Wall clock time and date at job start Tue Mar 31 2020 06:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34479 * 125.35997 * 2 1 4 4 C 1.46728 * 106.50882 * 179.97438 * 3 2 1 5 5 C 1.46317 * 127.06013 * 179.97438 * 4 3 2 6 6 N 1.31019 * 120.00184 * 179.97438 * 5 4 3 7 7 N 1.40103 * 120.00155 * 179.97438 * 6 5 4 8 8 C 1.34777 * 119.99745 * 180.02562 * 7 6 5 9 9 O 1.22060 * 120.00057 * 0.02562 * 8 7 6 10 10 C 1.40089 * 119.99663 * 179.97438 * 8 7 6 11 11 H 1.08005 * 119.99822 * 0.02562 * 10 8 7 12 12 C 1.40115 * 120.00075 * 180.02562 * 10 8 7 13 13 N 1.30662 * 119.99783 * 359.97438 * 12 10 8 14 14 Si 1.86797 * 120.00054 * 180.02562 * 12 10 8 15 15 H 1.48499 * 109.47115 * 359.97438 * 14 12 10 16 16 H 1.48505 * 109.47228 * 119.99882 * 14 12 10 17 17 H 1.48500 * 109.46781 * 239.99767 * 14 12 10 18 18 C 1.39206 * 105.87945 * 359.74452 * 4 3 2 19 19 C 1.50697 * 126.00094 * 180.25102 * 18 4 3 20 20 N 1.34812 * 107.99600 * 0.41049 * 18 4 3 21 21 C 1.40095 * 124.83247 * 179.83651 * 20 18 4 22 22 C 1.38870 * 120.07364 * 269.44670 * 21 20 18 23 23 C 1.38101 * 119.93718 * 179.74699 * 22 21 20 24 24 C 1.38309 * 120.09532 * 0.55243 * 23 22 21 25 25 C 1.38254 * 120.15094 * 359.69854 * 24 23 22 26 26 C 1.38234 * 120.05857 * 0.02740 * 25 24 23 27 27 Cl 1.73598 * 120.04871 * 179.97438 * 26 25 24 28 28 H 1.09006 * 109.46845 * 270.02738 * 1 2 3 29 29 H 1.08998 * 109.46849 * 30.02626 * 1 2 3 30 30 H 1.08998 * 109.47142 * 150.02823 * 1 2 3 31 31 H 1.08008 * 126.74849 * 359.93916 * 3 2 1 32 32 H 1.08005 * 119.99711 * 359.97292 * 5 4 3 33 33 H 0.97001 * 119.99693 * 0.02562 * 7 6 5 34 34 H 0.96992 * 119.99630 * 180.02562 * 13 12 10 35 35 H 1.09000 * 109.47301 * 270.18665 * 19 18 4 36 36 H 1.09004 * 109.47202 * 30.18915 * 19 18 4 37 37 H 1.08998 * 109.47198 * 150.18915 * 19 18 4 38 38 H 1.07998 * 120.02818 * 359.97438 * 22 21 20 39 39 H 1.08005 * 119.95132 * 180.25577 * 23 22 21 40 40 H 1.08002 * 119.92128 * 179.72458 * 24 23 22 41 41 H 1.08007 * 119.97437 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2853 1.0967 0.0000 4 6 3.6738 0.6226 0.0006 5 6 4.8856 1.4427 0.0003 6 7 6.0641 0.8702 0.0015 7 7 7.2244 1.6555 0.0007 8 6 8.4366 1.0665 0.0013 9 8 8.5236 -0.1510 0.0022 10 6 9.5968 1.8517 0.0000 11 1 9.5197 2.9290 -0.0012 12 6 10.8571 1.2394 0.0001 13 7 10.9503 -0.0639 0.0020 14 14 12.4041 2.2864 -0.0010 15 1 12.0293 3.7233 -0.0025 16 1 13.2067 1.9850 1.2116 17 1 13.2061 1.9832 -1.2134 18 6 3.6017 -0.7675 0.0069 19 6 4.7733 -1.7153 0.0153 20 7 2.2997 -1.1171 0.0007 21 6 1.8250 -2.4351 0.0009 22 6 1.5847 -3.0884 -1.2007 23 6 1.1217 -4.3895 -1.1972 24 6 0.8862 -5.0387 0.0012 25 6 1.1192 -4.3901 1.1997 26 6 1.5880 -3.0897 1.2036 27 17 1.8799 -2.2754 2.7087 28 1 -0.3633 0.0005 1.0277 29 1 -0.3633 0.8897 -0.5142 30 1 -0.3633 -0.8902 -0.5134 31 1 1.9535 2.1246 -0.0009 32 1 4.8085 2.5200 -0.0009 33 1 7.1552 2.6230 -0.0004 34 1 11.8227 -0.4877 0.0025 35 1 5.0613 -1.9461 -1.0104 36 1 5.6128 -1.2508 0.5326 37 1 4.4933 -2.6347 0.5295 38 1 1.7632 -2.5807 -2.1370 39 1 0.9386 -4.8992 -2.1317 40 1 0.5200 -6.0547 0.0006 41 1 0.9348 -4.8999 2.1339 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000028216557.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:10 Heat of formation + Delta-G solvation = 71.756215 kcal Electronic energy + Delta-G solvation = -26532.955359 eV Core-core repulsion = 22633.574616 eV Total energy + Delta-G solvation = -3899.380743 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.098 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.47326 -39.12352 -37.40657 -36.68551 -35.10622 -33.20385 -32.65012 -32.27576 -31.23691 -30.36766 -28.87173 -28.58934 -26.57103 -24.22270 -23.45839 -23.13861 -21.70158 -20.03570 -19.84548 -18.66522 -17.41377 -16.96624 -16.53411 -16.32905 -15.54857 -15.42494 -14.98206 -14.28874 -14.23259 -14.20174 -13.95822 -13.42544 -13.16183 -13.12000 -12.86904 -12.83064 -12.56952 -12.28619 -12.09445 -12.04386 -11.85934 -11.78295 -11.56321 -11.37018 -11.26500 -11.14663 -11.06379 -10.76535 -10.55593 -10.27210 -9.44737 -9.15322 -9.09832 -8.99410 -8.56746 -7.85794 -7.62724 -6.78786 -6.31138 -4.85809 0.59835 0.75178 1.82237 2.07575 2.52381 2.85611 3.07771 3.10531 3.15579 3.20618 3.83303 3.91460 4.24344 4.35000 4.50895 4.54049 4.65740 4.79725 4.90044 5.04809 5.16875 5.32402 5.39879 5.42521 5.49939 5.67122 5.73761 5.78391 5.80843 5.90101 5.90289 5.93196 6.11928 6.18822 6.21978 6.27316 6.59879 6.79587 6.96155 7.23853 7.28656 7.42115 7.63083 7.99526 8.11865 8.84825 8.94710 9.47676 10.47711 10.79655 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.017104 B = 0.002478 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.653435 B =11295.037010 C =11927.525666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.010 3.990 3 C -0.162 4.162 4 C -0.121 4.121 5 C 0.069 3.931 6 N -0.210 5.210 7 N -0.597 5.597 8 C 0.562 3.438 9 O -0.558 6.558 10 C -0.538 4.538 11 H 0.069 0.931 12 C 0.089 3.911 13 N -0.745 5.745 14 Si 0.914 3.086 15 H -0.262 1.262 16 H -0.274 1.274 17 H -0.274 1.274 18 C 0.080 3.920 19 C -0.085 4.085 20 N -0.404 5.404 21 C 0.129 3.871 22 C -0.093 4.093 23 C -0.108 4.108 24 C -0.099 4.099 25 C -0.107 4.107 26 C -0.027 4.027 27 Cl -0.045 7.045 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.057 0.943 31 H 0.143 0.857 32 H 0.102 0.898 33 H 0.365 0.635 34 H 0.272 0.728 35 H 0.070 0.930 36 H 0.112 0.888 37 H 0.049 0.951 38 H 0.139 0.861 39 H 0.137 0.863 40 H 0.137 0.863 41 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.927 -6.188 -0.243 24.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.096 4.096 3 C -0.188 4.188 4 C -0.129 4.129 5 C -0.141 4.141 6 N -0.019 5.019 7 N -0.342 5.342 8 C 0.370 3.630 9 O -0.438 6.438 10 C -0.575 4.575 11 H 0.087 0.913 12 C -0.135 4.135 13 N -0.373 5.373 14 Si 0.738 3.262 15 H -0.186 1.186 16 H -0.199 1.199 17 H -0.199 1.199 18 C -0.034 4.034 19 C -0.142 4.142 20 N -0.081 5.081 21 C 0.039 3.961 22 C -0.112 4.112 23 C -0.127 4.127 24 C -0.117 4.117 25 C -0.126 4.126 26 C -0.055 4.055 27 Cl -0.015 7.015 28 H 0.085 0.915 29 H 0.097 0.903 30 H 0.076 0.924 31 H 0.160 0.840 32 H 0.119 0.881 33 H 0.200 0.800 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.130 0.870 37 H 0.067 0.933 38 H 0.157 0.843 39 H 0.155 0.845 40 H 0.155 0.845 41 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -23.125 -8.221 -0.102 24.543 hybrid contribution 0.447 2.015 0.147 2.069 sum -22.678 -6.206 0.045 23.512 Atomic orbital electron populations 1.20254 0.88573 1.02627 1.02239 1.20090 0.92913 0.84740 1.11824 1.21599 0.90839 0.96946 1.09400 1.18929 0.90933 0.89897 1.13188 1.23167 0.89680 0.95954 1.05257 1.74966 0.93768 1.25692 1.07515 1.47926 1.02895 1.06354 1.77038 1.16537 0.79595 0.88641 0.78196 1.90724 1.84863 1.14106 1.54150 1.19654 0.90075 0.94362 1.53361 0.91267 1.25745 1.00357 0.94892 0.92465 1.70064 1.25220 1.09726 1.32254 0.86207 0.80836 0.80716 0.78403 1.18567 1.19916 1.19921 1.21155 0.83057 0.94468 1.04677 1.20488 0.94761 0.95960 1.03024 1.40705 1.05557 1.02273 1.59598 1.17420 1.01457 0.85141 0.92127 1.21363 0.97788 0.95020 0.97024 1.21195 0.98634 0.93969 0.98904 1.21260 0.98589 1.00298 0.91546 1.21062 0.99496 0.92266 0.99799 1.21335 1.02539 0.94287 0.87359 1.98421 1.94253 1.78929 1.29934 0.91495 0.90328 0.92378 0.83961 0.88073 0.79978 0.91729 0.91106 0.86986 0.93254 0.84345 0.84518 0.84487 0.84200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.75 10.03 36.01 0.36 -0.39 16 2 C 0.01 0.13 6.82 -81.62 -0.56 -0.43 16 3 C -0.16 -2.29 10.99 -37.48 -0.41 -2.70 16 4 C -0.12 -2.11 6.34 -102.86 -0.65 -2.76 16 5 C 0.07 1.31 11.05 -14.65 -0.16 1.15 16 6 N -0.21 -4.93 8.65 32.08 0.28 -4.65 16 7 N -0.60 -14.88 6.26 28.81 0.18 -14.70 16 8 C 0.56 16.73 7.63 -15.56 -0.12 16.61 16 9 O -0.56 -18.83 15.18 4.86 0.07 -18.75 16 10 C -0.54 -15.26 9.22 -38.18 -0.35 -15.61 16 11 H 0.07 1.78 7.85 -52.48 -0.41 1.36 16 12 C 0.09 2.45 5.49 -17.35 -0.10 2.36 16 13 N -0.75 -22.16 11.69 55.55 0.65 -21.52 16 14 Si 0.91 19.80 29.56 -169.99 -5.02 14.78 16 15 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 16 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 17 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 18 C 0.08 1.37 6.95 -80.93 -0.56 0.81 16 19 C -0.08 -1.56 9.48 36.00 0.34 -1.22 16 20 N -0.40 -5.71 2.12 -51.86 -0.11 -5.82 16 21 C 0.13 1.55 4.21 -83.58 -0.35 1.20 16 22 C -0.09 -0.91 9.97 -39.40 -0.39 -1.31 16 23 C -0.11 -0.79 10.04 -39.61 -0.40 -1.19 16 24 C -0.10 -0.67 10.04 -39.55 -0.40 -1.07 16 25 C -0.11 -0.91 9.82 -39.58 -0.39 -1.30 16 26 C -0.03 -0.31 6.34 -39.32 -0.25 -0.56 16 27 Cl -0.04 -0.56 28.44 -51.86 -1.47 -2.04 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.52 7.75 -51.93 -0.40 0.11 16 31 H 0.14 1.65 8.06 -52.48 -0.42 1.23 16 32 H 0.10 1.67 8.04 -52.48 -0.42 1.24 16 33 H 0.37 7.80 8.62 -182.59 -1.57 6.22 16 34 H 0.27 7.23 8.29 -40.82 -0.34 6.89 16 35 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.11 2.49 6.36 -51.93 -0.33 2.16 16 37 H 0.05 0.82 7.76 -51.93 -0.40 0.42 16 38 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 39 H 0.14 0.65 8.06 -52.48 -0.42 0.23 16 40 H 0.14 0.55 8.06 -52.49 -0.42 0.12 16 41 H 0.14 0.93 8.06 -52.48 -0.42 0.50 16 LS Contribution 377.03 15.07 5.68 5.68 Total: -1.00 -36.46 377.03 -10.19 -46.66 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -6.06 Total: 6.77 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: -4.39 Total: -6.41 kcal Atomic # 7 Polarization: -47.68 SS G_CDS: 1.00 Total: -46.69 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: 0.07 Total: -18.75 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -1.47 Total: -2.04 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -36.46 -10.19 -46.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000028216557.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.413 kcal (2) G-P(sol) polarization free energy of solvation -36.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds