = -27096.791762 eV Core-core repulsion = 22829.301442 eV Total energy + Delta-G solvation = -4267.490320 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.132 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -49.29063 -40.36761 -39.67322 -38.74028 -36.78177 -35.46403 -33.97309 -32.70151 -32.10245 -31.61554 -30.17323 -28.83473 -27.37757 -25.32502 -23.96901 -23.54611 -22.24030 -21.66678 -21.57217 -20.49966 -18.57440 -18.08474 -17.78136 -17.34866 -16.91893 -16.56081 -16.07169 -15.97145 -15.67999 -15.10407 -14.58792 -14.53427 -14.47215 -14.41706 -14.11740 -13.98521 -13.57959 -13.52563 -13.35147 -13.07978 -12.78840 -12.50199 -12.11861 -12.04738 -11.93011 -11.76100 -11.53866 -11.48650 -11.37402 -11.00493 -10.72665 -10.45120 -9.94806 -9.61617 -9.59166 -9.22963 -9.19873 -9.02818 -8.66728 -8.16443 -6.88401 -6.41566 -3.99752 0.63261 0.75425 2.19245 2.27254 2.66744 3.10326 3.13593 3.15019 3.19774 3.33534 3.81986 3.99021 4.12487 4.19859 4.39406 4.46214 4.58738 4.60633 4.63951 4.77942 4.97929 5.09866 5.12360 5.37508 5.39444 5.52644 5.54203 5.57720 5.64181 5.65904 5.75077 5.82520 6.03463 6.16860 6.22756 6.27500 6.32949 6.41272 6.70202 6.87642 6.94966 7.15025 7.25608 7.28578 7.46526 7.83820 8.02553 8.05162 8.67633 9.03813 9.74972 10.76490 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.029816 B = 0.001459 C = 0.001440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.876494 B =19184.603046 C =19445.401537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.274 1.274 5 H -0.278 1.278 6 H -0.268 1.268 7 C -0.391 4.391 8 H 0.092 0.908 9 O -0.178 6.178 10 C 0.146 3.854 11 C -0.178 4.178 12 C -0.067 4.067 13 C 0.052 3.948 14 N -0.675 5.675 15 C 0.699 3.301 16 O -0.574 6.574 17 N -0.751 5.751 18 C 0.144 3.856 19 C -0.091 4.091 20 C -0.091 4.091 21 C -0.083 4.083 22 C -0.152 4.152 23 C 0.095 3.905 24 F -0.141 7.141 25 C -0.152 4.152 26 C -0.083 4.083 27 C -0.092 4.092 28 C -0.220 4.220 29 H 0.269 0.731 30 H 0.120 0.880 31 H 0.131 0.869 32 H 0.397 0.603 33 H 0.394 0.606 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.134 0.866 39 H 0.136 0.864 40 H 0.136 0.864 41 H 0.134 0.866 42 H 0.109 0.891 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.650 -26.343 -4.283 30.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.166 4.166 3 Si 0.766 3.234 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.468 4.468 8 H 0.109 0.891 9 O -0.081 6.081 10 C 0.092 3.908 11 C -0.198 4.198 12 C -0.087 4.087 13 C -0.040 4.040 14 N -0.322 5.322 15 C 0.399 3.601 16 O -0.451 6.451 17 N -0.407 5.407 18 C 0.020 3.980 19 C -0.128 4.128 20 C -0.092 4.092 21 C -0.102 4.102 22 C -0.171 4.171 23 C 0.075 3.925 24 F -0.120 7.120 25 C -0.170 4.170 26 C -0.101 4.101 27 C -0.113 4.113 28 C -0.240 4.240 29 H 0.079 0.921 30 H 0.138 0.862 31 H 0.148 0.852 32 H 0.231 0.769 33 H 0.228 0.772 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.152 0.848 39 H 0.154 0.846 40 H 0.154 0.846 41 H 0.152 0.848 42 H 0.127 0.873 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 13.182 -26.123 -4.813 29.654 hybrid contribution 1.319 0.513 0.186 1.427 sum 14.500 -25.610 -4.626 29.792 Atomic orbital electron populations 1.70050 1.05934 1.27590 1.46177 1.25280 0.95833 0.98795 0.96652 0.85720 0.78877 0.80184 0.78669 1.19929 1.20305 1.19247 1.21306 0.91755 0.80907 1.52814 0.89108 1.83995 1.34208 1.11363 1.78569 1.19418 0.90248 0.88141 0.93004 1.20159 0.99732 0.89865 1.10072 1.20774 0.91886 0.98188 0.97868 1.17043 0.90449 0.83899 1.12647 1.42293 1.25665 1.14924 1.49326 1.15950 0.84342 0.79984 0.79810 1.90942 1.20752 1.80201 1.53160 1.45074 1.21729 1.18709 1.55233 1.21133 0.96620 0.84960 0.95319 1.20782 0.98812 0.93237 1.00013 1.19722 0.99190 0.96087 0.94153 1.20966 0.96252 0.92689 1.00246 1.21171 1.02836 1.00917 0.92130 1.17774 0.98787 0.86700 0.89191 1.91509 1.87801 1.57684 1.74960 1.21175 1.00232 0.94326 1.01304 1.20972 0.98718 0.97599 0.92847 1.20449 0.98346 0.90669 1.01794 1.20950 0.93675 0.98308 1.11035 0.92064 0.86166 0.85176 0.76879 0.77214 0.91320 0.91314 0.89934 0.89947 0.84774 0.84627 0.84621 0.84764 0.87260 0.85146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.46 13.67 55.48 0.76 -24.70 16 2 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 3 Si 0.94 20.51 29.55 -169.99 -5.02 15.48 16 4 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 5 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 6 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 7 C -0.39 -10.96 9.48 30.88 0.29 -10.66 16 8 H 0.09 2.33 5.20 -52.49 -0.27 2.05 16 9 O -0.18 -5.13 9.76 -0.02 0.00 -5.13 16 10 C 0.15 3.58 6.65 -39.09 -0.26 3.32 16 11 C -0.18 -3.99 9.99 -39.42 -0.39 -4.38 16 12 C -0.07 -1.35 8.69 -39.41 -0.34 -1.69 16 13 C 0.05 0.94 6.30 -83.61 -0.53 0.41 16 14 N -0.67 -9.05 5.35 -14.18 -0.08 -9.12 16 15 C 0.70 9.82 8.41 -86.92 -0.73 9.09 16 16 O -0.57 -10.74 13.78 5.29 0.07 -10.67 16 17 N -0.75 -6.66 5.56 -65.22 -0.36 -7.03 16 18 C 0.14 1.16 5.66 -4.04 -0.02 1.14 16 19 C -0.09 -0.43 5.46 -27.88 -0.15 -0.58 16 20 C -0.09 -0.54 5.13 -104.62 -0.54 -1.08 16 21 C -0.08 -0.50 9.70 -39.59 -0.38 -0.88 16 22 C -0.15 -1.02 10.03 -39.51 -0.40 -1.42 16 23 C 0.09 0.75 7.30 -39.42 -0.29 0.46 16 24 F -0.14 -1.27 17.27 2.25 0.04 -1.23 16 25 C -0.15 -1.03 10.03 -39.51 -0.40 -1.43 16 26 C -0.08 -0.50 9.70 -39.59 -0.38 -0.89 16 27 C -0.09 -1.65 9.96 -39.41 -0.39 -2.04 16 28 C -0.22 -4.73 9.16 -39.42 -0.36 -5.09 16 29 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 30 H 0.12 2.61 8.06 -52.49 -0.42 2.19 16 31 H 0.13 2.59 6.22 -52.49 -0.33 2.26 16 32 H 0.40 3.71 8.84 -40.82 -0.36 3.35 16 33 H 0.39 2.12 8.49 -40.82 -0.35 1.78 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.08 0.30 8.09 -51.93 -0.42 -0.12 16 37 H 0.08 0.29 8.08 -51.93 -0.42 -0.13 16 38 H 0.13 0.56 8.06 -52.49 -0.42 0.13 16 39 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 40 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 41 H 0.13 0.59 8.06 -52.49 -0.42 0.16 16 42 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 43 H 0.13 2.77 5.63 -52.49 -0.30 2.47 16 LS Contribution 376.87 15.07 5.68 5.68 Total: -1.00 -35.08 376.87 -9.24 -44.32 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -4.96 Total: 7.15 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: -5.37 Total: -14.75 kcal Atomic # 7 Polarization: -41.17 SS G_CDS: 0.32 Total: -40.85 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: 0.07 Total: -15.80 kcal Atomic # 9 Polarization: -1.27 SS G_CDS: 0.04 Total: -1.23 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.08 -9.24 -44.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000024689591.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.822 kcal (2) G-P(sol) polarization free energy of solvation -35.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds