Wall clock time and date at job start Tue Mar 31 2020 05:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46900 * 110.99980 * 2 1 4 4 C 1.50696 * 109.46971 * 66.04881 * 3 2 1 5 5 O 1.21274 * 120.00103 * 359.97438 * 4 3 2 6 6 N 1.34780 * 119.99909 * 179.97438 * 4 3 2 7 7 C 1.46504 * 119.99737 * 359.97438 * 6 4 3 8 8 C 1.46502 * 120.00170 * 179.97438 * 6 4 3 9 9 C 1.50704 * 109.46718 * 89.99967 * 8 6 4 10 10 H 1.08004 * 120.00045 * 0.02562 * 9 8 6 11 11 C 1.37877 * 119.99604 * 180.02562 * 9 8 6 12 12 N 1.31511 * 119.99965 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 119.99610 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47346 * 60.00039 * 13 11 9 15 15 H 1.48499 * 109.46782 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.46903 * 299.99723 * 13 11 9 17 17 C 1.46904 * 110.99909 * 236.04731 * 2 1 3 18 18 C 1.50706 * 109.46891 * 293.95201 * 17 2 1 19 19 N 1.29830 * 118.31791 * 0.02562 * 18 17 2 20 20 C 1.35655 * 121.62165 * 180.02562 * 19 18 17 21 21 C 1.39636 * 121.65575 * 179.97438 * 20 19 18 22 22 C 1.37668 * 119.68891 * 180.02562 * 21 20 19 23 23 C 1.38881 * 120.81853 * 0.02562 * 22 21 20 24 24 C 1.37767 * 120.56958 * 359.92573 * 23 22 21 25 25 C 1.39336 * 119.51575 * 0.09772 * 24 23 22 26 26 C 1.47048 * 121.93216 * 179.64853 * 25 24 23 27 27 O 1.21721 * 121.30024 * 0.27263 * 26 25 24 28 28 N 1.35350 * 117.40183 * 179.72717 * 26 25 24 29 29 H 0.97001 * 119.69487 * 180.25380 * 28 26 25 30 30 H 1.08999 * 109.47260 * 183.95486 * 1 2 3 31 31 H 1.08993 * 109.46886 * 303.95376 * 1 2 3 32 32 H 1.09003 * 109.47022 * 63.95454 * 1 2 3 33 33 H 1.09005 * 109.46795 * 186.04798 * 3 2 1 34 34 H 1.08999 * 109.46972 * 306.04437 * 3 2 1 35 35 H 1.08998 * 109.47514 * 90.00013 * 7 6 4 36 36 H 1.09007 * 109.46618 * 210.00032 * 7 6 4 37 37 H 1.08997 * 109.47372 * 329.99379 * 7 6 4 38 38 H 1.08999 * 109.46988 * 209.99864 * 8 6 4 39 39 H 1.08994 * 109.46992 * 330.00517 * 8 6 4 40 40 H 0.97003 * 119.99800 * 179.97438 * 12 11 9 41 41 H 1.08998 * 109.46841 * 173.95741 * 17 2 1 42 42 H 1.08991 * 109.47519 * 53.95328 * 17 2 1 43 43 H 1.08004 * 120.15679 * 359.97438 * 21 20 19 44 44 H 1.07995 * 119.58900 * 179.97438 * 22 21 20 45 45 H 1.08001 * 119.71622 * 180.02562 * 23 22 21 46 46 H 1.07997 * 120.24166 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6370 2.0471 1.2984 5 8 1.0048 1.4456 2.1407 6 7 2.0189 3.3198 1.5237 7 6 2.7831 4.0462 0.5065 8 6 1.6700 3.9769 2.7858 9 6 2.7621 3.7362 3.7961 10 1 3.6295 3.1526 3.5250 11 6 2.6538 4.2611 5.0664 12 7 1.5973 4.9713 5.3966 13 14 4.0078 3.9634 6.3184 14 1 5.2858 4.5211 5.8076 15 1 3.6535 4.6283 7.5981 16 1 4.1601 2.5037 6.5451 17 6 1.9954 -0.7660 -1.1376 18 6 1.6369 -2.2205 -0.9728 19 7 0.9594 -2.5726 0.0772 20 6 0.6013 -3.8632 0.2928 21 6 -0.1268 -4.2428 1.4221 22 6 -0.4683 -5.5645 1.6007 23 6 -0.0970 -6.5272 0.6712 24 6 0.6208 -6.1771 -0.4515 25 6 0.9768 -4.8449 -0.6508 26 6 1.7487 -4.4136 -1.8257 27 8 2.1035 -5.2090 -2.6761 28 7 2.0396 -3.0958 -1.9306 29 1 2.5440 -2.7743 -2.6942 30 1 -0.3634 -1.0252 0.0709 31 1 -0.3633 0.5739 0.8524 32 1 -0.3633 0.4512 -0.9233 33 1 3.0798 1.3443 -0.1083 34 1 1.5611 1.9273 -0.8309 35 1 2.0963 4.5633 -0.1635 36 1 3.4341 4.7735 0.9917 37 1 3.3876 3.3422 -0.0653 38 1 1.5589 5.0483 2.6190 39 1 0.7317 3.5682 3.1608 40 1 1.5210 5.3403 6.2904 41 1 3.0797 -0.6611 -1.1756 42 1 1.5611 -0.3873 -2.0628 43 1 -0.4201 -3.5032 2.1525 44 1 -1.0311 -5.8564 2.4750 45 1 -0.3747 -7.5589 0.8289 46 1 0.9064 -6.9301 -1.1711 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000024808832.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:27 Heat of formation + Delta-G solvation = 10.782886 kcal Electronic energy + Delta-G solvation = -29475.465378 eV Core-core repulsion = 25366.283225 eV Total energy + Delta-G solvation = -4109.182153 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.80428 -39.32546 -38.61361 -38.17031 -36.30566 -34.67803 -33.87898 -32.59998 -31.53403 -30.81270 -28.81164 -28.01300 -27.20445 -25.65497 -24.89706 -24.24245 -22.71249 -22.18710 -21.40015 -19.56113 -19.04259 -18.40224 -17.68018 -16.56847 -16.47065 -16.28759 -16.04967 -15.55547 -15.49584 -15.19917 -14.97737 -14.70935 -14.43707 -14.17877 -14.07433 -13.82992 -13.64146 -13.06681 -12.87049 -12.58915 -12.38920 -12.22345 -12.17243 -12.02817 -11.88183 -11.79017 -11.43276 -11.25339 -11.15169 -10.86958 -10.61664 -10.55233 -10.53215 -10.13098 -9.88836 -9.60491 -9.40265 -8.88696 -8.41010 -8.28093 -8.20450 -7.59997 -6.02048 -4.06539 0.26392 0.57301 1.94990 2.26409 2.51568 3.33695 3.38359 3.39742 3.47506 3.54677 3.59183 3.73630 4.00799 4.22354 4.39284 4.47991 4.57928 4.69131 4.85579 4.93179 4.98475 5.09476 5.12633 5.29412 5.32454 5.34053 5.38298 5.64517 5.66410 5.71016 5.77722 5.86353 5.90970 5.92019 6.08340 6.15000 6.18854 6.22961 6.50143 6.55922 6.86949 7.03859 7.12960 7.41719 7.46407 7.57049 7.73666 7.94662 8.25852 8.44632 8.93468 9.15783 9.58622 11.05985 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.014139 B = 0.002440 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.906044 B =11471.112655 C =12552.069949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.498 5.498 3 C 0.036 3.964 4 C 0.506 3.494 5 O -0.517 6.517 6 N -0.606 5.606 7 C 0.084 3.916 8 C 0.248 3.752 9 C -0.525 4.525 10 H 0.056 0.944 11 C 0.061 3.939 12 N -0.896 5.896 13 Si 0.897 3.103 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.276 1.276 17 C 0.098 3.902 18 C 0.392 3.608 19 N -0.476 5.476 20 C 0.155 3.845 21 C -0.104 4.104 22 C -0.074 4.074 23 C -0.142 4.142 24 C -0.044 4.044 25 C -0.204 4.204 26 C 0.554 3.446 27 O -0.519 6.519 28 N -0.652 5.652 29 H 0.417 0.583 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.009 0.991 33 H 0.098 0.902 34 H 0.057 0.943 35 H 0.043 0.957 36 H 0.073 0.927 37 H 0.054 0.946 38 H 0.031 0.969 39 H 0.043 0.957 40 H 0.263 0.737 41 H 0.109 0.891 42 H 0.068 0.932 43 H 0.145 0.855 44 H 0.134 0.866 45 H 0.131 0.869 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.530 -15.523 -17.087 23.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.222 5.222 3 C -0.095 4.095 4 C 0.291 3.709 5 O -0.392 6.392 6 N -0.340 5.340 7 C -0.060 4.060 8 C 0.128 3.872 9 C -0.564 4.564 10 H 0.075 0.925 11 C -0.141 4.141 12 N -0.535 5.535 13 Si 0.725 3.275 14 H -0.203 1.203 15 H -0.212 1.212 16 H -0.201 1.201 17 C -0.032 4.032 18 C 0.123 3.877 19 N -0.196 5.196 20 C 0.046 3.954 21 C -0.123 4.123 22 C -0.093 4.093 23 C -0.160 4.160 24 C -0.064 4.064 25 C -0.210 4.210 26 C 0.347 3.653 27 O -0.394 6.394 28 N -0.297 5.297 29 H 0.255 0.745 30 H 0.106 0.894 31 H 0.112 0.888 32 H 0.028 0.972 33 H 0.116 0.884 34 H 0.075 0.925 35 H 0.061 0.939 36 H 0.092 0.908 37 H 0.073 0.927 38 H 0.049 0.951 39 H 0.061 0.939 40 H 0.073 0.927 41 H 0.127 0.873 42 H 0.086 0.914 43 H 0.163 0.837 44 H 0.152 0.848 45 H 0.149 0.851 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.022 -16.124 -15.715 22.606 hybrid contribution 1.129 -0.044 -0.910 1.451 sum -0.893 -16.168 -16.626 23.208 Atomic orbital electron populations 1.22770 0.85343 1.04341 1.00624 1.61321 1.09966 1.11770 1.39118 1.22103 1.01364 0.88912 0.97101 1.20009 0.80944 0.81901 0.88072 1.90663 1.39467 1.62984 1.46111 1.48169 1.53986 1.12494 1.19352 1.21619 0.95646 0.97176 0.91579 1.19256 0.97273 0.92097 0.78534 1.21399 1.05397 1.32955 0.96628 0.92528 1.24929 0.95970 0.95065 0.98128 1.69921 1.28082 1.35009 1.20501 0.86569 0.81881 0.78605 0.80429 1.20313 1.21224 1.20121 1.21100 1.01895 0.85876 0.94369 1.22834 0.88523 0.92768 0.83562 1.68810 1.16806 1.16292 1.17692 1.18993 0.94754 0.87804 0.93880 1.21004 0.98132 0.96639 0.96540 1.21346 0.96949 0.92453 0.98593 1.21185 1.00140 1.00086 0.94601 1.20976 0.94450 0.94051 0.96902 1.20571 1.06710 0.96472 0.97207 1.18377 0.79502 0.81007 0.86444 1.90893 1.53914 1.52135 1.42468 1.44417 1.51718 1.08785 1.24785 0.74490 0.89392 0.88845 0.97242 0.88378 0.92491 0.93897 0.90772 0.92680 0.95123 0.93850 0.92697 0.87295 0.91402 0.83732 0.84791 0.85081 0.84713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 8.80 60.06 0.53 0.76 16 2 N -0.50 -6.64 4.16 -245.83 -1.02 -7.67 16 3 C 0.04 0.48 4.00 -4.98 -0.02 0.46 16 4 C 0.51 9.97 7.37 -10.99 -0.08 9.89 16 5 O -0.52 -12.58 13.91 5.56 0.08 -12.50 16 6 N -0.61 -12.32 2.86 -182.95 -0.52 -12.85 16 7 C 0.08 1.23 10.24 59.85 0.61 1.84 16 8 C 0.25 6.37 5.16 -5.19 -0.03 6.34 16 9 C -0.52 -14.78 9.39 -34.44 -0.32 -15.10 16 10 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 11 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 12 N -0.90 -26.56 13.29 55.43 0.74 -25.82 16 13 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16 14 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 15 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 16 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 17 C 0.10 0.85 5.37 -4.97 -0.03 0.83 16 18 C 0.39 4.10 7.37 -155.22 -1.14 2.95 16 19 N -0.48 -6.24 7.06 -8.19 -0.06 -6.30 16 20 C 0.15 1.96 6.63 -84.51 -0.56 1.40 16 21 C -0.10 -1.16 10.03 -39.27 -0.39 -1.56 16 22 C -0.07 -0.65 10.00 -39.55 -0.40 -1.04 16 23 C -0.14 -1.19 10.02 -39.52 -0.40 -1.59 16 24 C -0.04 -0.46 9.68 -39.35 -0.38 -0.84 16 25 C -0.20 -2.47 5.89 -104.78 -0.62 -3.08 16 26 C 0.55 6.68 7.99 -12.43 -0.10 6.58 16 27 O -0.52 -7.36 17.48 5.17 0.09 -7.27 16 28 N -0.65 -5.95 5.27 -10.46 -0.06 -6.01 16 29 H 0.42 2.45 8.75 -40.82 -0.36 2.09 16 30 H 0.09 1.22 5.64 -51.93 -0.29 0.93 16 31 H 0.09 1.63 5.82 -51.93 -0.30 1.32 16 32 H 0.01 0.11 8.14 -51.93 -0.42 -0.31 16 33 H 0.10 1.09 7.19 -51.93 -0.37 0.72 16 34 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 35 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 1.14 8.07 -51.92 -0.42 0.72 16 37 H 0.05 0.62 6.44 -51.93 -0.33 0.29 16 38 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 39 H 0.04 1.26 7.42 -51.93 -0.39 0.88 16 40 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16 41 H 0.11 0.70 7.93 -51.93 -0.41 0.29 16 42 H 0.07 0.41 8.12 -51.93 -0.42 -0.01 16 43 H 0.14 1.60 8.06 -52.48 -0.42 1.18 16 44 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16 45 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 46 H 0.14 1.26 7.83 -52.49 -0.41 0.85 16 LS Contribution 384.24 15.07 5.79 5.79 Total: -1.00 -37.09 384.24 -9.61 -46.70 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -6.21 Total: -0.42 kcal Atomic # 6 Polarization: 12.90 SS G_CDS: -3.42 Total: 9.48 kcal Atomic # 7 Polarization: -57.72 SS G_CDS: -0.92 Total: -58.64 kcal Atomic # 8 Polarization: -19.93 SS G_CDS: 0.17 Total: -19.77 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -37.09 -9.61 -46.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000024808832.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.482 kcal (2) G-P(sol) polarization free energy of solvation -37.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds