Wall clock time and date at job start Tue Mar 31 2020 06:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38286 * 119.93098 * 2 1 4 4 C 1.38109 * 120.06977 * 179.97438 * 3 2 1 5 5 C 1.38862 * 119.93200 * 0.02562 * 4 3 2 6 6 N 1.39932 * 120.07006 * 180.02562 * 5 4 3 7 7 C 1.34532 * 126.69382 * 0.04123 * 6 5 4 8 8 O 1.21542 * 123.76381 * 359.96478 * 7 6 5 9 9 N 1.33785 * 112.45998 * 179.97438 * 7 6 5 10 10 C 1.46503 * 124.17574 * 180.02562 * 9 7 6 11 11 C 1.50700 * 109.47025 * 89.97851 * 10 9 7 12 12 O 1.21282 * 119.99640 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00075 * 179.97438 * 11 10 9 14 14 C 1.46494 * 120.00206 * 180.02562 * 13 11 10 15 15 C 1.50698 * 109.47389 * 180.02562 * 14 13 11 16 16 H 1.07996 * 119.99881 * 359.97438 * 15 14 13 17 17 C 1.37875 * 119.99873 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00295 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99948 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47253 * 89.99542 * 19 17 15 21 21 H 1.48499 * 109.47595 * 210.00183 * 19 17 15 22 22 H 1.48505 * 109.47015 * 330.00126 * 19 17 15 23 23 C 1.34768 * 111.64877 * 0.02562 * 9 7 6 24 24 O 1.21231 * 127.16452 * 180.02562 * 23 9 7 25 25 C 1.47315 * 126.69255 * 179.97438 * 6 5 4 26 26 H 1.09004 * 110.59860 * 298.72011 * 25 6 5 27 27 C 1.53006 * 110.59782 * 61.50704 * 25 6 5 28 28 C 1.38864 * 119.86137 * 0.27094 * 5 4 3 29 29 C 1.38117 * 119.92747 * 359.40667 * 28 5 4 30 30 H 1.08993 * 109.47009 * 90.00290 * 1 2 3 31 31 H 1.09004 * 109.47079 * 210.00233 * 1 2 3 32 32 H 1.09005 * 109.47254 * 329.99706 * 1 2 3 33 33 H 1.08003 * 119.95938 * 359.97438 * 3 2 1 34 34 H 1.07999 * 120.03050 * 179.97438 * 4 3 2 35 35 H 1.09005 * 109.46765 * 209.97800 * 10 9 7 36 36 H 1.09000 * 109.47343 * 329.97263 * 10 9 7 37 37 H 0.97003 * 119.99699 * 0.02562 * 13 11 10 38 38 H 1.09006 * 109.47320 * 300.00397 * 14 13 11 39 39 H 1.09000 * 109.47001 * 59.99709 * 14 13 11 40 40 H 0.97001 * 119.99825 * 179.97438 * 18 17 15 41 41 H 1.09001 * 109.47002 * 59.99957 * 27 25 6 42 42 H 1.08993 * 109.46955 * 180.02562 * 27 25 6 43 43 H 1.09000 * 109.47050 * 300.00223 * 27 25 6 44 44 H 1.08004 * 120.03824 * 179.72970 * 28 5 4 45 45 H 1.08004 * 119.96641 * 180.33598 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1984 0.0000 4 6 3.5781 1.2018 0.0005 5 6 4.2739 0.0000 0.0005 6 7 5.6732 0.0001 0.0016 7 6 6.4771 1.0788 0.0035 8 8 6.0705 2.2242 0.0039 9 7 7.7738 0.7499 0.0047 10 6 8.8695 1.7224 0.0073 11 6 9.2431 2.0543 1.4291 12 8 8.6525 1.5298 2.3494 13 7 10.2341 2.9333 1.6778 14 6 10.5976 3.2555 3.0598 15 6 11.7246 4.2560 3.0626 16 1 12.1298 4.6154 2.1283 17 6 12.2390 4.7115 4.2579 18 7 11.7459 4.2734 5.3957 19 14 13.6365 5.9511 4.2614 20 1 13.0777 7.3270 4.2629 21 1 14.4701 5.7540 5.4745 22 1 14.4726 5.7578 3.0495 23 6 7.9478 -0.5865 0.0031 24 8 9.0003 -1.1881 0.0040 25 6 6.5534 -1.1812 0.0023 26 1 6.3887 -1.7817 0.8970 27 6 6.3282 -2.0211 -1.2567 28 6 3.5781 -1.2017 -0.0057 29 6 2.1970 -1.1984 0.0005 30 1 -0.3633 -0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3634 0.8900 0.5139 33 1 1.6552 2.1327 -0.0004 34 1 4.1163 2.1381 0.0001 35 1 9.7328 1.2984 -0.5057 36 1 8.5513 2.6297 -0.5061 37 1 10.7066 3.3525 0.9416 38 1 9.7345 3.6796 3.5731 39 1 10.9156 2.3479 3.5729 40 1 12.1081 4.5937 6.2366 41 1 6.5458 -1.4189 -2.1388 42 1 6.9872 -2.8890 -1.2371 43 1 5.2907 -2.3537 -1.2907 44 1 4.1164 -2.1380 -0.0101 45 1 1.6553 -2.1327 0.0012 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000031631032.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:25 Heat of formation + Delta-G solvation = -44.054165 kcal Electronic energy + Delta-G solvation = -29806.109139 eV Core-core repulsion = 25596.830411 eV Total energy + Delta-G solvation = -4209.278728 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.89261 -39.80901 -38.81040 -38.67367 -36.73727 -35.56957 -34.25349 -32.82747 -32.39278 -31.52655 -30.67478 -29.44484 -27.26577 -26.21411 -25.01992 -23.34980 -23.06295 -22.42584 -21.39608 -20.56428 -19.79730 -18.32369 -17.87854 -17.28063 -16.45143 -16.41954 -16.11080 -15.77448 -15.65740 -15.10948 -14.84022 -14.72427 -14.67838 -14.49096 -14.17572 -14.09822 -13.96481 -13.72358 -13.49160 -12.92261 -12.86197 -12.66442 -12.57609 -12.49337 -12.25600 -12.01131 -11.86809 -11.60600 -11.46406 -11.01615 -10.90132 -10.70889 -10.52061 -10.43668 -10.30419 -10.20586 -9.43565 -9.19616 -9.10433 -8.77767 -8.11952 -7.98783 -6.18558 -4.26006 0.96182 1.15786 1.52722 1.68143 2.53091 2.81515 3.14802 3.23762 3.29654 3.32081 3.56717 3.62496 3.97437 4.18634 4.34132 4.41500 4.56603 4.63232 4.66819 4.82549 4.98178 5.04964 5.06878 5.10989 5.15762 5.17712 5.20096 5.29245 5.33754 5.35476 5.45141 5.55450 5.63445 5.65486 5.84287 6.08810 6.22945 6.27586 6.40004 6.78545 6.91817 7.14459 7.23850 7.30926 7.46949 7.60525 7.81850 7.92955 8.49276 8.70379 8.95474 9.40219 10.91629 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.017169 B = 0.002325 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.434883 B =12038.641906 C =13065.442287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.115 4.115 3 C -0.087 4.087 4 C -0.147 4.147 5 C 0.189 3.811 6 N -0.561 5.561 7 C 0.710 3.290 8 O -0.518 6.518 9 N -0.555 5.555 10 C 0.096 3.904 11 C 0.486 3.514 12 O -0.546 6.546 13 N -0.704 5.704 14 C 0.251 3.749 15 C -0.544 4.544 16 H 0.064 0.936 17 C 0.063 3.937 18 N -0.885 5.885 19 Si 0.906 3.094 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.272 1.272 23 C 0.535 3.465 24 O -0.455 6.455 25 C 0.089 3.911 26 H 0.135 0.865 27 C -0.155 4.155 28 C -0.157 4.157 29 C -0.091 4.091 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.127 0.873 34 H 0.155 0.845 35 H 0.124 0.876 36 H 0.125 0.875 37 H 0.393 0.607 38 H 0.028 0.972 39 H 0.028 0.972 40 H 0.266 0.734 41 H 0.069 0.931 42 H 0.089 0.911 43 H 0.085 0.915 44 H 0.130 0.870 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.058 -12.899 -16.912 28.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.116 4.116 3 C -0.106 4.106 4 C -0.167 4.167 5 C 0.096 3.904 6 N -0.289 5.289 7 C 0.413 3.587 8 O -0.391 6.391 9 N -0.299 5.299 10 C -0.029 4.029 11 C 0.269 3.731 12 O -0.425 6.425 13 N -0.353 5.353 14 C 0.130 3.870 15 C -0.583 4.583 16 H 0.083 0.917 17 C -0.141 4.141 18 N -0.522 5.522 19 Si 0.733 3.267 20 H -0.204 1.204 21 H -0.210 1.210 22 H -0.197 1.197 23 C 0.321 3.679 24 O -0.323 6.323 25 C -0.018 4.018 26 H 0.152 0.848 27 C -0.213 4.213 28 C -0.178 4.178 29 C -0.109 4.109 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.145 0.855 34 H 0.172 0.828 35 H 0.142 0.858 36 H 0.143 0.857 37 H 0.226 0.774 38 H 0.046 0.954 39 H 0.046 0.954 40 H 0.076 0.924 41 H 0.088 0.912 42 H 0.108 0.892 43 H 0.103 0.897 44 H 0.148 0.852 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -19.029 -12.888 -16.009 28.009 hybrid contribution 1.177 0.921 -0.023 1.495 sum -17.851 -11.967 -16.033 26.813 Atomic orbital electron populations 1.20740 0.91121 1.02726 1.02131 1.19920 0.96232 0.93141 1.02312 1.20942 0.93177 0.97806 0.98669 1.21535 0.94551 0.98229 1.02415 1.17383 0.78093 0.95048 0.99842 1.44938 1.04139 1.06561 1.73236 1.15662 0.80676 0.84889 0.77452 1.90901 1.76205 1.18640 1.53323 1.45825 1.07300 1.08965 1.67783 1.21648 0.89401 0.93771 0.98069 1.20477 0.81524 0.80937 0.90200 1.90690 1.53216 1.52778 1.45795 1.46380 1.34355 1.42356 1.12172 1.19155 0.95743 0.96182 0.75889 1.21202 1.18220 1.25701 0.93142 0.91746 1.24963 0.97236 0.96661 0.95195 1.69976 1.41653 1.43044 0.97539 0.86386 0.81504 0.81114 0.77730 1.20417 1.20994 1.19705 1.20623 0.91016 0.81932 0.74311 1.90825 1.30403 1.65873 1.45226 1.22272 0.86724 0.88922 1.03850 0.84785 1.22098 1.04478 1.00069 0.94669 1.20780 0.94529 0.95989 1.06465 1.20775 0.92898 0.97746 0.99513 0.91387 0.91680 0.91596 0.85468 0.82764 0.85848 0.85745 0.77410 0.95382 0.95389 0.92394 0.91179 0.89181 0.89668 0.85234 0.85530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.65 10.01 36.01 0.36 -0.29 16 2 C -0.12 -0.97 5.88 -104.59 -0.62 -1.58 16 3 C -0.09 -0.86 9.69 -39.61 -0.38 -1.24 16 4 C -0.15 -1.80 9.36 -39.40 -0.37 -2.17 16 5 C 0.19 2.19 6.55 -83.70 -0.55 1.64 16 6 N -0.56 -6.96 2.95 -112.25 -0.33 -7.30 16 7 C 0.71 10.93 8.23 -88.02 -0.72 10.21 16 8 O -0.52 -9.17 14.45 5.33 0.08 -9.09 16 9 N -0.55 -8.29 2.09 -122.02 -0.26 -8.54 16 10 C 0.10 1.40 6.18 -5.19 -0.03 1.37 16 11 C 0.49 9.89 7.90 -10.99 -0.09 9.80 16 12 O -0.55 -13.54 16.43 5.56 0.09 -13.45 16 13 N -0.70 -14.81 5.55 -61.48 -0.34 -15.15 16 14 C 0.25 6.71 5.43 -5.20 -0.03 6.68 16 15 C -0.54 -14.80 9.28 -34.44 -0.32 -15.12 16 16 H 0.06 1.62 7.60 -52.49 -0.40 1.22 16 17 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 18 N -0.88 -26.28 13.29 55.43 0.74 -25.54 16 19 Si 0.91 20.94 29.54 -169.99 -5.02 15.92 16 20 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 23 C 0.53 7.36 7.65 -10.55 -0.08 7.27 16 24 O -0.46 -7.19 17.76 5.60 0.10 -7.09 16 25 C 0.09 0.90 3.36 -68.20 -0.23 0.67 16 26 H 0.13 1.17 8.14 -51.93 -0.42 0.74 16 27 C -0.16 -1.04 9.28 37.16 0.34 -0.69 16 28 C -0.16 -1.37 8.73 -39.39 -0.34 -1.71 16 29 C -0.09 -0.71 9.69 -39.61 -0.38 -1.10 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.32 8.08 -51.93 -0.42 -0.10 16 32 H 0.07 0.36 8.08 -51.93 -0.42 -0.06 16 33 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 34 H 0.15 2.20 5.41 -52.49 -0.28 1.92 16 35 H 0.12 1.45 8.00 -51.93 -0.42 1.04 16 36 H 0.12 1.54 7.86 -51.93 -0.41 1.13 16 37 H 0.39 6.84 8.32 -40.82 -0.34 6.50 16 38 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 41 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.08 0.44 5.53 -51.93 -0.29 0.15 16 44 H 0.13 0.83 5.70 -52.48 -0.30 0.53 16 45 H 0.13 0.68 8.06 -52.48 -0.42 0.26 16 LS Contribution 383.91 15.07 5.79 5.79 Total: -1.00 -36.46 383.91 -8.48 -44.94 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -5.79 Total: 4.11 kcal Atomic # 6 Polarization: 18.94 SS G_CDS: -3.54 Total: 15.41 kcal Atomic # 7 Polarization: -56.34 SS G_CDS: -0.19 Total: -56.53 kcal Atomic # 8 Polarization: -29.89 SS G_CDS: 0.27 Total: -29.63 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -36.46 -8.48 -44.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031631032.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.886 kcal (2) G-P(sol) polarization free energy of solvation -36.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds