Wall clock time and date at job start Tue Mar 31 2020 06:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42905 * 109.47177 * 2 1 4 4 C 1.35736 * 116.99779 * 179.97438 * 3 2 1 5 5 C 1.38975 * 119.91439 * 0.02562 * 4 3 2 6 6 C 1.37699 * 120.10566 * 180.02562 * 5 4 3 7 7 C 1.39770 * 119.92881 * 359.97438 * 6 5 4 8 8 C 1.47550 * 120.08397 * 179.97438 * 7 6 5 9 9 O 1.21587 * 120.00522 * 359.72896 * 8 7 6 10 10 N 1.34777 * 119.99992 * 180.02562 * 8 7 6 11 11 C 1.39126 * 120.00425 * 176.68680 * 10 8 7 12 12 C 1.39514 * 119.84099 * 217.48926 * 11 10 8 13 13 C 1.36353 * 120.16833 * 179.72147 * 12 11 10 14 14 C 1.40882 * 119.83048 * 0.54446 * 13 12 11 15 15 C 1.41133 * 120.16173 * 179.69938 * 14 13 12 16 16 H 1.08006 * 119.99930 * 158.00302 * 15 14 13 17 17 C 1.39910 * 120.00457 * 338.01114 * 15 14 13 18 18 N 1.30871 * 119.99266 * 327.55549 * 17 15 14 19 19 Si 1.86793 * 120.00320 * 147.55351 * 17 15 14 20 20 H 1.48500 * 109.47055 * 94.98845 * 19 17 15 21 21 H 1.48507 * 109.47324 * 214.98737 * 19 17 15 22 22 H 1.48503 * 109.47299 * 334.98542 * 19 17 15 23 23 C 1.40877 * 119.67540 * 359.72759 * 14 13 12 24 24 C 1.36359 * 119.83377 * 359.97438 * 23 14 13 25 25 C 1.39746 * 119.82641 * 0.25940 * 7 6 5 26 26 C 1.37805 * 119.89505 * 359.48043 * 25 7 6 27 27 Cl 1.73596 * 119.96772 * 180.25950 * 26 25 7 28 28 H 1.08999 * 109.47415 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46972 * 300.00088 * 1 2 3 30 30 H 1.09003 * 109.47212 * 59.99518 * 1 2 3 31 31 H 1.09000 * 109.46972 * 239.99912 * 2 1 3 32 32 H 1.09001 * 109.47178 * 119.99704 * 2 1 3 33 33 H 1.08001 * 119.94950 * 0.02562 * 5 4 3 34 34 H 1.07999 * 120.03813 * 179.97438 * 6 5 4 35 35 H 0.97006 * 119.99951 * 356.68809 * 10 8 7 36 36 H 1.08003 * 119.91053 * 359.97438 * 12 11 10 37 37 H 1.07998 * 120.08557 * 180.27162 * 13 12 11 38 38 H 0.97010 * 119.99448 * 180.02562 * 18 17 15 39 39 H 1.08004 * 120.08281 * 179.97438 * 23 14 13 40 40 H 1.08005 * 119.91819 * 179.97438 * 24 23 14 41 41 H 1.08003 * 120.05343 * 179.74703 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3520 1.5251 0.0005 5 6 4.1969 0.4217 0.0005 6 6 5.5626 0.5975 0.0016 7 6 6.0996 1.8879 0.0022 8 6 7.5625 2.0802 0.0039 9 8 8.3026 1.1156 0.0098 10 7 8.0785 3.3253 0.0050 11 6 9.4560 3.5075 0.0762 12 6 9.9786 4.5661 0.8195 13 6 11.3277 4.7476 0.8986 14 6 12.1940 3.8695 0.2178 15 6 13.5913 4.0546 0.2897 16 1 14.2566 3.2277 0.0895 17 6 14.1148 5.3093 0.6203 18 7 13.4829 6.3973 0.2602 19 14 15.7153 5.4314 1.5755 20 1 16.8456 5.6031 0.6278 21 1 15.6567 6.5980 2.4927 22 1 15.9161 4.1902 2.3658 23 6 11.6586 2.8062 -0.5354 24 6 10.3075 2.6337 -0.6002 25 6 5.2474 2.9954 0.0071 26 6 3.8817 2.8112 0.0006 27 17 2.8213 4.1856 0.0000 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.7817 -0.5753 -0.0003 34 1 6.2182 -0.2608 0.0020 35 1 7.4895 4.0945 -0.0439 36 1 9.3131 5.2412 1.3370 37 1 11.7311 5.5649 1.4779 38 1 13.8461 7.2673 0.4891 39 1 12.3166 2.1294 -1.0602 40 1 9.8956 1.8192 -1.1776 41 1 5.6584 3.9941 0.0117 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000030830651.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:50 Heat of formation + Delta-G solvation = -35.374587 kcal Electronic energy + Delta-G solvation = -25756.181325 eV Core-core repulsion = 21819.862290 eV Total energy + Delta-G solvation = -3936.319034 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.092 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.73741 -39.64131 -37.86414 -37.06866 -36.44078 -34.54298 -33.16162 -32.38640 -31.20203 -30.18669 -29.55719 -28.77287 -25.29901 -24.65672 -23.37164 -22.23408 -21.58364 -20.79516 -19.79508 -18.87916 -17.69351 -17.31999 -16.75436 -16.60384 -15.89762 -15.41014 -15.20394 -14.72458 -14.68909 -14.30332 -14.03523 -13.92893 -13.80407 -13.15327 -13.11475 -12.82879 -12.68878 -12.57928 -12.21487 -12.09954 -11.98861 -11.67141 -11.45323 -11.38391 -11.16443 -11.13273 -11.10947 -10.94922 -10.55275 -10.19961 -9.76316 -9.52803 -9.26446 -9.12040 -8.72688 -8.50218 -7.56501 -7.16833 -6.90494 -4.28859 0.63660 0.85056 1.90532 2.56853 2.66471 2.87788 3.04015 3.06692 3.10152 3.21806 3.63898 3.80866 3.87817 4.30215 4.43695 4.46237 4.48746 4.67716 4.77058 4.80079 4.90589 5.08753 5.20632 5.32277 5.33391 5.56711 5.62846 5.67663 5.84295 6.06321 6.17850 6.20048 6.41298 6.74158 6.85638 6.93942 6.98109 7.12241 7.26714 7.54890 7.66684 7.86531 8.00313 8.23183 8.25264 8.52743 8.71272 8.82000 8.97519 9.99722 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.027586 B = 0.001972 C = 0.001868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.781403 B =14194.394196 C =14986.999851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.051 3.949 3 O -0.302 6.302 4 C 0.158 3.842 5 C -0.207 4.207 6 C -0.016 4.016 7 C -0.148 4.148 8 C 0.544 3.456 9 O -0.530 6.530 10 N -0.640 5.640 11 C -0.025 4.025 12 C -0.100 4.100 13 C -0.171 4.171 14 C 0.113 3.887 15 C -0.464 4.464 16 H 0.082 0.918 17 C 0.088 3.912 18 N -0.767 5.767 19 Si 0.896 3.104 20 H -0.269 1.269 21 H -0.274 1.274 22 H -0.257 1.257 23 C -0.224 4.224 24 C -0.063 4.063 25 C -0.043 4.043 26 C -0.077 4.077 27 Cl -0.054 7.054 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.142 0.858 34 H 0.147 0.853 35 H 0.393 0.607 36 H 0.090 0.910 37 H 0.108 0.892 38 H 0.284 0.716 39 H 0.095 0.905 40 H 0.103 0.897 41 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.356 -6.985 0.099 23.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.024 4.024 3 O -0.215 6.215 4 C 0.110 3.890 5 C -0.226 4.226 6 C -0.035 4.035 7 C -0.152 4.152 8 C 0.331 3.669 9 O -0.408 6.408 10 N -0.282 5.282 11 C -0.117 4.117 12 C -0.120 4.120 13 C -0.191 4.191 14 C 0.110 3.890 15 C -0.491 4.491 16 H 0.101 0.899 17 C -0.134 4.134 18 N -0.390 5.390 19 Si 0.720 3.280 20 H -0.194 1.194 21 H -0.199 1.199 22 H -0.181 1.181 23 C -0.244 4.244 24 C -0.083 4.083 25 C -0.062 4.062 26 C -0.104 4.104 27 Cl -0.025 7.025 28 H 0.098 0.902 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.160 0.840 34 H 0.164 0.836 35 H 0.227 0.773 36 H 0.108 0.892 37 H 0.126 0.874 38 H 0.095 0.905 39 H 0.113 0.887 40 H 0.121 0.879 41 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -22.095 -7.136 0.092 23.219 hybrid contribution 0.352 0.577 0.402 0.787 sum -21.743 -6.558 0.494 22.716 Atomic orbital electron populations 1.21774 0.92383 1.02988 1.03742 1.22910 0.96214 0.81460 1.01843 1.86123 1.17962 1.29821 1.87571 1.18840 0.83253 0.92327 0.94540 1.21178 0.93756 0.97943 1.09695 1.21190 0.94120 0.97081 0.91124 1.19985 0.93709 0.93506 1.07953 1.17952 0.86757 0.83868 0.78287 1.90771 1.60231 1.39838 1.49994 1.42828 1.07119 1.06956 1.71333 1.17019 0.80320 1.03800 1.10561 1.20171 0.95641 0.97326 0.98840 1.20611 0.91484 1.02655 1.04328 1.17608 0.93234 0.90108 0.88024 1.19523 0.92285 0.95739 1.41570 0.89949 1.25954 0.99096 0.95168 0.93203 1.69949 1.38678 0.99275 1.31111 0.86501 0.81655 0.79349 0.80539 1.19436 1.19864 1.18065 1.20590 0.93568 1.03625 1.06634 1.20303 0.93294 0.97418 0.97297 1.21108 0.90164 0.99689 0.95235 1.19972 0.91021 0.86560 1.12862 1.98372 1.65495 1.41482 1.97173 0.90193 0.91376 0.91380 0.91566 0.91566 0.84019 0.83559 0.77258 0.89207 0.87447 0.90548 0.88688 0.87918 0.83847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 10.28 37.16 0.38 -0.33 16 2 C 0.05 0.31 5.45 37.16 0.20 0.51 16 3 O -0.30 -2.92 9.58 -18.91 -0.18 -3.10 16 4 C 0.16 1.69 6.69 -38.99 -0.26 1.43 16 5 C -0.21 -2.01 9.01 -39.51 -0.36 -2.37 16 6 C -0.02 -0.19 9.58 -39.21 -0.38 -0.57 16 7 C -0.15 -2.03 5.87 -104.96 -0.62 -2.65 16 8 C 0.54 9.69 7.57 -12.46 -0.09 9.59 16 9 O -0.53 -11.32 13.96 5.29 0.07 -11.25 16 10 N -0.64 -11.49 5.24 -10.68 -0.06 -11.55 16 11 C -0.03 -0.56 6.25 -83.60 -0.52 -1.08 16 12 C -0.10 -2.27 9.90 -39.79 -0.39 -2.67 16 13 C -0.17 -4.35 8.74 -39.26 -0.34 -4.69 16 14 C 0.11 3.01 5.57 -106.80 -0.60 2.42 16 15 C -0.46 -12.18 8.94 -37.86 -0.34 -12.52 16 16 H 0.08 2.10 8.02 -52.48 -0.42 1.68 16 17 C 0.09 2.15 4.77 -17.34 -0.08 2.07 16 18 N -0.77 -19.22 11.78 55.55 0.65 -18.57 16 19 Si 0.90 18.08 29.66 -169.99 -5.04 13.04 16 20 H -0.27 -5.33 7.11 56.52 0.40 -4.92 16 21 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 22 H -0.26 -5.23 7.11 56.52 0.40 -4.82 16 23 C -0.22 -5.70 9.74 -39.26 -0.38 -6.08 16 24 C -0.06 -1.53 8.59 -39.78 -0.34 -1.87 16 25 C -0.04 -0.50 9.31 -39.18 -0.36 -0.87 16 26 C -0.08 -0.88 6.32 -39.43 -0.25 -1.13 16 27 Cl -0.05 -0.59 28.49 -51.86 -1.48 -2.07 16 28 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.34 7.65 -51.93 -0.40 -0.06 16 32 H 0.07 0.34 7.65 -51.93 -0.40 -0.06 16 33 H 0.14 0.97 6.28 -52.49 -0.33 0.64 16 34 H 0.15 1.72 7.64 -52.49 -0.40 1.32 16 35 H 0.39 5.66 6.85 -40.82 -0.28 5.38 16 36 H 0.09 1.78 8.06 -52.48 -0.42 1.36 16 37 H 0.11 2.76 6.52 -52.49 -0.34 2.42 16 38 H 0.28 6.38 8.30 -40.82 -0.34 6.04 16 39 H 0.09 2.29 8.06 -52.48 -0.42 1.87 16 40 H 0.10 2.43 6.45 -52.48 -0.34 2.09 16 41 H 0.14 1.47 6.40 -52.48 -0.34 1.13 16 LS Contribution 364.92 15.07 5.50 5.50 Total: -1.00 -30.33 364.92 -9.75 -40.08 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -4.49 Total: 8.73 kcal Atomic # 6 Polarization: -16.07 SS G_CDS: -4.73 Total: -20.81 kcal Atomic # 7 Polarization: -30.72 SS G_CDS: 0.60 Total: -30.12 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: -0.11 Total: -14.35 kcal Atomic # 14 Polarization: 18.08 SS G_CDS: -5.04 Total: 13.04 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -1.48 Total: -2.07 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.33 -9.75 -40.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000030830651.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.705 kcal (2) G-P(sol) polarization free energy of solvation -30.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds