Wall clock time and date at job start Tue Mar 31 2020 05:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47558 * 318.01649 * 3 2 1 5 5 N 1.46894 * 109.47273 * 183.28892 * 4 3 2 6 6 C 1.46905 * 110.99907 * 302.86349 * 5 4 3 7 7 C 1.50696 * 109.47325 * 297.12932 * 6 5 4 8 8 H 1.08005 * 119.99900 * 354.84184 * 7 6 5 9 9 C 1.37872 * 120.00329 * 174.84758 * 7 6 5 10 10 N 1.31517 * 120.00054 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 120.00185 * 179.97438 * 9 7 6 12 12 H 1.48509 * 109.46922 * 60.00014 * 11 9 7 13 13 H 1.48501 * 109.47122 * 179.97438 * 11 9 7 14 14 H 1.48502 * 109.47228 * 300.00102 * 11 9 7 15 15 C 1.46897 * 111.00127 * 66.81633 * 5 4 3 16 16 N 1.46501 * 109.47335 * 66.04910 * 15 5 4 17 17 N 1.40025 * 126.26199 * 89.96888 * 16 15 5 18 18 N 1.23648 * 109.31597 * 180.02562 * 17 16 15 19 19 N 1.40020 * 109.31971 * 0.02562 * 18 17 16 20 20 C 1.40075 * 126.25983 * 180.02562 * 19 18 17 21 21 C 1.38870 * 120.07034 * 325.01972 * 20 19 18 22 22 C 1.38105 * 119.93225 * 179.97438 * 21 20 19 23 23 C 1.38282 * 120.07141 * 359.97438 * 22 21 20 24 24 C 1.38293 * 120.13712 * 0.04595 * 23 22 21 25 25 C 1.38111 * 120.07054 * 359.95661 * 24 23 22 26 26 C 1.35053 * 126.25705 * 270.28810 * 16 15 5 27 27 S 1.71199 * 126.80154 * 359.97438 * 26 16 15 28 28 H 1.08996 * 109.47254 * 198.01276 * 3 2 1 29 29 H 1.09002 * 109.47113 * 78.01927 * 3 2 1 30 30 H 1.09004 * 109.46976 * 63.28671 * 4 3 2 31 31 H 1.09003 * 109.47001 * 303.28978 * 4 3 2 32 32 H 1.09004 * 109.47246 * 57.13097 * 6 5 4 33 33 H 1.09002 * 109.47081 * 177.12836 * 6 5 4 34 34 H 0.96998 * 119.99823 * 180.02562 * 10 9 7 35 35 H 1.09000 * 109.47336 * 306.04667 * 15 5 4 36 36 H 1.09008 * 109.47136 * 186.04855 * 15 5 4 37 37 H 1.08002 * 120.03405 * 359.70659 * 21 20 19 38 38 H 1.07998 * 119.96817 * 179.97438 * 22 21 20 39 39 H 1.08003 * 119.93567 * 180.02562 * 23 22 21 40 40 H 1.08003 * 119.96255 * 179.97438 * 24 23 22 41 41 H 1.08000 * 120.03432 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1186 -1.0714 0.9649 5 7 4.5853 -1.0181 1.0244 6 6 5.1730 -1.1892 -0.3111 7 6 4.8187 -2.5533 -0.8447 8 1 4.2888 -3.2568 -0.2196 9 6 5.1711 -2.9033 -2.1308 10 7 5.8161 -2.0466 -2.8922 11 14 4.7327 -4.5945 -2.7920 12 1 3.2583 -4.7701 -2.7637 13 1 5.2189 -4.7210 -4.1895 14 1 5.3716 -5.6367 -1.9488 15 6 5.0420 0.2331 1.6440 16 7 4.6350 0.2582 3.0511 17 7 5.3757 -0.2260 4.1363 18 7 4.7371 -0.0471 5.1798 19 7 3.5176 0.5706 4.8765 20 6 2.5230 0.9350 5.7930 21 6 2.2848 0.1469 6.9113 22 6 1.3038 0.5091 7.8134 23 6 0.5594 1.6556 7.6043 24 6 0.7939 2.4423 6.4914 25 6 1.7735 2.0855 5.5856 26 6 3.4742 0.7472 3.5383 27 16 2.2010 1.4540 2.6381 28 1 2.9709 0.9781 0.3178 29 1 2.9714 -0.2125 -1.0053 30 1 2.8046 -2.0547 0.6147 31 1 2.7078 -0.8913 1.9584 32 1 4.7813 -0.4240 -0.9812 33 1 6.2569 -1.0948 -0.2459 34 1 6.0636 -2.2927 -3.7972 35 1 4.5974 1.0805 1.1221 36 1 6.1283 0.2955 1.5788 37 1 2.8631 -0.7508 7.0732 38 1 1.1177 -0.1036 8.6830 39 1 -0.2070 1.9370 8.3113 40 1 0.2105 3.3369 6.3306 41 1 1.9564 2.7005 4.7169 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000025664089.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:05 Heat of formation + Delta-G solvation = 213.913070 kcal Electronic energy + Delta-G solvation = -27213.241879 eV Core-core repulsion = 23452.080640 eV Total energy + Delta-G solvation = -3761.161240 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 344.111 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.45478 -39.66379 -38.27286 -35.87170 -35.45002 -34.53260 -32.66375 -31.41122 -30.74484 -30.12420 -27.93444 -26.07303 -25.11122 -24.43309 -23.65040 -22.67423 -22.17313 -20.44731 -19.04354 -17.72609 -17.53311 -17.35118 -16.86112 -16.57164 -16.12080 -15.52685 -15.20018 -14.66943 -14.59355 -14.45691 -14.05572 -13.85539 -13.61732 -13.54081 -13.38390 -13.23285 -12.45899 -12.30228 -12.15988 -12.02766 -12.01651 -11.83556 -11.71566 -11.60283 -11.37345 -11.30615 -11.14418 -10.88023 -10.74760 -10.21453 -10.12236 -9.53134 -9.37062 -9.15822 -8.62122 -7.98593 -7.83930 -7.51502 -6.21491 -4.24216 0.19040 0.50359 0.75269 1.00210 1.16688 1.87110 2.14745 3.24365 3.26122 3.30901 3.33910 3.39608 3.48760 3.67808 4.13479 4.22059 4.42540 4.52078 4.59347 4.72696 4.81449 4.96536 5.01778 5.15478 5.16210 5.19140 5.25209 5.51363 5.59085 5.64060 5.71027 5.84884 5.98326 6.03136 6.05843 6.14164 6.26045 6.54397 6.57608 6.83577 6.96731 7.17047 7.43807 7.58446 7.84330 8.15735 8.23522 8.81674 9.41758 10.88618 Molecular weight = 344.11amu Principal moments of inertia in cm(-1) A = 0.016468 B = 0.003177 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.878316 B = 8811.325665 C = 9515.447591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C 0.240 3.760 3 C -0.064 4.064 4 C 0.069 3.931 5 N -0.539 5.539 6 C 0.193 3.807 7 C -0.515 4.515 8 H 0.065 0.935 9 C 0.063 3.937 10 N -0.893 5.893 11 Si 0.897 3.103 12 H -0.276 1.276 13 H -0.287 1.287 14 H -0.276 1.276 15 C 0.287 3.713 16 N -0.383 5.383 17 N 0.044 4.956 18 N 0.009 4.991 19 N -0.360 5.360 20 C 0.136 3.864 21 C -0.101 4.101 22 C -0.110 4.110 23 C -0.107 4.107 24 C -0.104 4.104 25 C -0.087 4.087 26 C 0.448 3.552 27 S -0.497 6.497 28 H 0.112 0.888 29 H 0.117 0.883 30 H 0.094 0.906 31 H 0.060 0.940 32 H 0.017 0.983 33 H 0.037 0.963 34 H 0.265 0.735 35 H 0.099 0.901 36 H 0.124 0.876 37 H 0.133 0.867 38 H 0.134 0.866 39 H 0.130 0.870 40 H 0.136 0.864 41 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.018 9.070 19.207 21.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.145 5.145 2 C -0.077 4.077 3 C -0.106 4.106 4 C -0.061 4.061 5 N -0.264 5.264 6 C 0.069 3.931 7 C -0.554 4.554 8 H 0.083 0.917 9 C -0.140 4.140 10 N -0.532 5.532 11 Si 0.725 3.275 12 H -0.201 1.201 13 H -0.212 1.212 14 H -0.201 1.201 15 C 0.078 3.922 16 N -0.187 5.187 17 N 0.050 4.950 18 N 0.016 4.984 19 N -0.156 5.156 20 C 0.045 3.955 21 C -0.122 4.122 22 C -0.128 4.128 23 C -0.126 4.126 24 C -0.123 4.123 25 C -0.109 4.109 26 C 0.090 3.910 27 S -0.368 6.368 28 H 0.129 0.871 29 H 0.135 0.865 30 H 0.112 0.888 31 H 0.079 0.921 32 H 0.035 0.965 33 H 0.055 0.945 34 H 0.075 0.925 35 H 0.117 0.883 36 H 0.142 0.858 37 H 0.151 0.849 38 H 0.152 0.848 39 H 0.148 0.852 40 H 0.154 0.846 41 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -4.145 8.557 19.290 21.506 hybrid contribution 0.289 -0.581 -0.859 1.076 sum -3.856 7.977 18.431 20.450 Atomic orbital electron populations 1.81063 1.13181 1.09826 1.10448 1.28871 0.95001 0.92176 0.91666 1.20161 0.82520 1.03455 1.04476 1.22161 0.87096 0.99172 0.97646 1.62419 1.07469 1.29261 1.27213 1.19902 0.95195 0.98170 0.79810 1.20958 1.37845 0.98766 0.97809 0.91694 1.24910 0.94928 0.97474 0.96653 1.69907 1.39145 1.35140 1.08972 0.86562 0.78969 0.84095 0.77899 1.20106 1.21236 1.20106 1.22776 1.01922 0.96316 0.71219 1.51168 1.11647 1.46831 1.09038 1.79833 1.16687 1.08900 0.89609 1.79937 0.91274 1.08742 1.18450 1.47472 1.14275 1.48982 1.04864 1.17312 0.90624 0.96827 0.90703 1.20981 0.98625 0.99060 0.93519 1.21001 0.95262 0.97381 0.99195 1.21376 0.99046 0.94649 0.97507 1.21085 0.97321 1.00316 0.93543 1.21540 0.95000 0.94149 1.00201 1.24798 0.91231 0.89404 0.85555 1.93565 1.26929 1.55112 1.61230 0.87057 0.86520 0.88799 0.92127 0.96531 0.94497 0.92530 0.88325 0.85809 0.84864 0.84804 0.85184 0.84601 0.82832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -9.53 18.54 42.15 0.78 -8.74 16 2 C 0.24 4.46 14.30 -20.76 -0.30 4.17 16 3 C -0.06 -1.07 4.02 -29.52 -0.12 -1.19 16 4 C 0.07 1.21 4.51 -3.83 -0.02 1.19 16 5 N -0.54 -9.45 4.87 -239.98 -1.17 -10.62 16 6 C 0.19 4.03 4.35 -4.98 -0.02 4.01 16 7 C -0.52 -12.57 8.42 -34.44 -0.29 -12.86 16 8 H 0.06 1.61 7.08 -52.48 -0.37 1.24 16 9 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 10 N -0.89 -23.69 13.29 55.43 0.74 -22.95 16 11 Si 0.90 20.25 29.54 -169.99 -5.02 15.23 16 12 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 13 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 14 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 15 C 0.29 4.04 5.86 -63.32 -0.37 3.67 16 16 N -0.38 -5.40 3.59 -64.90 -0.23 -5.63 16 17 N 0.04 0.60 13.55 60.35 0.82 1.42 16 18 N 0.01 0.11 13.31 60.35 0.80 0.92 16 19 N -0.36 -4.74 3.73 -11.23 -0.04 -4.79 16 20 C 0.14 1.58 6.35 -83.62 -0.53 1.05 16 21 C -0.10 -0.97 9.77 -39.40 -0.38 -1.36 16 22 C -0.11 -0.82 10.04 -39.61 -0.40 -1.21 16 23 C -0.11 -0.75 10.04 -39.54 -0.40 -1.15 16 24 C -0.10 -0.86 10.04 -39.61 -0.40 -1.25 16 25 C -0.09 -0.93 8.77 -39.39 -0.35 -1.28 16 26 C 0.45 6.46 6.56 -86.42 -0.57 5.89 16 27 S -0.50 -7.80 21.78 -107.50 -2.34 -10.14 16 28 H 0.11 1.71 4.68 -51.93 -0.24 1.46 16 29 H 0.12 2.06 6.49 -51.93 -0.34 1.73 16 30 H 0.09 1.83 6.84 -51.93 -0.36 1.47 16 31 H 0.06 1.07 5.02 -51.93 -0.26 0.81 16 32 H 0.02 0.36 6.16 -51.93 -0.32 0.04 16 33 H 0.04 0.81 8.00 -51.93 -0.42 0.40 16 34 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 35 H 0.10 1.29 5.80 -51.93 -0.30 0.99 16 36 H 0.12 1.54 7.98 -51.92 -0.41 1.13 16 37 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 38 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 39 H 0.13 0.57 8.06 -52.48 -0.42 0.15 16 40 H 0.14 0.83 8.06 -52.48 -0.42 0.41 16 41 H 0.15 1.80 6.09 -52.49 -0.32 1.48 16 LS Contribution 356.66 15.07 5.37 5.37 Total: -1.00 -29.00 356.66 -8.69 -37.69 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -4.16 Total: 1.04 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: -4.23 Total: 1.19 kcal Atomic # 7 Polarization: -52.09 SS G_CDS: 1.70 Total: -50.39 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Atomic # 16 Polarization: -7.80 SS G_CDS: -2.34 Total: -10.14 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.00 -8.69 -37.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000025664089.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 251.604 kcal (2) G-P(sol) polarization free energy of solvation -29.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 222.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 213.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds