Wall clock time and date at job start Tue Mar 31 2020 05:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35984 * 117.00281 * 2 1 4 4 C 1.38722 * 119.99892 * 359.97438 * 3 2 1 5 5 C 1.38105 * 119.99969 * 180.02562 * 4 3 2 6 6 C 1.38723 * 120.00142 * 359.97438 * 5 4 3 7 7 O 1.35985 * 119.99778 * 180.02562 * 6 5 4 8 8 C 1.42891 * 117.00193 * 0.02562 * 7 6 5 9 9 C 1.38672 * 119.99775 * 0.28288 * 6 5 4 10 10 C 1.50707 * 119.99790 * 179.69900 * 9 6 5 11 11 H 1.08998 * 110.36346 * 39.30013 * 10 9 6 12 12 C 1.54379 * 110.40925 * 276.94585 * 10 9 6 13 13 C 1.54256 * 105.05746 * 217.36691 * 12 10 9 14 14 C 1.54375 * 105.06268 * 0.02562 * 13 12 10 15 15 N 1.48556 * 110.40900 * 161.64702 * 10 9 6 16 16 C 1.46898 * 111.00333 * 277.82168 * 15 10 9 17 17 C 1.52996 * 109.47458 * 170.00454 * 16 15 10 18 18 H 1.09005 * 109.47580 * 54.99669 * 17 16 15 19 19 C 1.47206 * 109.47046 * 294.99851 * 17 16 15 20 20 N 4.04526 * 143.49289 * 141.16545 * 2 1 3 21 21 C 1.52999 * 109.47505 * 174.99691 * 17 16 15 22 22 C 1.50701 * 109.47365 * 184.99541 * 21 17 16 23 23 H 1.08005 * 119.99903 * 0.02562 * 22 21 17 24 24 C 1.37877 * 119.99907 * 179.97438 * 22 21 17 25 25 N 1.31514 * 120.00199 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99928 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47034 * 90.00537 * 26 24 22 28 28 H 1.48506 * 109.47173 * 210.00721 * 26 24 22 29 29 H 1.48504 * 109.46957 * 330.00331 * 26 24 22 30 30 C 1.38158 * 120.00068 * 359.48261 * 9 6 5 31 31 H 1.08995 * 109.47461 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47515 * 300.00842 * 1 2 3 33 33 H 1.09006 * 109.47037 * 60.00803 * 1 2 3 34 34 H 1.07997 * 119.99649 * 0.02562 * 4 3 2 35 35 H 1.08000 * 119.99844 * 179.97438 * 5 4 3 36 36 H 1.09006 * 109.47331 * 179.97438 * 8 7 6 37 37 H 1.09002 * 109.47220 * 299.99839 * 8 7 6 38 38 H 1.08996 * 109.47672 * 59.99783 * 8 7 6 39 39 H 1.08997 * 110.32763 * 336.26910 * 12 10 9 40 40 H 1.09000 * 110.31716 * 98.47791 * 12 10 9 41 41 H 1.09002 * 110.32206 * 118.90318 * 13 12 10 42 42 H 1.09004 * 110.32781 * 241.10358 * 13 12 10 43 43 H 1.09007 * 110.41342 * 142.63055 * 14 13 12 44 44 H 1.09002 * 110.41425 * 265.06835 * 14 13 12 45 45 H 1.09008 * 109.46708 * 289.99785 * 16 15 10 46 46 H 1.08994 * 109.47180 * 50.00076 * 16 15 10 47 47 H 1.09001 * 109.46874 * 304.99910 * 21 17 16 48 48 H 1.09001 * 109.46889 * 64.99745 * 21 17 16 49 49 H 0.96992 * 120.00265 * 179.97438 * 25 24 22 50 50 H 1.07998 * 119.99960 * 180.20703 * 30 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2908 2.3750 -0.0005 5 6 1.9179 3.6055 -0.0011 6 6 3.3032 3.6781 -0.0005 7 8 3.9205 4.8898 -0.0005 8 6 3.0806 6.0458 -0.0005 9 6 4.0584 2.5151 -0.0054 10 6 5.5634 2.5940 -0.0117 11 1 5.9035 3.4026 0.6353 12 6 6.0858 2.7989 -1.4499 13 6 7.3802 1.9637 -1.5289 14 6 7.5308 1.3239 -0.1321 15 7 6.1517 1.3008 0.4224 16 6 6.1720 1.1970 1.8876 17 6 6.5468 -0.2300 2.2927 18 1 7.4922 -0.5043 1.8244 19 6 5.4931 -1.1582 1.8511 20 7 4.6804 -1.8747 1.5091 21 6 6.6899 -0.3074 3.8140 22 6 7.1779 -1.6790 4.2035 23 1 7.3674 -2.4212 3.4421 24 6 7.3833 -1.9861 5.5319 25 7 7.1530 -1.0822 6.4590 26 14 7.9888 -3.6860 6.0147 27 1 9.4735 -3.6938 6.0402 28 1 7.4687 -4.0326 7.3618 29 1 7.5054 -4.6830 5.0259 30 6 3.4312 1.2841 0.0000 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5140 0.8899 33 1 -0.3633 0.5137 -0.8901 34 1 0.2124 2.3185 -0.0005 35 1 1.3297 4.5113 -0.0019 36 1 3.6985 6.9439 -0.0001 37 1 2.4514 6.0378 -0.8905 38 1 2.4513 6.0378 0.8894 39 1 5.3559 2.4355 -2.1732 40 1 6.3034 3.8522 -1.6270 41 1 7.2858 1.1902 -2.2911 42 1 8.2333 2.6069 -1.7450 43 1 7.9239 0.3108 -0.2182 44 1 8.1806 1.9324 0.4969 45 1 6.9066 1.8940 2.2910 46 1 5.1856 1.4396 2.2827 47 1 7.4064 0.4422 4.1501 48 1 5.7225 -0.1201 4.2799 49 1 7.2972 -1.2984 7.3935 50 1 4.0194 0.3784 -0.0004 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000025233032.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:17 Heat of formation + Delta-G solvation = -20.814819 kcal Electronic energy + Delta-G solvation = -30875.997546 eV Core-core repulsion = 26868.985557 eV Total energy + Delta-G solvation = -4007.011989 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.68900 -39.10013 -38.81233 -36.38530 -36.01171 -33.80082 -32.53983 -31.92806 -30.34851 -29.91296 -28.07110 -27.07681 -26.91118 -26.40780 -23.58076 -22.58553 -21.90267 -21.69764 -20.60971 -20.12482 -18.12537 -17.52521 -16.88718 -16.57018 -16.32639 -15.90646 -15.54308 -15.49875 -15.43016 -14.77283 -14.52282 -14.32261 -14.09242 -13.84329 -13.22576 -13.06686 -12.89107 -12.86068 -12.73439 -12.51099 -12.37163 -12.17006 -11.89349 -11.83160 -11.71686 -11.63862 -11.46267 -11.24745 -11.09125 -11.06417 -10.93582 -10.65976 -10.57792 -10.46233 -10.41613 -10.40074 -10.08366 -9.46215 -9.16805 -8.80553 -8.41130 -8.30313 -7.68063 -6.04591 -4.07248 1.26434 1.50367 3.20316 3.32440 3.39200 3.40780 3.44473 3.71534 3.85416 3.94816 4.05153 4.45382 4.61132 4.72160 4.76868 4.82847 4.93156 4.97327 5.01364 5.02916 5.08136 5.10737 5.21263 5.26715 5.33578 5.36386 5.40487 5.43672 5.56193 5.59730 5.70529 5.71234 5.84938 5.90070 5.92974 6.00399 6.09164 6.13111 6.22949 6.23405 6.25940 6.43187 6.48262 6.57331 6.67917 7.07509 7.21151 7.27583 7.48955 7.54261 7.60302 7.91040 8.29195 8.70768 8.97652 9.57819 11.06415 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010494 B = 0.003330 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2667.667898 B = 8406.422157 C = 9491.030891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.309 6.309 3 C 0.092 3.908 4 C -0.176 4.176 5 C -0.174 4.174 6 C 0.092 3.908 7 O -0.314 6.314 8 C 0.029 3.971 9 C -0.062 4.062 10 C 0.112 3.888 11 H 0.070 0.930 12 C -0.109 4.109 13 C -0.123 4.123 14 C 0.032 3.968 15 N -0.510 5.510 16 C 0.051 3.949 17 C 0.014 3.986 18 H 0.099 0.901 19 C 0.251 3.749 20 N -0.472 5.472 21 C 0.031 3.969 22 C -0.523 4.523 23 H 0.057 0.943 24 C 0.062 3.938 25 N -0.892 5.892 26 Si 0.890 3.110 27 H -0.279 1.279 28 H -0.286 1.286 29 H -0.273 1.273 30 C -0.084 4.084 31 H 0.097 0.903 32 H 0.052 0.948 33 H 0.050 0.950 34 H 0.126 0.874 35 H 0.127 0.873 36 H 0.097 0.903 37 H 0.051 0.949 38 H 0.052 0.948 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.067 0.933 43 H 0.085 0.915 44 H 0.050 0.950 45 H 0.057 0.943 46 H 0.078 0.922 47 H 0.036 0.964 48 H 0.025 0.975 49 H 0.262 0.738 50 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.968 15.415 -16.341 23.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.223 6.223 3 C 0.047 3.953 4 C -0.195 4.195 5 C -0.192 4.192 6 C 0.047 3.953 7 O -0.227 6.227 8 C -0.066 4.066 9 C -0.064 4.064 10 C 0.004 3.996 11 H 0.087 0.913 12 C -0.147 4.147 13 C -0.161 4.161 14 C -0.096 4.096 15 N -0.234 5.234 16 C -0.078 4.078 17 C -0.008 4.008 18 H 0.116 0.884 19 C -0.066 4.066 20 N -0.149 5.149 21 C -0.007 4.007 22 C -0.561 4.561 23 H 0.075 0.925 24 C -0.140 4.140 25 N -0.531 5.531 26 Si 0.718 3.282 27 H -0.205 1.205 28 H -0.212 1.212 29 H -0.198 1.198 30 C -0.103 4.103 31 H 0.116 0.884 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.144 0.856 35 H 0.145 0.855 36 H 0.115 0.885 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.086 0.914 43 H 0.104 0.896 44 H 0.068 0.932 45 H 0.075 0.925 46 H 0.096 0.904 47 H 0.054 0.946 48 H 0.044 0.956 49 H 0.071 0.929 50 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -9.209 13.747 -16.850 23.616 hybrid contribution 0.376 0.296 1.036 1.141 sum -8.833 14.043 -15.814 22.920 Atomic orbital electron populations 1.22995 0.79109 1.03767 1.00731 1.86198 1.20657 1.26446 1.88969 1.19000 0.92458 0.84196 0.99638 1.20972 0.99730 0.91784 1.07004 1.20857 0.93014 0.98129 1.07235 1.18649 0.90686 0.84976 1.01036 1.86074 1.35252 1.12076 1.89347 1.22988 0.95881 0.86760 1.01007 1.18774 0.94729 0.89559 1.03306 1.21264 0.89817 0.91777 0.96730 0.91250 1.22245 0.97057 0.99945 0.95436 1.22298 0.97248 0.99110 0.97459 1.23157 0.90030 1.01537 0.94866 1.65282 1.16155 1.31209 1.10766 1.22412 1.02356 0.96438 0.86561 1.19150 0.92435 0.88230 1.00945 0.88358 1.28850 0.93611 0.93093 0.91033 1.81016 1.11419 1.10894 1.11540 1.19168 0.98394 0.98227 0.84938 1.21145 1.44911 0.97771 0.92301 0.92498 1.24945 0.95370 0.97033 0.96607 1.69940 1.48733 1.33830 1.00615 0.86610 0.78971 0.84695 0.77924 1.20516 1.21201 1.19826 1.20387 0.90940 0.98684 1.00254 0.88421 0.92964 0.93137 0.85600 0.85507 0.88491 0.93043 0.92923 0.91224 0.91159 0.91136 0.91428 0.89619 0.93159 0.92465 0.90360 0.94572 0.95650 0.92874 0.82868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.81 101.05 0.99 1.30 16 2 O -0.31 -4.82 10.50 -19.69 -0.21 -5.03 16 3 C 0.09 1.40 6.69 -39.24 -0.26 1.13 16 4 C -0.18 -2.18 9.03 -39.45 -0.36 -2.54 16 5 C -0.17 -2.01 9.03 -39.45 -0.36 -2.37 16 6 C 0.09 1.18 6.66 -39.24 -0.26 0.91 16 7 O -0.31 -3.57 9.74 -19.69 -0.19 -3.76 16 8 C 0.03 0.21 9.81 101.05 0.99 1.20 16 9 C -0.06 -0.89 4.61 -104.49 -0.48 -1.37 16 10 C 0.11 1.47 2.13 -67.22 -0.14 1.33 16 11 H 0.07 0.92 7.72 -51.93 -0.40 0.52 16 12 C -0.11 -1.20 6.54 -25.35 -0.17 -1.37 16 13 C -0.12 -1.26 7.00 -25.35 -0.18 -1.44 16 14 C 0.03 0.38 5.91 -2.13 -0.01 0.37 16 15 N -0.51 -7.29 3.38 -223.43 -0.75 -8.04 16 16 C 0.05 0.83 4.04 -3.83 -0.02 0.81 16 17 C 0.01 0.28 2.26 -93.41 -0.21 0.07 16 18 H 0.10 1.77 7.29 -51.93 -0.38 1.39 16 19 C 0.25 5.43 13.32 -20.76 -0.28 5.16 16 20 N -0.47 -11.00 18.54 42.16 0.78 -10.21 16 21 C 0.03 0.75 4.42 -27.88 -0.12 0.62 16 22 C -0.52 -14.19 8.60 -34.44 -0.30 -14.49 16 23 H 0.06 1.54 7.59 -52.48 -0.40 1.14 16 24 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 25 N -0.89 -25.94 13.29 55.43 0.74 -25.20 16 26 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 27 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 28 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 29 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 30 C -0.08 -1.35 9.13 -39.45 -0.36 -1.71 16 31 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.05 0.49 7.66 -51.93 -0.40 0.09 16 33 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 34 H 0.13 1.24 6.29 -52.49 -0.33 0.91 16 35 H 0.13 1.12 6.29 -52.49 -0.33 0.79 16 36 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.05 0.32 7.66 -51.93 -0.40 -0.08 16 38 H 0.05 0.36 7.66 -51.93 -0.40 -0.04 16 39 H 0.07 0.81 7.85 -51.93 -0.41 0.41 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.09 1.05 7.75 -51.92 -0.40 0.65 16 44 H 0.05 0.57 7.75 -51.93 -0.40 0.17 16 45 H 0.06 0.85 7.77 -51.92 -0.40 0.44 16 46 H 0.08 1.35 7.70 -51.93 -0.40 0.95 16 47 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 48 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 49 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 50 H 0.15 2.79 6.79 -52.49 -0.36 2.44 16 LS Contribution 407.50 15.07 6.14 6.14 Total: -1.00 -32.53 407.50 -8.03 -40.56 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -7.90 Total: -0.33 kcal Atomic # 6 Polarization: -9.11 SS G_CDS: -1.61 Total: -10.73 kcal Atomic # 7 Polarization: -44.22 SS G_CDS: 0.76 Total: -43.46 kcal Atomic # 8 Polarization: -8.40 SS G_CDS: -0.40 Total: -8.79 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -32.53 -8.03 -40.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000025233032.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.742 kcal (2) G-P(sol) polarization free energy of solvation -32.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds