Wall clock time and date at job start Tue Mar 31 2020 06:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38220 * 120.01688 * 2 1 4 4 C 1.38223 * 120.02632 * 180.02562 * 3 2 1 5 5 C 1.38272 * 120.04965 * 359.97438 * 4 3 2 6 6 C 1.50697 * 119.98226 * 179.97438 * 5 4 3 7 7 N 1.46498 * 109.47009 * 90.00626 * 6 5 4 8 8 C 1.34777 * 120.00005 * 179.97438 * 7 6 5 9 9 O 1.21610 * 120.00253 * 359.97438 * 8 7 6 10 10 C 1.47426 * 120.00023 * 179.97438 * 8 7 6 11 11 C 1.39672 * 120.21634 * 0.02562 * 10 8 7 12 12 C 1.37809 * 119.94038 * 180.02562 * 11 10 8 13 13 C 1.38657 * 120.38308 * 359.97226 * 12 11 10 14 14 C 1.37913 * 120.43296 * 0.02562 * 13 12 11 15 15 C 1.39105 * 120.05439 * 359.97438 * 14 13 12 16 16 S 1.76205 * 120.19168 * 179.97438 * 15 14 13 17 17 C 1.76202 * 99.99800 * 6.86957 * 16 15 14 18 18 H 1.07995 * 120.00295 * 5.65288 * 17 16 15 19 19 C 1.38803 * 119.99855 * 185.66146 * 17 16 15 20 20 N 1.31557 * 120.00018 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99867 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.46822 * 89.99976 * 21 19 17 23 23 H 1.48506 * 109.47089 * 209.99330 * 21 19 17 24 24 H 1.48496 * 109.47457 * 329.99855 * 21 19 17 25 25 C 1.38171 * 120.02453 * 0.27765 * 5 4 3 26 26 C 1.38441 * 120.00694 * 180.02562 * 2 1 3 27 27 F 1.35093 * 120.02799 * 359.97438 * 26 2 1 28 28 H 1.09000 * 109.46813 * 89.99699 * 1 2 3 29 29 H 1.08992 * 109.47298 * 209.99722 * 1 2 3 30 30 H 1.09000 * 109.46660 * 330.00216 * 1 2 3 31 31 H 1.07999 * 119.98105 * 0.02562 * 3 2 1 32 32 H 1.07997 * 119.97396 * 179.97438 * 4 3 2 33 33 H 1.09001 * 109.47373 * 329.99956 * 6 5 4 34 34 H 1.09003 * 109.46955 * 210.00274 * 6 5 4 35 35 H 0.96996 * 120.00303 * 359.97438 * 7 6 5 36 36 H 1.08007 * 120.03352 * 359.97438 * 11 10 8 37 37 H 1.08007 * 119.80710 * 179.97438 * 12 11 10 38 38 H 1.07997 * 119.78390 * 179.74245 * 13 12 11 39 39 H 1.08002 * 119.97414 * 180.02562 * 14 13 12 40 40 H 0.97003 * 119.99998 * 180.02562 * 20 19 17 41 41 H 1.08002 * 120.00851 * 179.72459 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1985 1.1968 0.0000 4 6 3.5807 1.1970 -0.0005 5 6 4.2733 0.0003 -0.0005 6 6 5.7803 0.0023 -0.0017 7 7 6.2697 0.0034 1.3791 8 6 7.5949 0.0048 1.6244 9 8 8.3845 0.0046 0.6995 10 6 8.0874 0.0065 3.0140 11 6 7.1846 0.0062 4.0797 12 6 7.6512 0.0083 5.3764 13 6 9.0141 0.0102 5.6313 14 6 9.9194 0.0105 4.5908 15 6 9.4683 0.0083 3.2749 16 16 10.6217 0.0094 1.9429 17 6 12.1248 -0.1944 2.8395 18 1 12.0987 -0.3678 3.9051 19 6 13.3425 -0.1317 2.1762 20 7 13.3744 0.0792 0.8781 21 14 14.9360 -0.3470 3.1269 22 1 15.3063 -1.7849 3.1532 23 1 16.0154 0.4301 2.4663 24 1 14.7532 0.1425 4.5169 25 6 3.5842 -1.1973 -0.0058 26 6 2.1994 -1.1989 -0.0005 27 9 1.5247 -2.3692 -0.0005 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3633 -0.8899 0.5137 30 1 -0.3632 0.8900 0.5138 31 1 1.6585 2.1321 0.0004 32 1 4.1201 2.1327 -0.0010 33 1 6.1421 0.8925 -0.5162 34 1 6.1444 -0.8874 -0.5155 35 1 5.6400 0.0032 2.1169 36 1 6.1217 0.0051 3.8878 37 1 6.9511 0.0085 6.1989 38 1 9.3691 0.0160 6.6512 39 1 10.9794 0.0115 4.7979 40 1 14.2254 0.1226 0.4145 41 1 4.1255 -2.1319 -0.0103 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032843611.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:31 Heat of formation + Delta-G solvation = -34.342061 kcal Electronic energy + Delta-G solvation = -25784.937976 eV Core-core repulsion = 21863.080212 eV Total energy + Delta-G solvation = -3921.857765 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.094 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.15515 -39.94228 -39.16811 -37.45910 -35.08122 -32.87374 -32.75987 -30.88576 -30.71260 -30.28097 -28.41208 -25.83220 -25.06864 -23.20179 -22.91193 -21.93520 -21.28005 -20.15141 -18.41237 -17.50004 -16.98264 -16.80556 -16.07361 -15.97643 -15.82944 -15.52386 -15.14649 -14.78736 -14.48041 -14.20944 -13.97458 -13.76325 -13.70699 -13.61122 -13.07480 -12.99715 -12.98264 -12.78195 -12.44454 -12.12379 -11.86628 -11.75232 -11.59648 -11.30939 -11.20867 -11.19471 -10.94081 -10.33210 -9.86416 -9.70623 -9.51801 -9.22161 -8.88973 -8.83841 -8.73863 -8.34396 -8.07378 -6.54474 -6.46848 -4.17457 0.74300 0.88236 1.51878 2.01120 3.08917 3.10010 3.12518 3.19233 3.41515 3.49535 3.70561 3.92476 4.06239 4.29061 4.39655 4.48141 4.55712 4.75405 4.94191 4.97157 5.11816 5.19186 5.20821 5.26910 5.35856 5.38330 5.40235 5.59217 5.62895 5.71794 5.79142 5.82947 5.96425 6.00233 6.10846 6.22190 6.37774 6.56584 6.58387 6.67564 6.84081 7.01820 7.12552 7.44041 7.58311 7.85826 8.15578 8.74973 8.99447 10.56419 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.019501 B = 0.002303 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.499784 B =12153.507087 C =12970.631551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.117 4.117 3 C -0.095 4.095 4 C -0.106 4.106 5 C -0.078 4.078 6 C 0.163 3.837 7 N -0.735 5.735 8 C 0.553 3.447 9 O -0.508 6.508 10 C -0.177 4.177 11 C -0.061 4.061 12 C -0.187 4.187 13 C -0.076 4.076 14 C -0.153 4.153 15 C -0.056 4.056 16 S 0.185 5.815 17 C -0.596 4.596 18 H 0.091 0.909 19 C 0.083 3.917 20 N -0.858 5.858 21 Si 0.919 3.081 22 H -0.273 1.273 23 H -0.279 1.279 24 H -0.268 1.268 25 C -0.131 4.131 26 C 0.093 3.907 27 F -0.138 7.138 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.134 0.866 32 H 0.134 0.866 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.396 0.604 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.112 0.888 39 H 0.139 0.861 40 H 0.275 0.725 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.852 1.426 0.882 22.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.118 4.118 3 C -0.113 4.113 4 C -0.125 4.125 5 C -0.079 4.079 6 C 0.040 3.960 7 N -0.391 5.391 8 C 0.342 3.658 9 O -0.385 6.385 10 C -0.193 4.193 11 C -0.081 4.081 12 C -0.211 4.211 13 C -0.099 4.099 14 C -0.178 4.178 15 C -0.176 4.176 16 S 0.449 5.551 17 C -0.742 4.742 18 H 0.109 0.891 19 C -0.128 4.128 20 N -0.490 5.490 21 Si 0.745 3.255 22 H -0.199 1.199 23 H -0.205 1.205 24 H -0.192 1.192 25 C -0.150 4.150 26 C 0.074 3.926 27 F -0.117 7.117 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.151 0.849 32 H 0.152 0.848 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.231 0.769 36 H 0.128 0.872 37 H 0.129 0.871 38 H 0.130 0.870 39 H 0.156 0.844 40 H 0.085 0.915 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -21.981 1.508 -1.475 22.082 hybrid contribution 0.667 -0.487 2.382 2.521 sum -21.313 1.021 0.907 21.357 Atomic orbital electron populations 1.20741 0.90168 1.03390 1.02853 1.20000 0.97078 0.92038 1.02675 1.20935 0.93993 0.97054 0.99329 1.21221 0.94033 0.98125 0.99110 1.19804 0.95670 0.92460 0.99933 1.20108 0.87539 1.03677 0.84715 1.45873 1.07214 1.78595 1.07369 1.18328 0.81449 0.76704 0.89289 1.90794 1.53992 1.48373 1.45300 1.19072 0.92587 1.15819 0.91794 1.20893 0.97354 0.97225 0.92592 1.20636 0.95361 1.09294 0.95849 1.21090 0.93293 0.97196 0.98277 1.21439 1.00816 1.04170 0.91395 1.23088 0.97161 0.96881 1.00506 1.84744 0.92929 1.75254 1.02128 1.24054 0.94205 1.57118 0.98849 0.89136 1.25101 0.99513 0.93132 0.95030 1.69976 1.27666 1.43619 1.07779 0.86147 0.80824 0.78703 0.79874 1.19863 1.20473 1.19233 1.21129 0.92109 0.99676 1.02094 1.17506 0.89920 0.80984 1.04215 1.91485 1.80289 1.45979 1.93944 0.90752 0.91168 0.90870 0.84862 0.84843 0.90236 0.90430 0.76898 0.87225 0.87083 0.87009 0.84354 0.91519 0.84346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.71 9.84 36.01 0.35 -0.36 16 2 C -0.12 -0.98 5.89 -104.55 -0.62 -1.59 16 3 C -0.10 -0.71 9.70 -39.59 -0.38 -1.10 16 4 C -0.11 -0.89 9.70 -39.57 -0.38 -1.28 16 5 C -0.08 -0.76 5.25 -104.64 -0.55 -1.31 16 6 C 0.16 1.95 5.80 -5.20 -0.03 1.92 16 7 N -0.74 -10.11 5.50 -62.56 -0.34 -10.45 16 8 C 0.55 10.44 7.75 -12.52 -0.10 10.34 16 9 O -0.51 -11.59 13.77 5.27 0.07 -11.52 16 10 C -0.18 -3.45 5.89 -104.75 -0.62 -4.07 16 11 C -0.06 -0.95 9.53 -39.20 -0.37 -1.32 16 12 C -0.19 -2.85 10.02 -39.58 -0.40 -3.25 16 13 C -0.08 -1.29 10.03 -39.55 -0.40 -1.69 16 14 C -0.15 -3.18 9.22 -39.38 -0.36 -3.54 16 15 C -0.06 -1.28 6.14 -38.39 -0.24 -1.51 16 16 S 0.18 4.92 18.56 -107.50 -2.00 2.93 16 17 C -0.60 -16.34 9.00 30.94 0.28 -16.06 16 18 H 0.09 2.35 4.98 -52.49 -0.26 2.09 16 19 C 0.08 2.27 5.49 -17.46 -0.10 2.18 16 20 N -0.86 -24.63 13.22 55.49 0.73 -23.89 16 21 Si 0.92 20.60 29.55 -169.99 -5.02 15.58 16 22 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 23 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 24 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 25 C -0.13 -1.29 9.68 -39.52 -0.38 -1.67 16 26 C 0.09 0.92 7.24 -39.42 -0.29 0.63 16 27 F -0.14 -1.48 16.48 2.25 0.04 -1.44 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.45 7.64 -51.93 -0.40 0.06 16 30 H 0.07 0.34 8.09 -51.93 -0.42 -0.08 16 31 H 0.13 0.69 8.06 -52.49 -0.42 0.26 16 32 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 33 H 0.08 0.98 8.09 -51.93 -0.42 0.56 16 34 H 0.08 0.99 8.08 -51.93 -0.42 0.57 16 35 H 0.40 4.50 6.49 -40.82 -0.27 4.24 16 36 H 0.11 1.31 6.40 -52.48 -0.34 0.97 16 37 H 0.11 1.35 8.06 -52.48 -0.42 0.92 16 38 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 39 H 0.14 3.00 5.03 -52.49 -0.26 2.73 16 40 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 41 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 366.12 15.07 5.52 5.52 Total: -1.00 -31.89 366.12 -10.03 -41.92 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -4.45 Total: 5.04 kcal Atomic # 6 Polarization: -19.11 SS G_CDS: -4.57 Total: -23.68 kcal Atomic # 7 Polarization: -34.73 SS G_CDS: 0.39 Total: -34.34 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: 0.07 Total: -11.52 kcal Atomic # 9 Polarization: -1.48 SS G_CDS: 0.04 Total: -1.44 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Atomic # 16 Polarization: 4.92 SS G_CDS: -2.00 Total: 2.93 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.89 -10.03 -41.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032843611.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.580 kcal (2) G-P(sol) polarization free energy of solvation -31.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds