Wall clock time and date at job start Tue Mar 31 2020 05:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35892 * 117.00306 * 2 1 4 4 C 1.38792 * 120.02488 * 0.02562 * 3 2 1 5 5 C 1.38154 * 120.05507 * 179.97438 * 4 3 2 6 6 C 1.38203 * 120.10726 * 0.04241 * 5 4 3 7 7 C 1.50705 * 119.97144 * 179.97438 * 6 5 4 8 8 H 1.09004 * 109.87960 * 144.42217 * 7 6 5 9 9 C 1.54316 * 109.88885 * 23.22063 * 7 6 5 10 10 C 1.55144 * 103.02045 * 218.31086 * 9 7 6 11 11 C 1.54916 * 101.64987 * 35.65200 * 10 9 7 12 12 N 1.47444 * 109.88854 * 265.45133 * 7 6 5 13 13 C 1.46903 * 110.99776 * 356.14669 * 12 7 6 14 14 C 1.52999 * 109.46971 * 177.77255 * 13 12 7 15 15 H 1.09008 * 109.47025 * 52.75239 * 14 13 12 16 16 C 1.47200 * 109.47372 * 292.75432 * 14 13 12 17 17 N 8.15792 * 98.43978 * 327.04396 * 2 1 3 18 18 C 1.52996 * 109.47444 * 172.75227 * 14 13 12 19 19 C 1.50697 * 109.47354 * 185.00325 * 18 14 13 20 20 H 1.07999 * 120.00345 * 0.02562 * 19 18 14 21 21 C 1.37888 * 119.99836 * 179.97438 * 19 18 14 22 22 N 1.31513 * 119.99800 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99713 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47083 * 90.00167 * 23 21 19 25 25 H 1.48501 * 109.47170 * 209.99930 * 23 21 19 26 26 H 1.48496 * 109.47139 * 330.00184 * 23 21 19 27 27 C 1.38748 * 120.05698 * 359.95650 * 6 5 4 28 28 O 1.35899 * 120.03218 * 179.97438 * 27 6 5 29 29 C 1.42896 * 117.00303 * 179.97438 * 28 27 6 30 30 C 1.38616 * 120.03051 * 179.72252 * 3 2 1 31 31 H 1.09004 * 109.47030 * 299.99530 * 1 2 3 32 32 H 1.09000 * 109.46986 * 59.99741 * 1 2 3 33 33 H 1.09001 * 109.47285 * 180.02562 * 1 2 3 34 34 H 1.07996 * 119.97626 * 359.97438 * 4 3 2 35 35 H 1.07997 * 119.95149 * 180.02562 * 5 4 3 36 36 H 1.09002 * 110.70420 * 336.69405 * 9 7 6 37 37 H 1.09003 * 110.70788 * 99.92891 * 9 7 6 38 38 H 1.08996 * 110.98811 * 277.56326 * 10 9 7 39 39 H 1.08990 * 110.99257 * 153.74233 * 10 9 7 40 40 H 1.08997 * 110.36956 * 204.10036 * 11 10 9 41 41 H 1.09003 * 110.36948 * 81.76535 * 11 10 9 42 42 H 1.08995 * 109.47439 * 297.77025 * 13 12 7 43 43 H 1.09002 * 109.47060 * 57.78212 * 13 12 7 44 44 H 1.09006 * 109.47035 * 305.00259 * 18 14 13 45 45 H 1.09002 * 109.46987 * 64.99777 * 18 14 13 46 46 H 0.97000 * 119.99159 * 180.02562 * 22 21 19 47 47 H 1.08995 * 109.47101 * 300.00258 * 29 28 27 48 48 H 1.08995 * 109.46798 * 60.00316 * 29 28 27 49 49 H 1.08997 * 109.47144 * 180.02562 * 29 28 27 50 50 H 1.08001 * 120.05095 * 0.02820 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2906 2.3751 0.0005 5 6 1.9173 3.6064 0.0011 6 6 3.2972 3.6820 0.0002 7 6 3.9776 5.0267 0.0002 8 1 4.8892 4.9809 0.5960 9 6 3.0250 6.0970 0.5733 10 6 3.3133 7.3343 -0.3171 11 6 3.5754 6.6746 -1.6941 12 7 4.3012 5.4251 -1.3820 13 6 3.9505 4.3612 -2.3323 14 6 4.2485 4.8317 -3.7574 15 1 5.2775 5.1866 -3.8151 16 6 3.3312 5.9261 -4.1147 17 7 2.6263 6.7711 -4.3898 18 6 4.0555 3.6665 -4.7300 19 6 4.4666 4.0950 -6.1151 20 1 4.8296 5.0979 -6.2847 21 6 4.3802 3.2062 -7.1657 22 7 3.9386 1.9848 -6.9591 23 14 4.8890 3.7377 -8.8828 24 1 6.3321 3.4498 -9.0827 25 1 4.0914 2.9912 -9.8887 26 1 4.6482 5.1943 -9.0418 27 6 4.0568 2.5209 -0.0003 28 8 5.4137 2.5958 -0.0017 29 6 6.1317 1.3603 -0.0016 30 6 3.4302 1.2840 0.0058 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 0.2121 2.3187 0.0005 35 1 1.3279 4.5114 0.0019 36 1 1.9863 5.7826 0.4716 37 1 3.2647 6.3079 1.6155 38 1 4.1953 7.8704 0.0332 39 1 2.4477 7.9953 -0.3592 40 1 4.1901 7.3255 -2.3158 41 1 2.6325 6.4513 -2.1934 42 1 4.5387 3.4701 -2.1135 43 1 2.8896 4.1278 -2.2412 44 1 4.6695 2.8234 -4.4133 45 1 3.0068 3.3696 -4.7377 46 1 3.8782 1.3595 -7.6983 47 1 5.8708 0.7886 0.8890 48 1 5.8691 0.7875 -0.8910 49 1 7.2027 1.5625 -0.0023 50 1 4.0196 0.3790 0.0099 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000025301335.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:42 Heat of formation + Delta-G solvation = -3.875935 kcal Electronic energy + Delta-G solvation = -31499.436738 eV Core-core repulsion = 27493.159274 eV Total energy + Delta-G solvation = -4006.277464 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.03286 -39.40959 -38.77186 -36.72531 -35.89768 -33.97403 -32.51385 -31.51334 -30.60138 -30.02644 -28.20489 -27.29095 -26.58061 -26.27665 -23.56202 -22.96106 -22.06573 -21.76091 -20.52664 -19.65092 -18.74439 -17.09600 -16.76957 -16.47594 -16.27417 -16.08825 -15.80479 -15.62822 -15.44626 -14.93982 -14.82911 -14.47573 -14.00764 -13.96385 -13.36329 -13.10170 -13.04426 -12.80189 -12.48992 -12.37798 -12.28205 -12.19729 -12.17081 -11.91452 -11.70743 -11.55760 -11.34460 -11.21253 -11.11390 -10.93974 -10.85088 -10.65701 -10.62328 -10.55465 -10.39041 -10.35772 -10.14384 -9.47537 -9.15646 -8.59838 -8.41408 -8.11675 -7.86087 -6.05331 -4.08130 1.30635 1.39508 3.06382 3.31547 3.34529 3.37985 3.42986 3.63051 3.64711 3.71044 4.29503 4.44854 4.59350 4.65835 4.79768 4.81740 4.91347 4.97299 4.97628 5.03199 5.06373 5.19466 5.20855 5.30186 5.32400 5.34680 5.45591 5.50598 5.55271 5.58113 5.60621 5.73018 5.82732 5.84777 5.94467 6.00292 6.12716 6.17081 6.27405 6.30936 6.35635 6.47851 6.49225 6.55864 6.65450 7.18725 7.23622 7.32545 7.42557 7.50279 7.59690 7.89931 8.28314 8.46677 8.96351 9.56774 11.05537 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.008599 B = 0.004093 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3255.517456 B = 6838.703215 C = 8289.583828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.316 6.316 3 C 0.167 3.833 4 C -0.242 4.242 5 C -0.044 4.044 6 C -0.162 4.162 7 C 0.128 3.872 8 H 0.096 0.904 9 C -0.145 4.145 10 C -0.128 4.128 11 C 0.029 3.971 12 N -0.513 5.513 13 C 0.064 3.936 14 C 0.002 3.998 15 H 0.109 0.891 16 C 0.252 3.748 17 N -0.483 5.483 18 C 0.036 3.964 19 C -0.524 4.524 20 H 0.056 0.944 21 C 0.062 3.938 22 N -0.892 5.892 23 Si 0.890 3.110 24 H -0.278 1.278 25 H -0.286 1.286 26 H -0.274 1.274 27 C 0.182 3.818 28 O -0.299 6.299 29 C 0.024 3.976 30 C -0.241 4.241 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.099 0.901 34 H 0.127 0.873 35 H 0.134 0.866 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.079 0.921 41 H 0.054 0.946 42 H 0.092 0.908 43 H 0.040 0.960 44 H 0.037 0.963 45 H 0.022 0.978 46 H 0.262 0.738 47 H 0.053 0.947 48 H 0.061 0.939 49 H 0.101 0.899 50 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.194 -1.879 20.911 21.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.229 6.229 3 C 0.121 3.879 4 C -0.261 4.261 5 C -0.062 4.062 6 C -0.164 4.164 7 C 0.021 3.979 8 H 0.114 0.886 9 C -0.183 4.183 10 C -0.166 4.166 11 C -0.099 4.099 12 N -0.237 5.237 13 C -0.065 4.065 14 C -0.020 4.020 15 H 0.126 0.874 16 C -0.064 4.064 17 N -0.161 5.161 18 C -0.003 4.003 19 C -0.562 4.562 20 H 0.075 0.925 21 C -0.139 4.139 22 N -0.530 5.530 23 Si 0.718 3.282 24 H -0.204 1.204 25 H -0.212 1.212 26 H -0.199 1.199 27 C 0.135 3.865 28 O -0.211 6.211 29 C -0.071 4.071 30 C -0.260 4.260 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.117 0.883 34 H 0.145 0.855 35 H 0.151 0.849 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.097 0.903 41 H 0.072 0.928 42 H 0.111 0.889 43 H 0.058 0.942 44 H 0.056 0.944 45 H 0.040 0.960 46 H 0.071 0.929 47 H 0.071 0.929 48 H 0.080 0.920 49 H 0.120 0.880 50 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -2.528 -0.716 20.342 20.511 hybrid contribution -0.667 -0.601 -1.052 1.383 sum -3.196 -1.317 19.290 19.597 Atomic orbital electron populations 1.23068 0.78229 1.03890 1.01545 1.86048 1.21533 1.27016 1.88348 1.18653 0.91552 0.84112 0.93568 1.21069 0.99986 0.92081 1.12998 1.20783 0.93130 0.97283 0.94997 1.19342 0.92881 0.93960 1.10237 1.21155 0.96941 0.88948 0.90904 0.88589 1.23092 1.00031 0.95297 0.99863 1.22688 1.01635 0.97064 0.95205 1.23448 0.97618 0.91880 0.96949 1.63990 1.54978 1.03548 1.01135 1.22438 0.99568 0.94626 0.89884 1.19397 0.95927 0.91754 0.94894 0.87358 1.29065 0.93439 0.93212 0.90704 1.80959 1.11319 1.12586 1.11226 1.19118 0.98243 0.90784 0.92165 1.21152 1.43886 0.98407 0.92758 0.92541 1.24950 0.95053 0.94882 0.99053 1.69951 1.46225 1.04873 1.31980 0.86608 0.78603 0.78806 0.84175 1.20439 1.21206 1.19877 1.18388 0.82799 0.92235 0.93063 1.86174 1.14710 1.32487 1.87773 1.23122 0.96919 0.85510 1.01548 1.20357 0.92667 0.97589 1.15387 0.92713 0.92279 0.88290 0.85490 0.84851 0.90729 0.90761 0.90739 0.91202 0.90270 0.92758 0.88938 0.94172 0.94440 0.95962 0.92886 0.92865 0.92016 0.88015 0.84535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.32 -3.94 10.49 -19.40 -0.20 -4.15 16 3 C 0.17 2.21 6.68 -39.24 -0.26 1.95 16 4 C -0.24 -2.97 9.04 -39.41 -0.36 -3.33 16 5 C -0.04 -0.54 8.20 -39.63 -0.32 -0.87 16 6 C -0.16 -2.16 3.26 -104.44 -0.34 -2.50 16 7 C 0.13 1.66 3.36 -67.87 -0.23 1.43 16 8 H 0.10 1.26 7.73 -51.93 -0.40 0.86 16 9 C -0.14 -1.58 6.30 -24.91 -0.16 -1.74 16 10 C -0.13 -1.50 7.08 -24.59 -0.17 -1.67 16 11 C 0.03 0.43 4.66 -2.30 -0.01 0.42 16 12 N -0.51 -7.77 5.26 -224.72 -1.18 -8.95 16 13 C 0.06 1.09 3.46 -3.82 -0.01 1.08 16 14 C 0.00 0.04 2.31 -93.41 -0.22 -0.17 16 15 H 0.11 2.11 8.14 -51.92 -0.42 1.69 16 16 C 0.25 5.33 10.02 -20.82 -0.21 5.12 16 17 N -0.48 -10.72 17.57 42.09 0.74 -9.98 16 18 C 0.04 0.87 4.42 -27.89 -0.12 0.74 16 19 C -0.52 -14.35 8.60 -34.44 -0.30 -14.65 16 20 H 0.06 1.54 7.59 -52.49 -0.40 1.14 16 21 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 22 N -0.89 -26.00 13.29 55.43 0.74 -25.27 16 23 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 26 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 27 C 0.18 2.45 5.19 -39.24 -0.20 2.25 16 28 O -0.30 -3.86 9.12 -19.42 -0.18 -4.03 16 29 C 0.02 0.23 9.81 101.05 0.99 1.22 16 30 C -0.24 -3.18 8.97 -39.29 -0.35 -3.54 16 31 H 0.05 0.38 7.66 -51.93 -0.40 -0.01 16 32 H 0.06 0.50 7.66 -51.93 -0.40 0.10 16 33 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.13 1.28 6.29 -52.49 -0.33 0.95 16 35 H 0.13 1.48 5.57 -52.49 -0.29 1.19 16 36 H 0.07 0.78 5.00 -51.93 -0.26 0.52 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.08 1.28 7.50 -51.93 -0.39 0.89 16 41 H 0.05 0.92 5.48 -51.93 -0.28 0.64 16 42 H 0.09 1.62 5.94 -51.93 -0.31 1.31 16 43 H 0.04 0.72 6.44 -51.93 -0.33 0.39 16 44 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 45 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 46 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 47 H 0.05 0.42 7.65 -51.93 -0.40 0.02 16 48 H 0.06 0.61 7.67 -51.93 -0.40 0.21 16 49 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 50 H 0.14 1.61 6.30 -52.49 -0.33 1.28 16 LS Contribution 391.13 15.07 5.89 5.89 Total: -1.00 -31.84 391.13 -8.03 -39.87 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -7.44 Total: 1.30 kcal Atomic # 6 Polarization: -9.97 SS G_CDS: -1.38 Total: -11.35 kcal Atomic # 7 Polarization: -44.49 SS G_CDS: 0.29 Total: -44.20 kcal Atomic # 8 Polarization: -7.80 SS G_CDS: -0.38 Total: -8.18 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.84 -8.03 -39.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000025301335.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.998 kcal (2) G-P(sol) polarization free energy of solvation -31.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds