Wall clock time and date at job start Tue Mar 31 2020 06:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86798 * 120.00189 * 2 1 4 4 H 1.48503 * 109.47050 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47337 * 299.99842 * 3 2 1 6 6 H 1.48503 * 109.46956 * 60.00456 * 3 2 1 7 7 C 1.38812 * 119.99601 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00026 * 179.97438 * 7 2 1 9 9 S 1.76196 * 120.00190 * 0.02562 * 7 2 1 10 10 C 1.76194 * 100.00220 * 174.34598 * 9 7 2 11 11 C 1.39120 * 120.18970 * 353.15297 * 10 9 7 12 12 C 1.37911 * 120.05120 * 179.97438 * 11 10 9 13 13 C 1.38652 * 120.43793 * 359.97438 * 12 11 10 14 14 C 1.37810 * 120.38325 * 0.02562 * 13 12 11 15 15 C 1.39672 * 119.93747 * 359.72378 * 14 13 12 16 16 C 1.47429 * 120.21756 * 180.27711 * 15 14 13 17 17 O 1.21604 * 120.00335 * 180.25528 * 16 15 14 18 18 N 1.34780 * 119.99956 * 0.25452 * 16 15 14 19 19 C 1.46497 * 120.00366 * 180.02562 * 18 16 15 20 20 C 1.52992 * 109.47339 * 179.97438 * 19 18 16 21 21 C 1.50704 * 109.47362 * 179.97438 * 20 19 18 22 22 C 1.38220 * 120.01103 * 100.00201 * 21 20 19 23 23 C 1.38219 * 120.02758 * 179.97438 * 22 21 20 24 24 C 1.38265 * 120.05051 * 0.02562 * 23 22 21 25 25 C 1.38181 * 120.02401 * 0.02562 * 24 23 22 26 26 C 1.38431 * 120.01544 * 279.72972 * 21 20 19 27 27 F 1.35107 * 120.02662 * 359.97438 * 26 21 20 28 28 H 0.97004 * 119.99870 * 0.02562 * 1 2 3 29 29 H 1.07999 * 119.96676 * 359.97438 * 11 10 9 30 30 H 1.07997 * 119.77946 * 179.97438 * 12 11 10 31 31 H 1.07999 * 119.80833 * 179.97438 * 13 12 11 32 32 H 1.08008 * 120.03005 * 180.02562 * 14 13 12 33 33 H 0.97001 * 119.99608 * 359.97438 * 18 16 15 34 34 H 1.08998 * 109.47080 * 300.00111 * 19 18 16 35 35 H 1.09003 * 109.46889 * 59.99363 * 19 18 16 36 36 H 1.08998 * 109.47338 * 300.00213 * 20 19 18 37 37 H 1.09006 * 109.47013 * 60.00585 * 20 19 18 38 38 H 1.08007 * 119.98521 * 359.97438 * 22 21 20 39 39 H 1.07997 * 119.97792 * 179.97438 * 23 22 21 40 40 H 1.08002 * 119.98850 * 179.97438 * 24 23 22 41 41 H 1.08004 * 120.00983 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7096 1.3463 0.0006 5 1 1.8909 2.3964 -1.2125 6 1 1.8909 2.3963 1.2126 7 6 2.0095 -1.2022 -0.0005 8 1 3.0895 -1.2023 -0.0010 9 16 1.1285 -2.7281 -0.0019 10 6 2.4709 -3.8564 -0.1731 11 6 3.7583 -3.3822 -0.4032 12 6 4.8070 -4.2679 -0.5363 13 6 4.5891 -5.6339 -0.4417 14 6 3.3211 -6.1233 -0.2141 15 6 2.2483 -5.2403 -0.0716 16 6 0.8902 -5.7569 0.1781 17 8 -0.0417 -4.9848 0.2969 18 7 0.6816 -7.0849 0.2748 19 6 -0.6679 -7.5983 0.5224 20 6 -0.6284 -9.1264 0.5867 21 6 -2.0166 -9.6546 0.8421 22 6 -2.7731 -10.1452 -0.2055 23 6 -4.0461 -10.6301 0.0284 24 6 -4.5645 -10.6247 1.3102 25 6 -3.8104 -10.1337 2.3589 26 6 -2.5323 -9.6538 2.1267 27 9 -1.7915 -9.1800 3.1524 28 1 -0.4850 0.8401 -0.0004 29 1 3.9365 -2.3196 -0.4778 30 1 5.8047 -3.8949 -0.7153 31 1 5.4177 -6.3184 -0.5479 32 1 3.1579 -7.1884 -0.1410 33 1 1.4250 -7.7008 0.1797 34 1 -1.0388 -7.2040 1.4685 35 1 -1.3294 -7.2859 -0.2856 36 1 -0.2577 -9.5204 -0.3595 37 1 0.0331 -9.4391 1.3947 38 1 -2.3694 -10.1496 -1.2072 39 1 -4.6367 -11.0129 -0.7907 40 1 -5.5595 -11.0035 1.4918 41 1 -4.2157 -10.1291 3.3600 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000027379663.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:04 Heat of formation + Delta-G solvation = -33.616050 kcal Electronic energy + Delta-G solvation = -25790.931312 eV Core-core repulsion = 21869.105030 eV Total energy + Delta-G solvation = -3921.826282 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.094 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.07021 -39.64347 -39.21974 -37.47836 -35.35108 -32.86058 -32.74107 -30.89603 -30.60879 -30.25826 -28.37414 -25.81386 -24.36426 -23.06897 -22.67319 -21.89570 -21.39343 -20.08274 -18.22467 -17.77133 -17.15086 -16.75171 -16.27527 -15.86150 -15.68822 -15.42634 -15.13169 -15.05744 -14.48433 -14.40040 -13.97125 -13.71093 -13.69827 -13.37911 -13.32541 -13.00586 -12.92224 -12.63046 -12.17119 -11.94335 -11.90225 -11.58031 -11.37113 -11.23444 -11.20600 -11.18822 -10.90065 -10.31290 -9.79681 -9.64954 -9.49483 -9.26802 -8.92037 -8.77711 -8.71541 -8.31910 -8.04501 -6.52178 -6.44982 -4.15354 0.84674 0.90324 1.54845 2.02984 3.11631 3.12774 3.21266 3.23925 3.43198 3.53379 3.54155 4.00607 4.07452 4.39909 4.45687 4.50599 4.65476 4.83886 4.89321 4.96059 5.00533 5.12628 5.14546 5.32830 5.34963 5.41895 5.59511 5.61184 5.72037 5.76171 5.87501 5.90632 6.06098 6.07013 6.11280 6.13485 6.39937 6.58715 6.60930 6.75100 6.86261 7.04090 7.14551 7.46092 7.60370 7.91259 8.17806 8.80992 9.01317 10.58337 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.014068 B = 0.002465 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.859028 B =11354.443912 C =12740.506952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.083 3.917 3 Si 0.919 3.081 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.595 4.595 8 H 0.091 0.909 9 S 0.184 5.816 10 C -0.057 4.057 11 C -0.153 4.153 12 C -0.077 4.077 13 C -0.187 4.187 14 C -0.061 4.061 15 C -0.177 4.177 16 C 0.552 3.448 17 O -0.508 6.508 18 N -0.739 5.739 19 C 0.129 3.871 20 C -0.092 4.092 21 C -0.112 4.112 22 C -0.086 4.086 23 C -0.130 4.130 24 C -0.095 4.095 25 C -0.154 4.154 26 C 0.104 3.896 27 F -0.134 7.134 28 H 0.274 0.726 29 H 0.139 0.861 30 H 0.112 0.888 31 H 0.111 0.889 32 H 0.110 0.890 33 H 0.395 0.605 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.134 0.866 39 H 0.129 0.871 40 H 0.131 0.869 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.740 -22.467 0.097 22.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.128 4.128 3 Si 0.745 3.255 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.742 4.742 8 H 0.109 0.891 9 S 0.449 5.551 10 C -0.177 4.177 11 C -0.178 4.178 12 C -0.099 4.099 13 C -0.212 4.212 14 C -0.081 4.081 15 C -0.192 4.192 16 C 0.341 3.659 17 O -0.385 6.385 18 N -0.394 5.394 19 C 0.005 3.995 20 C -0.129 4.129 21 C -0.114 4.114 22 C -0.104 4.104 23 C -0.148 4.148 24 C -0.113 4.113 25 C -0.172 4.172 26 C 0.085 3.915 27 F -0.113 7.113 28 H 0.084 0.916 29 H 0.156 0.844 30 H 0.130 0.870 31 H 0.129 0.871 32 H 0.128 0.872 33 H 0.229 0.771 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.103 0.897 37 H 0.101 0.899 38 H 0.152 0.848 39 H 0.147 0.853 40 H 0.149 0.851 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -5.069 -21.605 0.363 22.195 hybrid contribution 2.428 0.917 0.046 2.596 sum -2.641 -20.689 0.409 20.861 Atomic orbital electron populations 1.69989 1.06236 1.28295 1.44511 1.25106 0.94970 0.99639 0.93090 0.86097 0.79963 0.81298 0.78163 1.19151 1.20234 1.20235 1.24100 0.97035 0.94071 1.58969 0.89091 1.84781 1.02279 0.92911 1.75157 1.23095 1.00748 0.97020 0.96825 1.21441 0.91716 1.00867 1.03791 1.21082 0.98117 0.93385 0.97328 1.20630 0.96317 0.95269 1.08967 1.20891 0.92595 0.97431 0.97214 1.19102 0.92604 0.92657 1.14854 1.18315 0.88993 0.81529 0.77067 1.90789 1.43585 1.55318 1.48784 1.45803 1.09755 1.07339 1.76499 1.21159 0.84836 0.91272 1.02227 1.20736 0.93063 0.95437 1.03675 1.19770 0.97538 1.02042 0.92025 1.21010 0.93998 0.96888 0.98463 1.21218 0.95803 1.00555 0.97216 1.21030 0.99738 0.98275 0.92248 1.21179 0.93244 1.01759 1.01057 1.17611 0.90472 0.99152 0.84274 1.91526 1.76256 1.85910 1.57596 0.91590 0.84364 0.87024 0.87080 0.87176 0.77068 0.91452 0.91353 0.89690 0.89925 0.84847 0.85277 0.85088 0.84713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.93 13.22 55.49 0.73 -24.20 16 2 C 0.08 2.29 5.49 -17.46 -0.10 2.19 16 3 Si 0.92 20.84 29.55 -169.99 -5.02 15.81 16 4 H -0.27 -5.89 7.11 56.52 0.40 -5.48 16 5 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 6 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.60 -16.56 9.00 30.94 0.28 -16.28 16 8 H 0.09 2.40 4.98 -52.49 -0.26 2.14 16 9 S 0.18 5.01 18.56 -107.50 -2.00 3.01 16 10 C -0.06 -1.32 6.15 -38.39 -0.24 -1.55 16 11 C -0.15 -3.23 9.22 -39.37 -0.36 -3.59 16 12 C -0.08 -1.32 10.03 -39.55 -0.40 -1.72 16 13 C -0.19 -2.89 10.02 -39.58 -0.40 -3.28 16 14 C -0.06 -0.97 9.53 -39.20 -0.37 -1.34 16 15 C -0.18 -3.53 5.89 -104.75 -0.62 -4.15 16 16 C 0.55 10.90 7.75 -12.52 -0.10 10.81 16 17 O -0.51 -12.18 13.77 5.27 0.07 -12.11 16 18 N -0.74 -10.65 5.51 -61.39 -0.34 -10.99 16 19 C 0.13 1.70 5.65 -4.05 -0.02 1.67 16 20 C -0.09 -0.86 5.19 -27.89 -0.14 -1.00 16 21 C -0.11 -1.09 5.14 -104.56 -0.54 -1.63 16 22 C -0.09 -0.69 9.67 -39.59 -0.38 -1.07 16 23 C -0.13 -0.92 10.04 -39.58 -0.40 -1.32 16 24 C -0.09 -0.68 10.04 -39.59 -0.40 -1.08 16 25 C -0.15 -1.35 10.03 -39.51 -0.40 -1.74 16 26 C 0.10 1.11 7.24 -39.42 -0.29 0.82 16 27 F -0.13 -1.65 16.66 2.25 0.04 -1.61 16 28 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 29 H 0.14 3.04 5.03 -52.49 -0.26 2.78 16 30 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 31 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 32 H 0.11 1.29 6.40 -52.48 -0.34 0.96 16 33 H 0.39 4.38 6.50 -40.82 -0.27 4.12 16 34 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.08 0.62 8.01 -51.93 -0.42 0.21 16 37 H 0.08 0.75 7.94 -51.93 -0.41 0.33 16 38 H 0.13 0.82 8.04 -52.48 -0.42 0.40 16 39 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 40 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 41 H 0.13 0.97 8.06 -52.48 -0.42 0.54 16 LS Contribution 366.46 15.07 5.52 5.52 Total: -1.00 -33.40 366.46 -10.32 -43.73 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -4.47 Total: 5.10 kcal Atomic # 6 Polarization: -19.39 SS G_CDS: -4.86 Total: -24.26 kcal Atomic # 7 Polarization: -35.59 SS G_CDS: 0.40 Total: -35.19 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: 0.07 Total: -12.11 kcal Atomic # 9 Polarization: -1.65 SS G_CDS: 0.04 Total: -1.61 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 16 Polarization: 5.01 SS G_CDS: -2.00 Total: 3.01 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.40 -10.32 -43.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000027379663.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.111 kcal (2) G-P(sol) polarization free energy of solvation -33.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds