Wall clock time and date at job start Tue Mar 31 2020 05:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34010 * 122.24146 * 2 1 4 4 C 1.46615 * 124.63731 * 0.02562 * 3 2 1 5 5 O 1.21642 * 119.99692 * 0.02562 * 4 3 2 6 6 O 1.34858 * 120.00115 * 179.97438 * 4 3 2 7 7 C 1.34830 * 116.99876 * 180.02562 * 6 4 3 8 8 H 1.08000 * 120.00314 * 0.02562 * 7 6 4 9 9 C 1.38812 * 120.00099 * 180.02562 * 7 6 4 10 10 N 1.31417 * 119.99625 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 120.00260 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.46967 * 0.02562 * 11 9 7 13 13 H 1.48498 * 109.47316 * 119.99967 * 11 9 7 14 14 H 1.48503 * 109.47254 * 240.00429 * 11 9 7 15 15 S 1.75527 * 110.73169 * 179.97438 * 3 2 1 16 16 C 1.75842 * 91.63398 * 359.97438 * 15 3 2 17 17 N 1.33363 * 131.25402 * 180.28639 * 16 15 3 18 18 C 1.32437 * 120.80132 * 180.19452 * 17 16 15 19 19 C 1.47375 * 119.08967 * 179.76121 * 18 17 16 20 20 C 1.36215 * 125.95860 * 359.70362 * 19 18 17 21 21 C 1.40677 * 106.73024 * 179.75061 * 20 19 18 22 22 C 1.34914 * 107.06498 * 0.40612 * 21 20 19 23 23 O 1.34150 * 108.71125 * 359.59184 * 22 21 20 24 24 N 1.33312 * 121.81710 * 359.48364 * 18 17 16 25 25 C 1.31325 * 121.32659 * 0.25560 * 24 18 17 26 26 C 1.50697 * 120.35947 * 180.02562 * 25 24 18 27 27 C 1.39940 * 122.23996 * 179.97438 * 2 1 3 28 28 H 1.08997 * 109.47357 * 262.91776 * 1 2 3 29 29 H 1.09003 * 109.47151 * 22.91681 * 1 2 3 30 30 H 1.09003 * 109.47099 * 142.91227 * 1 2 3 31 31 H 0.97005 * 119.99577 * 180.02562 * 10 9 7 32 32 H 1.08002 * 126.63075 * 359.97438 * 20 19 18 33 33 H 1.07998 * 126.46549 * 180.25980 * 21 20 19 34 34 H 1.08006 * 125.64348 * 179.85400 * 22 21 20 35 35 H 1.08998 * 109.47289 * 107.20115 * 26 25 24 36 36 H 1.09000 * 109.47040 * 227.20308 * 26 25 24 37 37 H 1.09004 * 109.46821 * 347.20247 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2219 1.1335 0.0000 4 6 1.6462 2.4818 0.0005 5 8 0.4385 2.6275 0.0015 6 8 2.4555 3.5606 0.0010 7 6 1.8618 4.7712 0.0020 8 1 0.7843 4.8442 0.0029 9 6 2.6355 5.9236 0.0020 10 7 3.9467 5.8347 0.0005 11 14 1.8131 7.6008 0.0042 12 1 0.3381 7.4288 0.0063 13 1 2.2250 8.3526 1.2167 14 1 2.2223 8.3544 -1.2083 15 16 3.9419 0.7832 0.0007 16 6 3.6403 -0.9491 0.0018 17 7 4.4772 -1.9875 0.0078 18 6 4.0172 -3.2293 0.0034 19 6 4.9759 -4.3486 0.0049 20 6 6.3336 -4.2388 0.0048 21 6 6.8459 -5.5490 0.0124 22 6 5.7889 -6.3874 0.0076 23 8 4.6621 -5.6593 0.0066 24 7 2.7108 -3.4949 0.0032 25 6 1.8182 -2.5316 0.0023 26 6 0.3467 -2.8566 0.0027 27 6 2.2535 -1.1836 0.0005 28 1 -0.3634 -0.1267 1.0198 29 1 -0.3633 0.9466 -0.4002 30 1 -0.3633 -0.8198 -0.6197 31 1 4.4874 6.6401 0.0009 32 1 6.9060 -3.3230 0.0032 33 1 7.8885 -5.8305 0.0183 34 1 5.8412 -7.4661 0.0091 35 1 -0.0736 -2.6373 0.9842 36 1 -0.1587 -2.2540 -0.7519 37 1 0.2081 -3.9138 -0.2240 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000025775652.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:35 Heat of formation + Delta-G solvation = 15.576375 kcal Electronic energy + Delta-G solvation = -26014.091024 eV Core-core repulsion = 22043.910664 eV Total energy + Delta-G solvation = -3970.180361 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 344.066 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.75445 -41.17346 -39.27460 -37.07951 -35.20105 -34.66395 -33.20470 -32.41885 -31.77575 -30.07980 -28.93091 -27.77857 -25.52480 -24.83289 -23.69988 -22.06707 -21.63318 -20.86324 -19.33359 -18.55976 -18.19493 -17.84988 -17.07073 -16.40052 -16.36861 -15.59560 -15.50307 -15.05628 -14.73143 -14.56194 -14.37259 -13.88337 -13.63931 -13.19231 -13.08761 -13.05015 -13.03894 -12.73974 -12.66196 -12.63289 -11.85988 -11.69613 -11.50169 -11.38054 -11.13289 -10.80850 -10.67135 -10.62879 -10.52224 -10.16797 -10.06397 -9.31702 -9.30888 -9.09086 -8.80450 -8.45540 -7.81867 -6.66245 -4.26261 -0.14206 0.85826 1.16734 1.32047 1.97749 1.99438 2.44896 2.49120 3.02740 3.07306 3.15241 3.59816 3.60121 3.69684 3.72439 4.10696 4.20869 4.44902 4.64306 4.77955 4.83450 4.90972 4.94274 5.13411 5.17201 5.40476 5.52245 5.53169 5.64766 5.69142 5.77506 5.85215 5.95641 6.10769 6.19612 6.21302 6.49983 6.68455 6.81323 6.87062 7.18582 7.69831 7.85720 8.45244 8.80565 9.54829 10.50053 Molecular weight = 344.07amu Principal moments of inertia in cm(-1) A = 0.020807 B = 0.002670 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.378385 B =10483.158484 C =11808.085181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.026 4.026 3 C -0.175 4.175 4 C 0.453 3.547 5 O -0.533 6.533 6 O -0.198 6.198 7 C -0.368 4.368 8 H 0.104 0.896 9 C 0.041 3.959 10 N -0.847 5.847 11 Si 0.949 3.051 12 H -0.262 1.262 13 H -0.274 1.274 14 H -0.273 1.273 15 S 0.262 5.738 16 C 0.070 3.930 17 N -0.470 5.470 18 C 0.399 3.601 19 C 0.034 3.966 20 C -0.139 4.139 21 C -0.221 4.221 22 C -0.019 4.019 23 O -0.153 6.153 24 N -0.514 5.514 25 C 0.247 3.753 26 C -0.118 4.118 27 C -0.175 4.175 28 H 0.075 0.925 29 H 0.112 0.888 30 H 0.073 0.927 31 H 0.275 0.725 32 H 0.161 0.839 33 H 0.155 0.845 34 H 0.209 0.791 35 H 0.093 0.907 36 H 0.100 0.900 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.078 -19.434 -0.080 19.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.040 4.040 3 C -0.293 4.293 4 C 0.301 3.699 5 O -0.433 6.433 6 O -0.104 6.104 7 C -0.444 4.444 8 H 0.122 0.878 9 C -0.165 4.165 10 N -0.482 5.482 11 Si 0.772 3.228 12 H -0.186 1.186 13 H -0.199 1.199 14 H -0.199 1.199 15 S 0.527 5.473 16 C -0.181 4.181 17 N -0.188 5.188 18 C 0.130 3.870 19 C -0.018 4.018 20 C -0.161 4.161 21 C -0.240 4.240 22 C -0.090 4.090 23 O -0.046 6.046 24 N -0.230 5.230 25 C 0.089 3.911 26 C -0.175 4.175 27 C -0.189 4.189 28 H 0.093 0.907 29 H 0.130 0.870 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.179 0.821 33 H 0.173 0.827 34 H 0.226 0.774 35 H 0.111 0.889 36 H 0.118 0.882 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.714 -19.016 -0.070 19.208 hybrid contribution -1.566 0.556 0.055 1.663 sum 1.148 -18.460 -0.016 18.496 Atomic orbital electron populations 1.21366 0.88260 1.06090 1.02858 1.18506 0.98202 0.88495 0.98775 1.23053 0.97304 0.96109 1.12838 1.19149 0.85341 0.83952 0.81504 1.90589 1.14833 1.85541 1.52346 1.83911 1.38469 1.14056 1.73994 1.21477 0.93648 0.78436 1.50854 0.87836 1.25489 0.95507 0.99654 0.95856 1.69989 1.04121 1.30468 1.43589 0.85519 0.79495 0.79364 0.78390 1.18632 1.19888 1.19879 1.84998 1.01908 0.88454 1.71913 1.24395 0.91947 1.00701 1.01058 1.67654 1.37983 0.97217 1.15934 1.19317 0.86583 0.87263 0.93792 1.18948 0.91287 0.80512 1.11088 1.21970 0.92334 0.99220 1.02590 1.21843 1.00549 0.92434 1.09219 1.24337 0.82754 0.97776 1.04087 1.84122 1.34108 1.15972 1.70433 1.68130 1.01704 1.36210 1.16966 1.21761 0.96737 0.85984 0.86636 1.21228 0.87819 1.04090 1.04383 1.19413 0.94098 0.95768 1.09650 0.90658 0.86984 0.90915 0.91514 0.82132 0.82724 0.77435 0.88855 0.88226 0.89650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.88 8.59 36.01 0.31 -1.57 16 2 C -0.03 -0.46 5.85 -105.47 -0.62 -1.07 16 3 C -0.18 -3.53 6.31 -37.69 -0.24 -3.76 16 4 C 0.45 10.96 7.85 34.11 0.27 11.23 16 5 O -0.53 -13.29 13.04 -19.38 -0.25 -13.54 16 6 O -0.20 -5.42 9.55 -21.91 -0.21 -5.63 16 7 C -0.37 -10.26 9.65 30.94 0.30 -9.96 16 8 H 0.10 2.86 6.86 -52.49 -0.36 2.50 16 9 C 0.04 1.10 5.50 -17.52 -0.10 1.00 16 10 N -0.85 -23.46 13.67 55.49 0.76 -22.70 16 11 Si 0.95 20.01 29.55 -169.99 -5.02 14.99 16 12 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 13 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 14 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 15 S 0.26 4.83 23.04 -107.50 -2.48 2.35 16 16 C 0.07 1.24 7.71 -15.98 -0.12 1.11 16 17 N -0.47 -8.03 10.10 -9.86 -0.10 -8.13 16 18 C 0.40 6.46 7.58 -156.88 -1.19 5.27 16 19 C 0.03 0.47 7.15 -36.59 -0.26 0.21 16 20 C -0.14 -1.67 10.55 -39.39 -0.42 -2.08 16 21 C -0.22 -2.01 10.88 -39.84 -0.43 -2.45 16 22 C -0.02 -0.17 12.08 29.55 0.36 0.19 16 23 O -0.15 -1.93 10.66 4.81 0.05 -1.88 16 24 N -0.51 -8.06 10.23 -7.01 -0.07 -8.13 16 25 C 0.25 3.57 6.90 -81.51 -0.56 3.00 16 26 C -0.12 -1.18 8.76 36.00 0.32 -0.87 16 27 C -0.17 -2.87 5.85 -107.05 -0.63 -3.50 16 28 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.11 1.96 5.30 -51.93 -0.28 1.69 16 30 H 0.07 0.82 4.74 -51.93 -0.25 0.57 16 31 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 32 H 0.16 1.84 8.06 -52.49 -0.42 1.41 16 33 H 0.16 0.97 8.06 -52.49 -0.42 0.55 16 34 H 0.21 0.84 8.06 -52.48 -0.42 0.42 16 35 H 0.09 0.81 8.13 -51.93 -0.42 0.38 16 36 H 0.10 0.88 5.32 -51.93 -0.28 0.60 16 37 H 0.08 0.76 8.13 -51.93 -0.42 0.33 16 LS Contribution 341.45 15.07 5.15 5.15 Total: -1.00 -32.55 341.45 -8.02 -40.57 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: -2.83 Total: 0.20 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: -3.01 Total: -3.24 kcal Atomic # 7 Polarization: -39.55 SS G_CDS: 0.59 Total: -38.96 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: -0.41 Total: -21.05 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Atomic # 16 Polarization: 4.83 SS G_CDS: -2.48 Total: 2.35 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.55 -8.02 -40.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000025775652.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.147 kcal (2) G-P(sol) polarization free energy of solvation -32.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds