Wall clock time and date at job start Tue Mar 31 2020 06:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.40559 * 120.61427 * 13.60033 * 3 2 1 5 5 N 1.38074 * 119.46411 * 359.95114 * 4 3 2 6 6 N 1.32371 * 121.07217 * 179.97438 * 4 3 2 7 7 C 1.32408 * 122.53488 * 359.97438 * 6 4 3 8 8 N 1.38066 * 119.46443 * 180.02562 * 7 6 4 9 9 C 1.47169 * 110.99944 * 255.09435 * 8 7 6 10 10 C 1.52893 * 108.51222 * 52.12834 * 9 8 7 11 11 C 1.50713 * 109.96228 * 50.32735 * 10 9 8 12 12 C 1.38685 * 118.48445 * 163.27174 * 11 10 9 13 13 C 1.38033 * 120.35036 * 179.82716 * 12 11 10 14 14 C 1.38268 * 119.82872 * 0.02562 * 13 12 11 15 15 C 1.38012 * 119.86516 * 0.05104 * 14 13 12 16 16 C 1.37827 * 121.66891 * 343.23002 * 11 10 9 17 17 C 1.46632 * 111.00166 * 18.06914 * 8 7 6 18 18 C 1.40522 * 121.06672 * 359.71995 * 7 6 4 19 19 C 1.43202 * 120.60924 * 180.28653 * 18 7 6 20 20 N 5.98338 * 146.57066 * 193.27032 * 2 1 3 21 21 C 1.42274 * 120.60972 * 193.57294 * 3 2 1 22 22 C 1.40448 * 121.11780 * 0.02740 * 21 3 2 23 23 H 1.08002 * 120.00014 * 317.23571 * 22 21 3 24 24 C 1.40521 * 120.00404 * 137.23363 * 22 21 3 25 25 N 1.30490 * 119.99845 * 332.11037 * 24 22 21 26 26 Si 1.86804 * 120.00070 * 152.10108 * 24 22 21 27 27 H 1.48501 * 109.46763 * 180.02562 * 26 24 22 28 28 H 1.48495 * 109.47203 * 300.00528 * 26 24 22 29 29 H 1.48496 * 109.46933 * 60.00674 * 26 24 22 30 30 H 0.97005 * 120.00037 * 0.02562 * 5 4 3 31 31 H 0.96998 * 120.00432 * 179.97438 * 5 4 3 32 32 H 1.09000 * 109.62929 * 171.83472 * 9 8 7 33 33 H 1.09003 * 109.63229 * 292.22337 * 9 8 7 34 34 H 1.08994 * 109.38934 * 170.48602 * 10 9 8 35 35 H 1.09000 * 109.38966 * 290.28243 * 10 9 8 36 36 H 1.08001 * 119.82612 * 359.84247 * 12 11 10 37 37 H 1.08004 * 120.08713 * 179.97438 * 13 12 11 38 38 H 1.08001 * 120.06605 * 180.02562 * 14 13 12 39 39 H 1.07998 * 119.81266 * 180.02562 * 15 14 13 40 40 H 1.09000 * 109.30112 * 49.45295 * 17 8 7 41 41 H 1.08999 * 109.30293 * 168.83252 * 17 8 7 42 42 H 0.97000 * 120.00046 * 353.74909 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2844 -1.1748 -0.2845 5 7 2.5961 -2.3385 -0.5649 6 7 4.6080 -1.1844 -0.2874 7 6 5.3285 -0.1044 -0.0273 8 7 6.7066 -0.1861 -0.0483 9 6 7.2558 -0.1861 1.3171 10 6 6.5455 -1.2718 2.1261 11 6 6.5675 -2.5748 1.3690 12 6 6.2979 -3.7462 2.0607 13 6 6.3042 -4.9607 1.4048 14 6 6.5813 -5.0098 0.0510 15 6 6.8513 -3.8448 -0.6379 16 6 6.8460 -2.6233 0.0201 17 6 7.1513 -1.3803 -0.7738 18 6 4.7133 1.1251 0.2635 19 6 5.5021 2.2884 0.5375 20 7 6.1295 3.2083 0.7566 21 6 3.2919 1.1913 0.2874 22 6 2.6261 2.3932 0.5782 23 1 1.7652 2.6881 -0.0034 24 6 3.0801 3.2122 1.6260 25 7 3.7080 2.6849 2.6411 26 14 2.7847 5.0558 1.5656 27 1 3.3571 5.6887 2.7809 28 1 3.4380 5.6224 0.3584 29 1 1.3248 5.3216 1.5093 30 1 1.6261 -2.3403 -0.5648 31 1 3.0826 -3.1540 -0.7626 32 1 8.3248 -0.3960 1.2819 33 1 7.0888 0.7870 1.7790 34 1 7.0522 -1.4002 3.0825 35 1 5.5116 -0.9744 2.3014 36 1 6.0816 -3.7080 3.1181 37 1 6.0941 -5.8704 1.9477 38 1 6.5869 -5.9579 -0.4661 39 1 7.0673 -3.8840 -1.6953 40 1 6.6375 -1.4306 -1.7338 41 1 8.2257 -1.3177 -0.9464 42 1 3.7823 1.7208 2.7178 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000025426721.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:49 Heat of formation + Delta-G solvation = 105.541002 kcal Electronic energy + Delta-G solvation = -30313.608585 eV Core-core repulsion = 26450.418461 eV Total energy + Delta-G solvation = -3863.190124 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.128 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.13969 -40.30988 -38.43812 -37.65202 -36.93868 -36.03920 -34.80114 -33.66951 -32.68921 -32.08350 -30.07794 -29.99606 -28.06386 -26.18483 -24.98637 -23.67426 -23.33718 -22.92143 -21.02338 -20.95990 -19.51455 -18.76119 -17.80760 -17.59690 -17.36696 -16.65631 -16.48044 -16.09566 -15.89487 -15.77575 -15.41346 -15.14359 -14.87604 -14.63519 -14.44668 -14.15212 -14.08462 -13.96410 -13.82192 -13.62657 -13.57268 -13.47721 -13.36525 -12.91467 -12.87154 -12.76551 -12.50135 -12.40709 -12.16989 -12.12234 -11.91043 -11.62784 -11.35493 -11.04159 -10.47439 -10.23742 -9.68088 -9.48176 -9.42206 -9.20319 -8.55845 -6.93674 0.04731 0.61984 0.65917 0.68325 1.39111 1.51028 1.64909 1.95496 2.03139 2.16286 2.29311 2.44165 2.58492 2.74549 2.90245 3.02422 3.43619 3.54476 3.73370 3.76262 3.92188 3.99188 4.02594 4.21524 4.26980 4.38034 4.49980 4.59331 4.65886 4.69318 4.81120 4.83689 4.90350 4.94100 5.07205 5.12246 5.26541 5.28884 5.33997 5.61277 5.64862 5.73503 5.78305 5.79654 5.91004 6.17654 6.22703 6.30177 6.39793 6.51934 6.65035 6.90265 7.15664 7.44948 7.83252 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.013212 B = 0.004792 C = 0.003959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.735120 B = 5841.194392 C = 7070.576887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C 0.311 3.689 3 C -0.289 4.289 4 C 0.509 3.491 5 N -0.824 5.824 6 N -0.603 5.603 7 C 0.440 3.560 8 N -0.485 5.485 9 C 0.066 3.934 10 C -0.107 4.107 11 C -0.078 4.078 12 C -0.130 4.130 13 C -0.132 4.132 14 C -0.123 4.123 15 C -0.116 4.116 16 C -0.070 4.070 17 C 0.101 3.899 18 C -0.241 4.241 19 C 0.322 3.678 20 N -0.508 5.508 21 C 0.204 3.796 22 C -0.524 4.524 23 H 0.084 0.916 24 C 0.031 3.969 25 N -0.765 5.765 26 Si 1.077 2.923 27 H -0.269 1.269 28 H -0.269 1.269 29 H -0.251 1.251 30 H 0.409 0.591 31 H 0.413 0.587 32 H 0.111 0.889 33 H 0.062 0.938 34 H 0.094 0.906 35 H 0.051 0.949 36 H 0.117 0.883 37 H 0.133 0.867 38 H 0.140 0.860 39 H 0.134 0.866 40 H 0.091 0.909 41 H 0.108 0.892 42 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.914 -14.685 -3.105 16.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.196 5.196 2 C 0.001 3.999 3 C -0.303 4.303 4 C 0.266 3.734 5 N -0.365 5.365 6 N -0.330 5.330 7 C 0.207 3.793 8 N -0.201 5.201 9 C -0.059 4.059 10 C -0.146 4.146 11 C -0.078 4.078 12 C -0.148 4.148 13 C -0.150 4.150 14 C -0.141 4.141 15 C -0.135 4.135 16 C -0.072 4.072 17 C -0.025 4.025 18 C -0.254 4.254 19 C 0.010 3.990 20 N -0.187 5.187 21 C 0.193 3.807 22 C -0.553 4.553 23 H 0.102 0.898 24 C -0.194 4.194 25 N -0.384 5.384 26 Si 0.896 3.104 27 H -0.194 1.194 28 H -0.194 1.194 29 H -0.175 1.175 30 H 0.239 0.761 31 H 0.245 0.755 32 H 0.129 0.871 33 H 0.081 0.919 34 H 0.112 0.888 35 H 0.070 0.930 36 H 0.135 0.865 37 H 0.151 0.849 38 H 0.157 0.843 39 H 0.152 0.848 40 H 0.110 0.890 41 H 0.126 0.874 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 8.119 -12.243 -2.356 14.878 hybrid contribution -1.401 -1.587 -0.188 2.125 sum 6.718 -13.830 -2.543 15.584 Atomic orbital electron populations 1.81071 1.12661 1.09844 1.15981 1.25377 0.92255 0.91582 0.90684 1.16281 0.84402 0.94909 1.34749 1.17765 0.87668 0.84800 0.83183 1.42039 1.09091 1.09209 1.76151 1.67191 1.04317 1.28084 1.33409 1.18989 0.88852 0.86321 0.85149 1.59767 1.04214 1.39360 1.16780 1.22260 1.00299 0.98497 0.84892 1.21002 1.00622 0.93263 0.99688 1.19339 1.00479 0.94180 0.93794 1.21125 1.01207 0.92556 0.99940 1.21211 1.00911 0.97496 0.95334 1.21259 0.99763 0.98702 0.94379 1.21125 1.00555 0.91512 1.00303 1.19933 0.98374 0.95825 0.93040 1.21083 1.01556 0.83475 0.96398 1.16378 0.90943 0.89240 1.28879 1.25020 0.91017 0.91998 0.90935 1.80891 1.12320 1.11467 1.14021 1.17176 0.88994 0.90624 0.83921 1.20632 1.14348 1.03820 1.16489 0.89794 1.27846 0.90236 1.10213 0.91073 1.70445 1.25313 1.16913 1.25770 0.83495 0.78859 0.69789 0.78270 1.19368 1.19376 1.17454 0.76106 0.75532 0.87089 0.91899 0.88797 0.93047 0.86531 0.84876 0.84254 0.84796 0.89035 0.87393 0.89802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -22.33 18.54 19.00 0.35 -21.98 16 2 C 0.31 13.06 13.19 88.33 1.16 14.22 16 3 C -0.29 -11.81 5.84 -20.46 -0.12 -11.93 16 4 C 0.51 17.49 7.74 133.74 1.04 18.52 16 5 N -0.82 -21.62 8.96 -55.12 -0.49 -22.11 16 6 N -0.60 -20.09 6.99 -189.76 -1.33 -21.42 16 7 C 0.44 16.03 4.31 133.72 0.58 16.61 16 8 N -0.48 -15.21 4.52 -706.05 -3.19 -18.40 16 9 C 0.07 1.93 5.73 86.22 0.49 2.43 16 10 C -0.11 -3.03 5.24 29.82 0.16 -2.87 16 11 C -0.08 -2.01 5.03 -19.85 -0.10 -2.11 16 12 C -0.13 -3.04 9.66 22.33 0.22 -2.83 16 13 C -0.13 -2.58 10.05 22.23 0.22 -2.35 16 14 C -0.12 -2.22 10.05 22.22 0.22 -2.00 16 15 C -0.12 -2.32 9.65 22.34 0.22 -2.10 16 16 C -0.07 -1.68 4.34 -19.87 -0.09 -1.77 16 17 C 0.10 2.51 5.20 85.58 0.44 2.95 16 18 C -0.24 -10.39 5.22 -20.46 -0.11 -10.50 16 19 C 0.32 14.89 9.92 88.35 0.88 15.76 16 20 N -0.51 -24.54 18.53 18.99 0.35 -24.19 16 21 C 0.20 9.28 4.87 -20.72 -0.10 9.18 16 22 C -0.52 -25.44 7.88 23.37 0.18 -25.26 16 23 H 0.08 4.15 7.87 -2.91 -0.02 4.13 16 24 C 0.03 1.48 3.82 85.45 0.33 1.80 16 25 N -0.76 -37.90 12.12 21.92 0.27 -37.64 16 26 Si 1.08 44.08 30.02 68.60 2.06 46.14 16 27 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 28 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 29 H -0.25 -9.32 7.11 99.48 0.71 -8.61 16 30 H 0.41 10.33 7.62 -92.70 -0.71 9.63 16 31 H 0.41 8.91 8.95 -92.71 -0.83 8.08 16 32 H 0.11 2.64 8.05 -2.39 -0.02 2.62 16 33 H 0.06 2.19 6.73 -2.39 -0.02 2.17 16 34 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.05 1.77 7.38 -2.39 -0.02 1.75 16 36 H 0.12 2.54 8.06 -2.91 -0.02 2.52 16 37 H 0.13 2.02 8.06 -2.91 -0.02 2.00 16 38 H 0.14 1.78 8.06 -2.91 -0.02 1.76 16 39 H 0.13 2.13 8.06 -2.91 -0.02 2.10 16 40 H 0.09 2.30 7.84 -2.39 -0.02 2.28 16 41 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 42 H 0.29 14.52 7.62 -92.71 -0.71 13.81 16 Total: -1.00 -57.07 359.29 3.29 -53.78 By element: Atomic # 1 Polarization: 28.39 SS G_CDS: -0.35 Total: 28.05 kcal Atomic # 6 Polarization: 12.15 SS G_CDS: 5.62 Total: 17.77 kcal Atomic # 7 Polarization: -141.69 SS G_CDS: -4.04 Total: -145.73 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.06 Total: 46.14 kcal Total: -57.07 3.29 -53.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000025426721.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.320 kcal (2) G-P(sol) polarization free energy of solvation -57.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds