Wall clock time and date at job start Tue Mar 31 2020 07:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30866 * 1 3 3 Si 1.86797 * 120.00104 * 2 1 4 4 H 1.48499 * 109.47026 * 269.99666 * 3 2 1 5 5 H 1.48501 * 109.46872 * 29.99785 * 3 2 1 6 6 H 1.48499 * 109.47002 * 149.99772 * 3 2 1 7 7 C 1.39910 * 119.99725 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99723 * 189.61124 * 7 2 1 9 9 C 1.41151 * 120.00301 * 9.61286 * 7 2 1 10 10 C 1.40872 * 120.16187 * 209.75183 * 9 7 2 11 11 C 1.36368 * 119.82614 * 180.02562 * 10 9 7 12 12 C 1.39485 * 120.17026 * 0.02562 * 11 10 9 13 13 N 1.39242 * 119.83577 * 179.97438 * 12 11 10 14 14 C 1.34771 * 120.00025 * 213.22653 * 13 12 11 15 15 O 1.21279 * 120.00197 * 7.07188 * 14 13 12 16 16 C 1.50697 * 120.00037 * 187.08138 * 14 13 12 17 17 C 1.53000 * 109.47481 * 174.01759 * 16 14 13 18 18 C 1.52997 * 109.47376 * 181.26644 * 17 16 14 19 19 C 1.50701 * 109.47016 * 60.95569 * 18 17 16 20 20 O 1.20821 * 120.00179 * 353.24135 * 19 18 17 21 21 O 1.34234 * 119.99808 * 173.23675 * 19 18 17 22 22 C 1.53003 * 109.46591 * 301.26736 * 17 16 14 23 23 C 1.52999 * 109.46920 * 179.97438 * 22 17 16 24 24 C 1.53001 * 109.47347 * 300.00195 * 23 22 17 25 25 C 1.52994 * 109.46995 * 59.99702 * 24 23 22 26 26 C 1.52993 * 109.47440 * 300.00034 * 25 24 23 27 27 C 1.39481 * 120.33169 * 0.25492 * 12 11 10 28 28 C 1.36378 * 120.16933 * 359.44248 * 27 12 11 29 29 H 0.96996 * 120.00449 * 0.02562 * 1 2 3 30 30 H 1.08000 * 120.08495 * 359.97438 * 10 9 7 31 31 H 1.07999 * 119.91932 * 179.97438 * 11 10 9 32 32 H 0.97001 * 119.99327 * 33.22599 * 13 12 11 33 33 H 1.09000 * 109.47175 * 54.01303 * 16 14 13 34 34 H 1.09002 * 109.46586 * 294.01751 * 16 14 13 35 35 H 1.09001 * 109.47127 * 300.95981 * 18 17 16 36 36 H 1.08997 * 109.46999 * 180.95734 * 18 17 16 37 37 H 0.96705 * 116.99885 * 179.97438 * 21 19 18 38 38 H 1.09000 * 109.47335 * 299.99591 * 22 17 16 39 39 H 1.08997 * 109.47663 * 60.00075 * 22 17 16 40 40 H 1.08995 * 109.47344 * 179.97438 * 23 22 17 41 41 H 1.09002 * 109.47075 * 60.00008 * 23 22 17 42 42 H 1.09000 * 109.46395 * 300.00109 * 24 23 22 43 43 H 1.08997 * 109.46865 * 180.02562 * 24 23 22 44 44 H 1.09009 * 109.46943 * 180.02562 * 25 24 23 45 45 H 1.08995 * 109.47641 * 60.00757 * 25 24 23 46 46 H 1.09000 * 109.47631 * 300.00622 * 26 25 24 47 47 H 1.09002 * 109.47644 * 180.02562 * 26 25 24 48 48 H 1.08003 * 119.91651 * 179.73096 * 27 12 11 49 49 H 1.07997 * 120.08981 * 180.25335 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.4902 2.0463 -1.4001 5 1 1.4401 2.6526 0.7000 6 1 3.5402 1.4401 0.7001 7 6 2.0082 -1.2117 0.0005 8 1 3.0769 -1.2182 0.1567 9 6 1.3173 -2.4256 -0.2030 10 6 1.7928 -3.6169 0.3794 11 6 1.1202 -4.7859 0.1778 12 6 -0.0354 -4.8042 -0.6032 13 7 -0.7164 -6.0019 -0.8049 14 6 -1.3509 -6.2279 -1.9722 15 8 -1.2235 -5.4484 -2.8926 16 6 -2.2188 -7.4492 -2.1339 17 6 -2.9342 -7.3914 -3.4851 18 6 -3.8396 -8.6154 -3.6357 19 6 -4.8749 -8.6122 -2.5407 20 8 -4.8143 -7.7934 -1.6543 21 8 -5.8646 -9.5190 -2.5501 22 6 -3.7803 -6.1188 -3.5600 23 6 -4.4952 -6.0606 -4.9115 24 6 -3.4587 -6.0508 -6.0368 25 6 -2.6126 -7.3233 -5.9618 26 6 -1.8976 -7.3815 -4.6104 27 6 -0.5090 -3.6297 -1.1879 28 6 0.1494 -2.4519 -0.9903 29 1 -0.4850 0.8400 -0.0004 30 1 2.6881 -3.6045 0.9833 31 1 1.4836 -5.7002 0.6232 32 1 -0.7340 -6.6734 -0.1052 33 1 -2.9573 -7.4787 -1.3327 34 1 -1.5984 -8.3443 -2.0892 35 1 -3.2391 -9.5224 -3.5652 36 1 -4.3362 -8.5829 -4.6054 37 1 -6.5049 -9.4777 -1.8265 38 1 -4.5186 -6.1255 -2.7581 39 1 -3.1354 -5.2467 -3.4528 40 1 -5.0984 -5.1543 -4.9647 41 1 -5.1402 -6.9326 -5.0192 42 1 -2.8137 -5.1788 -5.9290 43 1 -3.9680 -6.0089 -6.9995 44 1 -1.8737 -7.3161 -6.7633 45 1 -3.2574 -8.1954 -6.0696 46 1 -1.2527 -6.5095 -4.5026 47 1 -1.2944 -8.2879 -4.5571 48 1 -1.4020 -3.6523 -1.7949 49 1 -0.2208 -1.5426 -1.4402 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000029010847.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:05 Heat of formation + Delta-G solvation = -121.104442 kcal Electronic energy + Delta-G solvation = -31054.088448 eV Core-core repulsion = 26945.008912 eV Total energy + Delta-G solvation = -4109.079535 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.30192 -39.76383 -38.49432 -37.01631 -36.32774 -34.37962 -33.24234 -32.82878 -30.69036 -29.73878 -29.37741 -28.67683 -26.94433 -24.69775 -22.68910 -22.49610 -21.68620 -21.19669 -20.63725 -19.39703 -18.53949 -18.28494 -17.27778 -17.04571 -16.53464 -16.17005 -15.98475 -15.38123 -15.11574 -14.79632 -14.31356 -14.17807 -13.94606 -13.88094 -13.35238 -13.22149 -12.93338 -12.72976 -12.42564 -12.34952 -12.17062 -12.03074 -11.90020 -11.73360 -11.60796 -11.37218 -11.32093 -11.23600 -11.12063 -11.08814 -10.80246 -10.66800 -10.47703 -10.29011 -9.99612 -9.79261 -9.72625 -9.52226 -9.28191 -8.96337 -8.67494 -7.48610 -6.87221 -6.63550 -4.27494 1.99748 2.61955 2.84214 3.04774 3.10564 3.13663 3.14927 3.46919 3.81635 3.98548 4.45719 4.64209 4.71175 4.72711 4.91422 5.05008 5.18211 5.20958 5.28192 5.30716 5.42134 5.48822 5.54972 5.62954 5.70423 5.73238 5.76302 5.89842 5.96307 6.06712 6.17765 6.23744 6.29427 6.31038 6.38133 6.41350 6.51078 6.66424 6.69268 6.92538 7.04559 7.09007 7.21292 7.34108 7.63953 7.69969 7.73290 8.02615 8.10255 8.26584 8.38441 8.67974 8.87235 8.94168 9.06123 10.28815 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016737 B = 0.002578 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.514836 B =10857.239632 C =11376.594022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.072 3.928 3 Si 0.911 3.089 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.461 4.461 8 H 0.076 0.924 9 C 0.103 3.897 10 C -0.210 4.210 11 C -0.112 4.112 12 C 0.006 3.994 13 N -0.655 5.655 14 C 0.505 3.495 15 O -0.523 6.523 16 C -0.150 4.150 17 C -0.018 4.018 18 C -0.111 4.111 19 C 0.476 3.524 20 O -0.501 6.501 21 O -0.522 6.522 22 C -0.134 4.134 23 C -0.117 4.117 24 C -0.119 4.119 25 C -0.117 4.117 26 C -0.125 4.125 27 C -0.089 4.089 28 C -0.145 4.145 29 H 0.279 0.721 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.393 0.607 33 H 0.115 0.885 34 H 0.083 0.917 35 H 0.105 0.895 36 H 0.111 0.889 37 H 0.408 0.592 38 H 0.072 0.928 39 H 0.096 0.904 40 H 0.058 0.942 41 H 0.050 0.950 42 H 0.068 0.932 43 H 0.054 0.946 44 H 0.059 0.941 45 H 0.055 0.945 46 H 0.108 0.892 47 H 0.053 0.947 48 H 0.102 0.898 49 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.118 -17.477 -7.423 21.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.145 4.145 3 Si 0.736 3.264 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.491 4.491 8 H 0.094 0.906 9 C 0.100 3.900 10 C -0.230 4.230 11 C -0.132 4.132 12 C -0.086 4.086 13 N -0.298 5.298 14 C 0.292 3.708 15 O -0.401 6.401 16 C -0.190 4.190 17 C -0.019 4.019 18 C -0.149 4.149 19 C 0.319 3.681 20 O -0.389 6.389 21 O -0.335 6.335 22 C -0.171 4.171 23 C -0.155 4.155 24 C -0.156 4.156 25 C -0.155 4.155 26 C -0.162 4.162 27 C -0.109 4.109 28 C -0.165 4.165 29 H 0.090 0.910 30 H 0.113 0.887 31 H 0.107 0.893 32 H 0.226 0.774 33 H 0.133 0.867 34 H 0.101 0.899 35 H 0.123 0.877 36 H 0.129 0.871 37 H 0.267 0.733 38 H 0.090 0.910 39 H 0.115 0.885 40 H 0.077 0.923 41 H 0.069 0.931 42 H 0.087 0.913 43 H 0.072 0.928 44 H 0.078 0.922 45 H 0.073 0.927 46 H 0.126 0.874 47 H 0.072 0.928 48 H 0.120 0.880 49 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -9.954 -16.547 -8.148 20.958 hybrid contribution -0.159 0.305 1.021 1.077 sum -10.112 -16.241 -7.127 20.416 Atomic orbital electron populations 1.69806 1.07363 1.28939 1.36730 1.25888 0.94849 1.01165 0.92564 0.86266 0.80272 0.80665 0.79189 1.19400 1.20366 1.18747 1.19519 0.95598 0.90488 1.43517 0.90588 1.17670 0.91850 0.92094 0.88341 1.20596 1.02679 0.93355 1.06362 1.20036 0.94404 0.97177 1.01570 1.17224 0.96853 0.84697 1.09842 1.43080 1.52174 1.18402 1.16100 1.20450 0.80565 0.87572 0.82182 1.90552 1.62400 1.48207 1.38923 1.22095 0.99687 0.96916 1.00309 1.20026 0.94247 0.93319 0.94290 1.21697 0.94737 1.01518 0.96903 1.23689 0.80845 0.77154 0.86444 1.90645 1.73509 1.37269 1.37476 1.84554 1.39224 1.55668 1.54006 1.22044 0.99550 0.98651 0.96815 1.21552 0.97566 1.00898 0.95475 1.21520 0.97774 0.98736 0.97613 1.21548 0.98763 0.97596 0.97570 1.21943 0.97562 1.04162 0.92499 1.20425 0.99322 0.91425 0.99769 1.21041 0.98415 0.96341 1.00743 0.91019 0.88681 0.89282 0.77406 0.86692 0.89877 0.87720 0.87061 0.73350 0.90958 0.88530 0.92288 0.93127 0.91306 0.92759 0.92193 0.92677 0.87372 0.92809 0.88006 0.86064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.28 10.84 55.55 0.60 -20.68 16 2 C 0.07 1.84 5.26 -17.34 -0.09 1.75 16 3 Si 0.91 19.15 29.57 -169.99 -5.03 14.12 16 4 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 5 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 6 H -0.26 -5.45 7.11 56.52 0.40 -5.04 16 7 C -0.46 -12.42 9.04 -37.85 -0.34 -12.76 16 8 H 0.08 1.96 7.86 -52.48 -0.41 1.55 16 9 C 0.10 2.79 5.54 -106.80 -0.59 2.20 16 10 C -0.21 -5.16 9.74 -39.26 -0.38 -5.54 16 11 C -0.11 -2.48 9.89 -39.79 -0.39 -2.88 16 12 C 0.01 0.14 6.29 -83.57 -0.53 -0.39 16 13 N -0.66 -11.65 5.31 -9.74 -0.05 -11.71 16 14 C 0.50 8.56 6.91 -10.99 -0.08 8.48 16 15 O -0.52 -10.40 9.10 5.56 0.05 -10.35 16 16 C -0.15 -1.88 4.50 -27.88 -0.13 -2.00 16 17 C -0.02 -0.21 0.26 -154.51 -0.04 -0.25 16 18 C -0.11 -0.95 4.19 -27.88 -0.12 -1.06 16 19 C 0.48 4.52 7.71 36.01 0.28 4.80 16 20 O -0.50 -6.27 12.16 -18.75 -0.23 -6.49 16 21 O -0.52 -3.74 13.42 -39.27 -0.53 -4.27 16 22 C -0.13 -1.80 4.11 -26.73 -0.11 -1.91 16 23 C -0.12 -1.32 5.65 -26.73 -0.15 -1.47 16 24 C -0.12 -1.30 5.92 -26.73 -0.16 -1.46 16 25 C -0.12 -1.17 5.65 -26.74 -0.15 -1.32 16 26 C -0.12 -1.45 4.45 -26.73 -0.12 -1.57 16 27 C -0.09 -2.23 8.57 -39.79 -0.34 -2.57 16 28 C -0.15 -3.93 8.60 -39.26 -0.34 -4.27 16 29 H 0.28 6.77 8.30 -40.82 -0.34 6.44 16 30 H 0.10 2.18 8.06 -52.49 -0.42 1.76 16 31 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 32 H 0.39 5.64 8.82 -40.82 -0.36 5.28 16 33 H 0.12 1.49 5.34 -51.93 -0.28 1.22 16 34 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.11 0.84 4.81 -51.93 -0.25 0.59 16 37 H 0.41 1.39 9.10 45.56 0.41 1.81 16 38 H 0.07 1.05 5.69 -51.93 -0.30 0.75 16 39 H 0.10 1.64 5.62 -51.93 -0.29 1.34 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.05 0.49 6.45 -51.93 -0.34 0.16 16 42 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 43 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.06 0.58 8.14 -51.92 -0.42 0.15 16 45 H 0.05 0.45 6.41 -51.93 -0.33 0.12 16 46 H 0.11 1.65 5.41 -51.93 -0.28 1.37 16 47 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.10 2.53 6.42 -52.48 -0.34 2.19 16 49 H 0.12 3.42 6.25 -52.49 -0.33 3.09 16 LS Contribution 373.59 15.07 5.63 5.63 Total: -1.00 -31.49 373.59 -9.35 -40.84 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: -6.02 Total: 15.12 kcal Atomic # 6 Polarization: -18.44 SS G_CDS: -3.78 Total: -22.22 kcal Atomic # 7 Polarization: -32.94 SS G_CDS: 0.55 Total: -32.39 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: -0.70 Total: -21.11 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.03 Total: 14.12 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.49 -9.35 -40.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000029010847.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.265 kcal (2) G-P(sol) polarization free energy of solvation -31.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds