Wall clock time and date at job start Tue Mar 31 2020 06:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.40559 * 120.61427 * 13.60033 * 3 2 1 5 5 N 1.38074 * 119.46411 * 359.95114 * 4 3 2 6 6 N 1.32371 * 121.07217 * 179.97438 * 4 3 2 7 7 C 1.32408 * 122.53488 * 359.97438 * 6 4 3 8 8 N 1.38066 * 119.46443 * 180.02562 * 7 6 4 9 9 C 1.47169 * 110.99944 * 255.09435 * 8 7 6 10 10 C 1.52893 * 108.51222 * 52.12834 * 9 8 7 11 11 C 1.50713 * 109.96228 * 50.32735 * 10 9 8 12 12 C 1.38685 * 118.48445 * 163.27174 * 11 10 9 13 13 C 1.38033 * 120.35036 * 179.82716 * 12 11 10 14 14 C 1.38268 * 119.82872 * 0.02562 * 13 12 11 15 15 C 1.38012 * 119.86516 * 0.05104 * 14 13 12 16 16 C 1.37827 * 121.66891 * 343.23002 * 11 10 9 17 17 C 1.46632 * 111.00166 * 18.06914 * 8 7 6 18 18 C 1.40522 * 121.06672 * 359.71995 * 7 6 4 19 19 C 1.43202 * 120.60924 * 180.28653 * 18 7 6 20 20 N 5.98338 * 146.57066 * 193.27032 * 2 1 3 21 21 C 1.42274 * 120.60972 * 193.57294 * 3 2 1 22 22 C 1.40448 * 121.11780 * 0.02740 * 21 3 2 23 23 H 1.08002 * 120.00014 * 317.23571 * 22 21 3 24 24 C 1.40521 * 120.00404 * 137.23363 * 22 21 3 25 25 N 1.30490 * 119.99845 * 332.11037 * 24 22 21 26 26 Si 1.86804 * 120.00070 * 152.10108 * 24 22 21 27 27 H 1.48501 * 109.46763 * 180.02562 * 26 24 22 28 28 H 1.48495 * 109.47203 * 300.00528 * 26 24 22 29 29 H 1.48496 * 109.46933 * 60.00674 * 26 24 22 30 30 H 0.97005 * 120.00037 * 0.02562 * 5 4 3 31 31 H 0.96998 * 120.00432 * 179.97438 * 5 4 3 32 32 H 1.09000 * 109.62929 * 171.83472 * 9 8 7 33 33 H 1.09003 * 109.63229 * 292.22337 * 9 8 7 34 34 H 1.08994 * 109.38934 * 170.48602 * 10 9 8 35 35 H 1.09000 * 109.38966 * 290.28243 * 10 9 8 36 36 H 1.08001 * 119.82612 * 359.84247 * 12 11 10 37 37 H 1.08004 * 120.08713 * 179.97438 * 13 12 11 38 38 H 1.08001 * 120.06605 * 180.02562 * 14 13 12 39 39 H 1.07998 * 119.81266 * 180.02562 * 15 14 13 40 40 H 1.09000 * 109.30112 * 49.45295 * 17 8 7 41 41 H 1.08999 * 109.30293 * 168.83252 * 17 8 7 42 42 H 0.97000 * 120.00046 * 353.74909 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2844 -1.1748 -0.2845 5 7 2.5961 -2.3385 -0.5649 6 7 4.6080 -1.1844 -0.2874 7 6 5.3285 -0.1044 -0.0273 8 7 6.7066 -0.1861 -0.0483 9 6 7.2558 -0.1861 1.3171 10 6 6.5455 -1.2718 2.1261 11 6 6.5675 -2.5748 1.3690 12 6 6.2979 -3.7462 2.0607 13 6 6.3042 -4.9607 1.4048 14 6 6.5813 -5.0098 0.0510 15 6 6.8513 -3.8448 -0.6379 16 6 6.8460 -2.6233 0.0201 17 6 7.1513 -1.3803 -0.7738 18 6 4.7133 1.1251 0.2635 19 6 5.5021 2.2884 0.5375 20 7 6.1295 3.2083 0.7566 21 6 3.2919 1.1913 0.2874 22 6 2.6261 2.3932 0.5782 23 1 1.7652 2.6881 -0.0034 24 6 3.0801 3.2122 1.6260 25 7 3.7080 2.6849 2.6411 26 14 2.7847 5.0558 1.5656 27 1 3.3571 5.6887 2.7809 28 1 3.4380 5.6224 0.3584 29 1 1.3248 5.3216 1.5093 30 1 1.6261 -2.3403 -0.5648 31 1 3.0826 -3.1540 -0.7626 32 1 8.3248 -0.3960 1.2819 33 1 7.0888 0.7870 1.7790 34 1 7.0522 -1.4002 3.0825 35 1 5.5116 -0.9744 2.3014 36 1 6.0816 -3.7080 3.1181 37 1 6.0941 -5.8704 1.9477 38 1 6.5869 -5.9579 -0.4661 39 1 7.0673 -3.8840 -1.6953 40 1 6.6375 -1.4306 -1.7338 41 1 8.2257 -1.3177 -0.9464 42 1 3.7823 1.7208 2.7178 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000025426721.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:50 Heat of formation + Delta-G solvation = 118.070434 kcal Electronic energy + Delta-G solvation = -30313.065268 eV Core-core repulsion = 26450.418461 eV Total energy + Delta-G solvation = -3862.646807 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.128 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -40.85745 -38.99639 -37.20499 -35.99641 -35.30549 -34.31594 -33.39228 -32.53931 -31.21432 -30.88422 -28.99262 -28.56826 -26.39822 -24.90639 -23.78978 -22.27369 -21.97390 -21.87461 -19.79762 -19.27657 -17.99624 -17.32902 -16.54015 -16.31134 -15.98253 -15.41348 -15.26744 -14.68827 -14.59100 -14.33560 -14.24572 -13.67862 -13.61683 -13.29211 -13.00529 -12.93776 -12.49554 -12.40697 -12.33391 -12.23321 -12.03409 -11.92040 -11.82802 -11.71575 -11.57064 -11.39477 -11.15421 -11.14216 -10.85267 -10.56476 -10.52355 -10.25790 -9.97533 -9.37633 -8.95840 -8.68357 -8.53843 -8.30895 -8.17006 -7.65685 -7.05441 -5.17417 1.58623 1.60707 1.61578 2.32207 3.04374 3.14167 3.26681 3.60906 3.65818 3.80276 3.85151 3.96056 4.04456 4.14522 4.34304 4.49947 4.85233 4.94958 5.02094 5.10371 5.14129 5.16575 5.24004 5.28343 5.40565 5.54491 5.58639 5.65051 5.69264 5.81071 5.92432 6.05409 6.10837 6.19201 6.20284 6.32788 6.45147 6.62394 6.67801 6.74516 6.85271 6.96513 6.99971 7.21654 7.34209 7.44646 7.61396 7.71684 7.98963 8.03115 8.22621 8.58051 8.84779 8.98519 9.61381 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.013212 B = 0.004792 C = 0.003959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.735120 B = 5841.194392 C = 7070.576887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C 0.304 3.696 3 C -0.272 4.272 4 C 0.500 3.500 5 N -0.848 5.848 6 N -0.624 5.624 7 C 0.419 3.581 8 N -0.475 5.475 9 C 0.062 3.938 10 C -0.115 4.115 11 C -0.059 4.059 12 C -0.118 4.118 13 C -0.130 4.130 14 C -0.127 4.127 15 C -0.115 4.115 16 C -0.059 4.059 17 C 0.102 3.898 18 C -0.211 4.211 19 C 0.312 3.688 20 N -0.479 5.479 21 C 0.203 3.797 22 C -0.489 4.489 23 H 0.096 0.904 24 C 0.050 3.950 25 N -0.743 5.743 26 Si 1.053 2.947 27 H -0.267 1.267 28 H -0.266 1.266 29 H -0.271 1.271 30 H 0.402 0.598 31 H 0.399 0.601 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.113 0.887 37 H 0.113 0.887 38 H 0.113 0.887 39 H 0.115 0.885 40 H 0.093 0.907 41 H 0.085 0.915 42 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.990 -11.746 -2.076 13.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.180 5.180 2 C -0.006 4.006 3 C -0.287 4.287 4 C 0.260 3.740 5 N -0.388 5.388 6 N -0.351 5.351 7 C 0.188 3.812 8 N -0.191 5.191 9 C -0.064 4.064 10 C -0.153 4.153 11 C -0.060 4.060 12 C -0.136 4.136 13 C -0.148 4.148 14 C -0.145 4.145 15 C -0.133 4.133 16 C -0.060 4.060 17 C -0.025 4.025 18 C -0.225 4.225 19 C -0.001 4.001 20 N -0.157 5.157 21 C 0.192 3.808 22 C -0.517 4.517 23 H 0.114 0.886 24 C -0.179 4.179 25 N -0.362 5.362 26 Si 0.875 3.125 27 H -0.191 1.191 28 H -0.191 1.191 29 H -0.196 1.196 30 H 0.232 0.768 31 H 0.228 0.772 32 H 0.103 0.897 33 H 0.107 0.893 34 H 0.097 0.903 35 H 0.102 0.898 36 H 0.131 0.869 37 H 0.131 0.869 38 H 0.131 0.869 39 H 0.133 0.867 40 H 0.111 0.889 41 H 0.103 0.897 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 7.219 -9.251 -1.313 11.808 hybrid contribution -1.196 -2.228 -0.424 2.565 sum 6.023 -11.479 -1.737 13.079 Atomic orbital electron populations 1.81079 1.12318 1.09356 1.15225 1.25303 0.92203 0.92008 0.91132 1.16189 0.84565 0.94275 1.33674 1.17663 0.87509 0.84474 0.84358 1.42124 1.08733 1.09882 1.78109 1.66968 1.04846 1.29094 1.34190 1.18845 0.87608 0.87150 0.87601 1.59828 1.05807 1.37625 1.15867 1.22280 0.98839 0.99527 0.85768 1.21118 1.02560 0.92899 0.98734 1.19340 0.98875 0.94420 0.93344 1.20963 1.00907 0.92248 0.99475 1.20912 1.01823 0.97280 0.94836 1.20922 1.01234 0.97804 0.94510 1.20886 1.01183 0.91961 0.99309 1.19925 0.97448 0.95386 0.93270 1.20954 1.00195 0.84403 0.96990 1.16244 0.91191 0.88412 1.26661 1.24801 0.91499 0.92063 0.91710 1.80925 1.11331 1.10777 1.12691 1.16993 0.88338 0.90431 0.85045 1.20659 1.13612 1.02208 1.15228 0.88644 1.27169 0.90894 1.08267 0.91528 1.70373 1.23126 1.17615 1.25100 0.83767 0.77759 0.72275 0.78698 1.19119 1.19079 1.19605 0.76836 0.77234 0.89717 0.89284 0.90308 0.89846 0.86923 0.86938 0.86886 0.86678 0.88872 0.89724 0.88781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -10.90 18.54 41.84 0.78 -10.12 16 2 C 0.30 6.40 13.19 -22.47 -0.30 6.11 16 3 C -0.27 -5.58 5.84 -105.55 -0.62 -6.20 16 4 C 0.50 8.97 7.74 -155.40 -1.20 7.76 16 5 N -0.85 -12.22 8.96 31.23 0.28 -11.94 16 6 N -0.62 -10.88 6.99 -11.33 -0.08 -10.96 16 7 C 0.42 7.74 4.31 -155.39 -0.67 7.07 16 8 N -0.47 -7.71 4.52 -174.52 -0.79 -8.50 16 9 C 0.06 0.93 5.73 -3.73 -0.02 0.90 16 10 C -0.11 -1.66 5.24 -27.93 -0.15 -1.80 16 11 C -0.06 -0.83 5.03 -104.60 -0.53 -1.36 16 12 C -0.12 -1.52 9.66 -39.49 -0.38 -1.90 16 13 C -0.13 -1.51 10.05 -39.65 -0.40 -1.91 16 14 C -0.13 -1.42 10.05 -39.65 -0.40 -1.81 16 15 C -0.11 -1.37 9.65 -39.48 -0.38 -1.75 16 16 C -0.06 -0.79 4.34 -104.63 -0.45 -1.24 16 17 C 0.10 1.39 5.20 -5.16 -0.03 1.37 16 18 C -0.21 -4.48 5.22 -105.54 -0.55 -5.03 16 19 C 0.31 7.01 9.92 -22.51 -0.22 6.79 16 20 N -0.48 -11.25 18.53 41.79 0.77 -10.47 16 21 C 0.20 4.51 4.87 -105.95 -0.52 4.00 16 22 C -0.49 -11.46 7.88 -37.89 -0.30 -11.76 16 23 H 0.10 2.26 7.87 -52.49 -0.41 1.85 16 24 C 0.05 1.16 3.82 -17.26 -0.07 1.09 16 25 N -0.74 -17.71 12.12 55.58 0.67 -17.04 16 26 Si 1.05 21.37 30.02 -169.99 -5.10 16.26 16 27 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 28 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 29 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 30 H 0.40 5.58 7.62 -40.82 -0.31 5.27 16 31 H 0.40 5.01 8.95 -40.82 -0.37 4.65 16 32 H 0.08 1.08 8.05 -51.93 -0.42 0.66 16 33 H 0.09 1.52 6.73 -51.93 -0.35 1.17 16 34 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.08 1.42 7.38 -51.93 -0.38 1.03 16 36 H 0.11 1.33 8.06 -52.49 -0.42 0.90 16 37 H 0.11 1.08 8.06 -52.48 -0.42 0.66 16 38 H 0.11 1.02 8.06 -52.49 -0.42 0.59 16 39 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 40 H 0.09 1.30 7.84 -51.93 -0.41 0.90 16 41 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.30 7.14 7.62 -40.82 -0.31 6.83 16 LS Contribution 359.29 15.07 5.41 5.41 Total: -1.00 -25.91 359.29 -9.52 -35.42 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: -4.29 Total: 11.61 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: -7.17 Total: 0.32 kcal Atomic # 7 Polarization: -70.67 SS G_CDS: 1.64 Total: -69.03 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.10 Total: 16.26 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -25.91 -9.52 -35.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000025426721.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.493 kcal (2) G-P(sol) polarization free energy of solvation -25.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds