Wall clock time and date at job start Tue Mar 31 2020 06:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35990 * 116.99764 * 2 1 4 4 C 1.38249 * 120.16583 * 359.97438 * 3 2 1 5 5 C 1.38988 * 120.61554 * 180.27421 * 4 3 2 6 6 C 1.37738 * 119.63266 * 358.92051 * 5 4 3 7 7 C 1.38839 * 119.96865 * 1.30707 * 6 5 4 8 8 C 1.38299 * 120.53836 * 359.23704 * 7 6 5 9 9 O 1.36000 * 120.21750 * 179.97438 * 8 7 6 10 10 C 1.42901 * 116.99891 * 0.02562 * 9 8 7 11 11 C 1.50836 * 122.31613 * 181.70519 * 6 5 4 12 12 H 1.09003 * 109.43282 * 228.15601 * 11 6 5 13 13 C 1.50694 * 109.43818 * 108.28861 * 11 6 5 14 14 C 1.33392 * 125.20233 * 100.00241 * 13 11 6 15 15 C 1.38430 * 114.92034 * 179.97438 * 14 13 11 16 16 C 1.33391 * 114.92117 * 359.97438 * 15 14 13 17 17 S 1.75883 * 125.20222 * 279.69652 * 13 11 6 18 18 N 1.46896 * 109.61078 * 347.56948 * 11 6 5 19 19 C 1.36946 * 121.58897 * 224.71127 * 18 11 6 20 20 H 1.08000 * 120.00058 * 157.83173 * 19 18 11 21 21 C 1.38807 * 120.00192 * 337.82774 * 19 18 11 22 22 N 1.31632 * 119.99949 * 341.79045 * 21 19 18 23 23 Si 1.86797 * 120.00226 * 161.79340 * 21 19 18 24 24 H 1.48493 * 109.47417 * 89.99767 * 23 21 19 25 25 H 1.48497 * 109.47285 * 210.00038 * 23 21 19 26 26 H 1.48506 * 109.46861 * 329.99750 * 23 21 19 27 27 C 1.47213 * 117.08626 * 45.04656 * 18 11 6 28 28 C 1.50626 * 117.53622 * 178.51587 * 5 4 3 29 29 H 1.08997 * 109.47294 * 299.99718 * 1 2 3 30 30 H 1.08996 * 109.46892 * 60.00277 * 1 2 3 31 31 H 1.09008 * 109.46885 * 179.97438 * 1 2 3 32 32 H 1.08003 * 119.69146 * 359.97438 * 4 3 2 33 33 H 1.08005 * 119.73209 * 179.21715 * 7 6 5 34 34 H 1.09009 * 109.46794 * 180.02562 * 10 9 8 35 35 H 1.08996 * 109.47159 * 299.99950 * 10 9 8 36 36 H 1.08994 * 109.47033 * 60.00353 * 10 9 8 37 37 H 1.07992 * 122.54285 * 359.97438 * 14 13 11 38 38 H 1.08000 * 122.54110 * 180.02562 * 15 14 13 39 39 H 1.07997 * 125.20749 * 180.02562 * 16 15 14 40 40 H 0.97000 * 119.99402 * 180.02562 * 22 21 19 41 41 H 1.08995 * 109.77368 * 175.89521 * 27 18 11 42 42 H 1.09002 * 109.76763 * 55.11173 * 27 18 11 43 43 H 1.08999 * 109.19595 * 280.41804 * 28 5 4 44 44 H 1.09004 * 109.19756 * 39.69890 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2968 2.3733 -0.0005 5 6 1.9180 3.6166 -0.0063 6 6 3.2932 3.6909 0.0111 7 6 4.0507 2.5274 0.0067 8 6 3.4359 1.2886 0.0009 9 8 4.1842 0.1530 -0.0039 10 6 5.6044 0.3120 -0.0020 11 6 4.0293 5.0070 0.0440 12 1 4.8137 5.0029 -0.7129 13 6 4.6476 5.2020 1.4044 14 6 5.9270 4.9767 1.7070 15 6 6.2674 5.2271 3.0252 16 6 5.2645 5.6561 3.7930 17 16 3.7942 5.7686 2.8341 18 7 3.0940 6.1024 -0.2445 19 6 3.4183 7.1135 -1.1093 20 1 2.6376 7.6914 -1.5816 21 6 4.7504 7.3959 -1.3787 22 7 5.6920 6.9641 -0.5666 23 14 5.2068 8.3888 -2.8937 24 1 5.2278 9.8334 -2.5510 25 1 6.5502 7.9738 -3.3713 26 1 4.2051 8.1482 -3.9634 27 6 1.7926 6.0712 0.4429 28 6 1.0347 4.8362 -0.0411 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 0.2184 2.3140 -0.0014 33 1 5.1289 2.5901 0.0076 34 1 6.0798 -0.6690 -0.0067 35 1 5.9090 0.8672 -0.8890 36 1 5.9075 0.8587 0.8909 37 1 6.6431 4.6256 0.9789 38 1 7.2693 5.0865 3.4033 39 1 5.3440 5.9009 4.8418 40 1 6.6228 7.1618 -0.7548 41 1 1.2259 6.9701 0.2005 42 1 1.9462 6.0107 1.5204 43 1 0.6936 5.0026 -1.0628 44 1 0.1702 4.6712 0.6021 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000026474977.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:38 Heat of formation + Delta-G solvation = 19.898108 kcal Electronic energy + Delta-G solvation = -29015.114920 eV Core-core repulsion = 25219.069491 eV Total energy + Delta-G solvation = -3796.045429 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.119 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.38494 -38.27154 -38.15339 -36.55838 -35.11366 -32.63923 -31.61871 -30.00882 -28.77219 -28.11774 -27.10371 -26.87290 -25.04542 -23.33706 -22.24349 -21.98421 -21.42721 -19.55225 -18.18556 -17.94684 -17.26234 -16.64229 -16.15467 -15.83545 -15.46396 -15.06772 -15.04038 -14.69653 -14.21412 -14.15580 -13.95065 -13.80761 -13.35354 -12.90217 -12.67490 -12.30045 -12.16030 -12.02588 -11.92532 -11.70471 -11.54972 -11.38779 -11.32373 -11.09578 -11.01978 -10.96360 -10.79580 -10.43364 -10.34823 -10.18689 -9.98981 -9.86856 -9.47215 -8.71709 -8.16749 -7.56727 -7.47508 -7.28186 -6.96255 -5.86181 -3.28840 1.68081 1.85031 2.08731 2.65302 3.05680 3.33195 3.41279 3.42999 3.48615 3.55028 3.80570 4.10099 4.40507 5.03424 5.09739 5.21904 5.22488 5.29710 5.30849 5.35408 5.38121 5.47618 5.54714 5.64540 5.68816 5.76688 5.80120 5.93480 6.00653 6.08537 6.10608 6.23453 6.40328 6.47231 6.54337 6.60838 6.75853 6.85411 6.93090 7.09553 7.11336 7.27378 7.31044 7.44171 7.58059 7.69017 7.88048 8.21183 9.03358 9.66509 10.21462 11.19036 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.010061 B = 0.004884 C = 0.004424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2782.453929 B = 5731.792277 C = 6327.882133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.312 6.312 3 C 0.087 3.913 4 C -0.179 4.179 5 C -0.056 4.056 6 C -0.067 4.067 7 C -0.162 4.162 8 C 0.090 3.910 9 O -0.312 6.312 10 C 0.027 3.973 11 C 0.291 3.709 12 H 0.121 0.879 13 C -0.073 4.073 14 C -0.150 4.150 15 C -0.122 4.122 16 C -0.264 4.264 17 S 0.071 5.929 18 N -0.577 5.577 19 C -0.257 4.257 20 H 0.075 0.925 21 C 0.006 3.994 22 N -0.888 5.888 23 Si 0.901 3.099 24 H -0.288 1.288 25 H -0.290 1.290 26 H -0.280 1.280 27 C 0.135 3.865 28 C -0.094 4.094 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.094 0.906 32 H 0.127 0.873 33 H 0.132 0.868 34 H 0.094 0.906 35 H 0.054 0.946 36 H 0.055 0.945 37 H 0.124 0.876 38 H 0.119 0.881 39 H 0.143 0.857 40 H 0.255 0.745 41 H 0.066 0.934 42 H 0.034 0.966 43 H 0.074 0.926 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.081 -10.388 3.792 12.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.226 6.226 3 C 0.042 3.958 4 C -0.198 4.198 5 C -0.056 4.056 6 C -0.069 4.069 7 C -0.181 4.181 8 C 0.045 3.955 9 O -0.226 6.226 10 C -0.068 4.068 11 C 0.181 3.819 12 H 0.139 0.861 13 C -0.193 4.193 14 C -0.178 4.178 15 C -0.154 4.154 16 C -0.399 4.399 17 S 0.333 5.667 18 N -0.296 5.296 19 C -0.386 4.386 20 H 0.092 0.908 21 C -0.193 4.193 22 N -0.531 5.531 23 Si 0.730 3.270 24 H -0.215 1.215 25 H -0.216 1.216 26 H -0.205 1.205 27 C 0.009 3.991 28 C -0.133 4.133 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.112 0.888 32 H 0.145 0.855 33 H 0.150 0.850 34 H 0.113 0.887 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.142 0.858 38 H 0.137 0.863 39 H 0.161 0.839 40 H 0.066 0.934 41 H 0.085 0.915 42 H 0.051 0.949 43 H 0.092 0.908 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.346 -10.255 4.061 12.725 hybrid contribution 1.993 0.622 -0.933 2.287 sum -4.352 -9.633 3.127 11.023 Atomic orbital electron populations 1.22966 0.79350 1.03239 1.01079 1.86122 1.20396 1.26395 1.89698 1.18015 0.88990 0.84783 1.03994 1.21026 0.99299 0.91191 1.08311 1.19257 0.93165 0.93757 0.99445 1.20253 0.92979 0.95991 0.97671 1.21011 1.00410 0.90393 1.06281 1.18062 0.87991 0.85879 1.03559 1.86097 1.18279 1.28667 1.89600 1.23010 0.79084 1.03180 1.01561 1.17768 0.91483 0.81887 0.90765 0.86131 1.25240 0.96875 1.00379 0.96786 1.19664 0.95495 1.07165 0.95499 1.19980 0.98834 1.02495 0.94072 1.25454 0.98564 1.13028 1.02869 1.84016 1.12817 1.67757 1.02138 1.44191 1.12170 1.23821 1.49459 1.19117 0.91470 1.10643 1.17358 0.90758 1.24965 0.96441 0.99316 0.98574 1.70118 0.99891 1.48692 1.34403 0.86327 0.77627 0.79763 0.83244 1.21456 1.21563 1.20544 1.21123 0.88120 0.95303 0.94592 1.20937 0.96716 0.93998 1.01687 0.92989 0.93003 0.88788 0.85486 0.85000 0.88749 0.92762 0.92644 0.85779 0.86304 0.83945 0.93439 0.91511 0.94889 0.90802 0.91922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.81 101.05 0.99 1.30 16 2 O -0.31 -4.89 10.29 -33.94 -0.35 -5.24 16 3 C 0.09 1.49 6.69 -39.24 -0.26 1.22 16 4 C -0.18 -2.91 8.60 -39.30 -0.34 -3.24 16 5 C -0.06 -1.02 5.76 -104.56 -0.60 -1.62 16 6 C -0.07 -1.33 5.16 -104.52 -0.54 -1.87 16 7 C -0.16 -2.95 8.43 -39.34 -0.33 -3.28 16 8 C 0.09 1.60 6.69 -39.22 -0.26 1.34 16 9 O -0.31 -5.17 10.30 -33.97 -0.35 -5.52 16 10 C 0.03 0.33 9.82 101.05 0.99 1.33 16 11 C 0.29 6.47 1.86 -69.96 -0.13 6.34 16 12 H 0.12 3.03 6.21 -51.93 -0.32 2.70 16 13 C -0.07 -1.57 4.28 -36.01 -0.15 -1.72 16 14 C -0.15 -3.07 9.38 -41.20 -0.39 -3.46 16 15 C -0.12 -2.28 10.18 -41.21 -0.42 -2.70 16 16 C -0.26 -4.87 11.23 29.04 0.33 -4.54 16 17 S 0.07 1.41 20.17 -107.50 -2.17 -0.76 16 18 N -0.58 -13.39 2.60 -167.50 -0.43 -13.82 16 19 C -0.26 -6.56 9.70 -15.06 -0.15 -6.71 16 20 H 0.07 1.87 7.89 -52.49 -0.41 1.45 16 21 C 0.01 0.17 4.95 -17.43 -0.09 0.08 16 22 N -0.89 -23.41 9.63 55.49 0.53 -22.88 16 23 Si 0.90 20.75 29.59 -169.99 -5.03 15.72 16 24 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 26 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 27 C 0.14 2.67 6.22 -3.77 -0.02 2.65 16 28 C -0.09 -1.61 5.86 -28.04 -0.16 -1.77 16 29 H 0.05 0.50 7.66 -51.93 -0.40 0.11 16 30 H 0.05 0.51 7.66 -51.93 -0.40 0.11 16 31 H 0.09 0.77 8.14 -51.92 -0.42 0.34 16 32 H 0.13 1.69 6.26 -52.48 -0.33 1.36 16 33 H 0.13 2.25 6.28 -52.48 -0.33 1.92 16 34 H 0.09 0.90 8.14 -51.92 -0.42 0.48 16 35 H 0.05 0.65 7.66 -51.93 -0.40 0.25 16 36 H 0.05 0.67 7.67 -51.93 -0.40 0.27 16 37 H 0.12 2.49 8.06 -52.49 -0.42 2.07 16 38 H 0.12 1.91 8.06 -52.49 -0.42 1.48 16 39 H 0.14 2.23 8.06 -52.49 -0.42 1.81 16 40 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16 41 H 0.07 1.27 7.96 -51.93 -0.41 0.86 16 42 H 0.03 0.66 5.04 -43.67 -0.22 0.44 16 43 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 44 H 0.06 0.89 8.10 -51.93 -0.42 0.47 16 LS Contribution 363.85 15.07 5.48 5.48 Total: -1.00 -29.52 363.85 -9.56 -39.09 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -5.71 Total: 4.58 kcal Atomic # 6 Polarization: -15.12 SS G_CDS: -1.54 Total: -16.66 kcal Atomic # 7 Polarization: -36.80 SS G_CDS: 0.10 Total: -36.70 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: -0.70 Total: -10.76 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.03 Total: 15.72 kcal Atomic # 16 Polarization: 1.41 SS G_CDS: -2.17 Total: -0.76 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -29.52 -9.56 -39.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000026474977.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.987 kcal (2) G-P(sol) polarization free energy of solvation -29.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds