Wall clock time and date at job start Tue Mar 31 2020 05:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35896 * 117.00072 * 2 1 4 4 C 1.38796 * 120.02569 * 0.02562 * 3 2 1 5 5 C 1.38156 * 120.05354 * 179.97438 * 4 3 2 6 6 C 1.38205 * 120.10905 * 0.04565 * 5 4 3 7 7 C 1.50692 * 119.97030 * 179.97438 * 6 5 4 8 8 H 1.09008 * 110.33224 * 147.25606 * 7 6 5 9 9 C 1.54906 * 110.37378 * 269.62491 * 7 6 5 10 10 C 1.55135 * 101.65392 * 155.90450 * 9 7 6 11 11 C 1.54317 * 103.02063 * 324.34448 * 10 9 7 12 12 N 1.47445 * 107.23008 * 22.28519 * 11 10 9 13 13 C 1.46902 * 110.99857 * 123.25698 * 12 11 10 14 14 C 1.53004 * 109.46972 * 172.91172 * 13 12 11 15 15 H 1.08997 * 109.47182 * 53.99900 * 14 13 12 16 16 C 1.47196 * 109.47102 * 293.99314 * 14 13 12 17 17 N 5.40903 * 79.22158 * 30.03577 * 2 1 3 18 18 C 1.53001 * 109.47007 * 173.99289 * 14 13 12 19 19 C 1.50702 * 109.47094 * 184.99932 * 18 14 13 20 20 H 1.07995 * 119.99675 * 359.97438 * 19 18 14 21 21 C 1.37879 * 119.99820 * 180.02562 * 19 18 14 22 22 N 1.31513 * 120.00140 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99699 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47535 * 89.99660 * 23 21 19 25 25 H 1.48501 * 109.46874 * 209.99741 * 23 21 19 26 26 H 1.48499 * 109.47153 * 329.99343 * 23 21 19 27 27 C 1.38751 * 120.05365 * 359.97438 * 6 5 4 28 28 O 1.35900 * 120.02696 * 180.02562 * 27 6 5 29 29 C 1.42904 * 116.99793 * 180.02562 * 28 27 6 30 30 C 1.38610 * 120.02597 * 179.72765 * 3 2 1 31 31 H 1.09001 * 109.46641 * 299.99457 * 1 2 3 32 32 H 1.08993 * 109.47238 * 59.99658 * 1 2 3 33 33 H 1.08998 * 109.46753 * 179.97438 * 1 2 3 34 34 H 1.07997 * 119.97717 * 359.97438 * 4 3 2 35 35 H 1.07993 * 119.94747 * 180.02562 * 5 4 3 36 36 H 1.09007 * 110.99125 * 273.99630 * 9 7 6 37 37 H 1.08998 * 110.98824 * 37.80785 * 9 7 6 38 38 H 1.09000 * 110.70989 * 205.96540 * 10 9 7 39 39 H 1.08997 * 110.85974 * 82.79673 * 10 9 7 40 40 H 1.09004 * 109.89320 * 262.88471 * 11 10 9 41 41 H 1.09001 * 109.89189 * 141.68837 * 11 10 9 42 42 H 1.09000 * 109.47131 * 292.90940 * 13 12 11 43 43 H 1.09004 * 109.47011 * 52.91273 * 13 12 11 44 44 H 1.08992 * 109.47515 * 305.00274 * 18 14 13 45 45 H 1.09003 * 109.47010 * 64.99893 * 18 14 13 46 46 H 0.97003 * 119.99869 * 180.02562 * 22 21 19 47 47 H 1.08997 * 109.46638 * 179.97438 * 29 28 27 48 48 H 1.08993 * 109.47016 * 299.99860 * 29 28 27 49 49 H 1.09000 * 109.47177 * 59.99986 * 29 28 27 50 50 H 1.07999 * 120.05471 * 0.02562 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2906 2.3752 0.0005 5 6 1.9173 3.6065 0.0011 6 6 3.2972 3.6821 0.0001 7 6 3.9775 5.0268 0.0001 8 1 4.9160 4.9765 0.5523 9 6 4.2284 5.5042 -1.4520 10 6 4.3101 7.0423 -1.2665 11 6 3.2750 7.3138 -0.1546 12 7 3.0895 6.0529 0.5868 13 6 3.3705 6.2369 2.0169 14 6 2.9993 4.9624 2.7777 15 1 3.5067 4.1095 2.3271 16 6 1.5431 4.7581 2.7116 17 7 0.4175 4.6001 2.6597 18 6 3.4295 5.0976 4.2397 19 6 3.1761 3.7984 4.9601 20 1 2.7504 2.9603 4.4284 21 6 3.4868 3.6801 6.2982 22 7 4.0047 4.7009 6.9458 23 14 3.1733 2.0695 7.1910 24 1 4.3767 1.2053 7.0902 25 1 2.8800 2.3449 8.6204 26 1 2.0140 1.3780 6.5721 27 6 4.0568 2.5210 -0.0008 28 8 5.4137 2.5959 -0.0012 29 6 6.1317 1.3604 -0.0028 30 6 3.4302 1.2840 0.0057 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 0.2121 2.3188 0.0005 35 1 1.3278 4.5114 0.0019 36 1 5.1676 5.1069 -1.8369 37 1 3.3961 5.2329 -2.1015 38 1 4.0316 7.5568 -2.1862 39 1 5.3077 7.3421 -0.9457 40 1 2.3290 7.6265 -0.5969 41 1 3.6466 8.0877 0.5171 42 1 4.4313 6.4464 2.1547 43 1 2.7827 7.0719 2.3982 44 1 4.4918 5.3371 4.2853 45 1 2.8568 5.8942 4.7148 46 1 4.2236 4.6176 7.8871 47 1 7.2027 1.5626 -0.0034 48 1 5.8703 0.7872 0.8866 49 1 5.8697 0.7890 -0.8933 50 1 4.0196 0.3791 0.0097 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000025301338.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:48 Heat of formation + Delta-G solvation = -20.520160 kcal Electronic energy + Delta-G solvation = -31782.770855 eV Core-core repulsion = 27775.771644 eV Total energy + Delta-G solvation = -4006.999211 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.62482 -39.20048 -38.68366 -36.17899 -36.15165 -33.76640 -32.48404 -31.42881 -30.36161 -30.06278 -28.11073 -27.19060 -26.65467 -26.24359 -23.41237 -22.51574 -21.91809 -21.46211 -20.92836 -19.87456 -18.56570 -16.95849 -16.55556 -16.38685 -16.20627 -15.87661 -15.81474 -15.43684 -15.36400 -14.84912 -14.61208 -14.32611 -13.93865 -13.59242 -13.43967 -13.03868 -12.97394 -12.70301 -12.57092 -12.31940 -12.26944 -12.04561 -11.82708 -11.77404 -11.69401 -11.55332 -11.30906 -11.13248 -11.08239 -11.07199 -10.92390 -10.72184 -10.61415 -10.52941 -10.45524 -10.31320 -10.07556 -9.45385 -9.15911 -8.40959 -8.37870 -8.14958 -7.70021 -6.04916 -4.06913 1.59389 1.62002 3.21672 3.31336 3.37819 3.43452 3.47466 3.82268 3.86806 3.91871 4.11812 4.45169 4.68530 4.83124 4.97079 4.98425 5.06050 5.07861 5.10229 5.17453 5.21884 5.24295 5.27154 5.33237 5.44456 5.49213 5.50262 5.57932 5.59497 5.66687 5.70082 5.71356 5.82146 5.88453 5.98522 6.00153 6.08261 6.13167 6.27684 6.35419 6.50523 6.52154 6.61042 6.72520 6.81346 7.19949 7.29069 7.36280 7.48775 7.57434 7.59505 7.91087 8.29826 8.67891 8.97710 9.57865 11.06150 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.007564 B = 0.005077 C = 0.003982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3700.675161 B = 5513.659965 C = 7029.249158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.320 6.320 3 C 0.160 3.840 4 C -0.241 4.241 5 C -0.010 4.010 6 C -0.135 4.135 7 C 0.125 3.875 8 H 0.074 0.926 9 C -0.116 4.116 10 C -0.141 4.141 11 C 0.044 3.956 12 N -0.531 5.531 13 C 0.059 3.941 14 C 0.007 3.993 15 H 0.101 0.899 16 C 0.261 3.739 17 N -0.482 5.482 18 C 0.032 3.968 19 C -0.520 4.520 20 H 0.055 0.945 21 C 0.063 3.937 22 N -0.892 5.892 23 Si 0.888 3.112 24 H -0.279 1.279 25 H -0.286 1.286 26 H -0.274 1.274 27 C 0.169 3.831 28 O -0.308 6.308 29 C 0.026 3.974 30 C -0.244 4.244 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.096 0.904 34 H 0.124 0.876 35 H 0.140 0.860 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.067 0.933 40 H 0.074 0.926 41 H 0.057 0.943 42 H 0.054 0.946 43 H 0.079 0.921 44 H 0.035 0.965 45 H 0.025 0.975 46 H 0.261 0.739 47 H 0.098 0.902 48 H 0.058 0.942 49 H 0.053 0.947 50 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.484 -1.677 -19.376 19.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.233 6.233 3 C 0.115 3.885 4 C -0.260 4.260 5 C -0.028 4.028 6 C -0.137 4.137 7 C 0.017 3.983 8 H 0.092 0.908 9 C -0.154 4.154 10 C -0.180 4.180 11 C -0.083 4.083 12 N -0.255 5.255 13 C -0.070 4.070 14 C -0.014 4.014 15 H 0.119 0.881 16 C -0.055 4.055 17 N -0.159 5.159 18 C -0.007 4.007 19 C -0.558 4.558 20 H 0.073 0.927 21 C -0.139 4.139 22 N -0.531 5.531 23 Si 0.716 3.284 24 H -0.205 1.205 25 H -0.211 1.211 26 H -0.199 1.199 27 C 0.123 3.877 28 O -0.221 6.221 29 C -0.069 4.069 30 C -0.263 4.263 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.115 0.885 34 H 0.142 0.858 35 H 0.158 0.842 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.093 0.907 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.097 0.903 44 H 0.054 0.946 45 H 0.043 0.957 46 H 0.071 0.929 47 H 0.117 0.883 48 H 0.077 0.923 49 H 0.071 0.929 50 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.536 -2.031 -19.306 19.420 hybrid contribution 0.801 -0.861 0.958 1.517 sum 1.337 -2.892 -18.348 18.623 Atomic orbital electron populations 1.23036 0.78368 1.03559 1.01681 1.86006 1.21434 1.27274 1.88614 1.18654 0.91516 0.84066 0.94276 1.21144 0.99970 0.92252 1.12593 1.20696 0.93028 0.97232 0.91864 1.18848 0.92839 0.92044 1.09969 1.21150 0.93739 0.88662 0.94710 0.90831 1.22692 1.02062 0.94565 0.96061 1.22779 0.99495 0.96502 0.99175 1.22757 0.98773 0.91665 0.95130 1.63425 1.52771 1.06327 1.02991 1.22428 1.00069 0.98028 0.86460 1.19277 0.83143 0.97989 1.01041 0.88131 1.28850 0.94772 0.91719 0.90196 1.81015 1.13132 1.10055 1.11728 1.19164 0.97490 0.98165 0.85851 1.21120 1.41956 0.97901 0.94836 0.92670 1.24926 0.95024 0.96415 0.97519 1.69940 1.43178 1.30120 1.09899 0.86639 0.78728 0.84045 0.78992 1.20507 1.21141 1.19888 1.18402 0.82255 0.92494 0.94597 1.86082 1.15219 1.32410 1.88394 1.23059 0.96626 0.85708 1.01487 1.20216 0.92553 0.97274 1.16281 0.92318 0.92732 0.88511 0.85809 0.84229 0.90783 0.90864 0.91054 0.91427 0.90727 0.92434 0.92746 0.90256 0.94637 0.95698 0.92892 0.88338 0.92294 0.92876 0.84950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.81 101.05 0.99 1.31 16 2 O -0.32 -4.69 10.49 -19.41 -0.20 -4.89 16 3 C 0.16 2.51 6.68 -39.24 -0.26 2.25 16 4 C -0.24 -3.77 9.04 -39.41 -0.36 -4.13 16 5 C -0.01 -0.16 7.10 -39.62 -0.28 -0.44 16 6 C -0.14 -2.05 3.10 -104.45 -0.32 -2.38 16 7 C 0.13 1.71 1.91 -67.34 -0.13 1.58 16 8 H 0.07 1.08 7.19 -51.92 -0.37 0.70 16 9 C -0.12 -1.28 6.48 -24.60 -0.16 -1.44 16 10 C -0.14 -1.35 6.94 -24.91 -0.17 -1.53 16 11 C 0.04 0.50 6.88 -2.84 -0.02 0.48 16 12 N -0.53 -7.41 3.38 -224.75 -0.76 -8.17 16 13 C 0.06 0.94 3.88 -3.82 -0.01 0.92 16 14 C 0.01 0.15 1.78 -93.41 -0.17 -0.02 16 15 H 0.10 2.04 5.91 -51.93 -0.31 1.74 16 16 C 0.26 5.59 11.30 -20.70 -0.23 5.36 16 17 N -0.48 -10.83 18.55 42.22 0.78 -10.05 16 18 C 0.03 0.77 4.42 -27.88 -0.12 0.65 16 19 C -0.52 -14.33 8.60 -34.44 -0.30 -14.62 16 20 H 0.06 1.55 7.59 -52.49 -0.40 1.15 16 21 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 22 N -0.89 -25.99 13.29 55.43 0.74 -25.26 16 23 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 27 C 0.17 2.53 6.66 -39.23 -0.26 2.27 16 28 O -0.31 -4.20 9.61 -19.43 -0.19 -4.38 16 29 C 0.03 0.26 9.81 101.05 0.99 1.26 16 30 C -0.24 -3.67 8.97 -39.29 -0.35 -4.02 16 31 H 0.06 0.69 7.66 -51.93 -0.40 0.30 16 32 H 0.05 0.53 7.66 -51.93 -0.40 0.13 16 33 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.12 1.80 6.29 -52.49 -0.33 1.47 16 35 H 0.14 2.29 7.01 -52.49 -0.37 1.92 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.82 8.05 -51.93 -0.42 0.41 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.06 0.61 7.58 -51.93 -0.39 0.22 16 42 H 0.05 0.81 7.93 -51.93 -0.41 0.40 16 43 H 0.08 1.24 8.10 -51.93 -0.42 0.82 16 44 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 47 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.06 0.61 7.64 -51.93 -0.40 0.22 16 49 H 0.05 0.46 7.68 -51.93 -0.40 0.06 16 50 H 0.13 1.76 6.30 -52.49 -0.33 1.43 16 LS Contribution 401.04 15.07 6.04 6.04 Total: -1.00 -31.86 401.04 -7.73 -39.59 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -7.86 Total: 1.09 kcal Atomic # 6 Polarization: -9.55 SS G_CDS: -1.27 Total: -10.82 kcal Atomic # 7 Polarization: -44.23 SS G_CDS: 0.76 Total: -43.47 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: -0.39 Total: -9.27 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -31.86 -7.73 -39.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000025301338.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.070 kcal (2) G-P(sol) polarization free energy of solvation -31.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds